CsaV3_1G041670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G041670
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 26590310 .. 26592653 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGTTTTTGGATTCTTTTTCATCTAATAATTCTTCCCCCTAATTCCTTCTTCTTTTATTTCATTTTTAATTACCATTTATATCTTTTGTAATTTCCCTATGGATATATAAATGTGTGTGTGTGTGTATGTGTTTTTCTTTTTTCTTTTTTCTTTTAGGGGATGGTGATTGAATTTGTTTGGGTGTGATTTGGGATTATTATTAATTTTATGTATATTTTTCCATATTAATTTAATGTTATGTTATGTTATTATTAATTTCTTTTCCTAGTTTTCTTATATTTTGCAATTATATATCTATGTTTCATTTAGCAATTCAAGTGATTTACTCATTTAGTTGAATAACATAACAAAAATTGGTAAAAAATAGAAGTGATTTTGTTCGGTATAATAATTTGTCAATTCTATCTATTTTTTAAAAATAACCCTTGGAAACATATTTCATTAGTCATTTTTAATAATTAACCGACTAAATAAGAAAAAAAAAGGTATACTATCTACTTTAATTCAAACTCGAACAACGTACATAGTATCAACATTTACTAAACCGACCATAGTCCGTTTAGTGAAAGTTTGATGGAAAAATCGATTATGAGTGACCGACGAACAGCAACCAAAACAATCACGTTTTGAAAATAAAACGACAATATAGAAACGACTAGAAAAGGTGTAGAAAATAAAAGAAAAATATGATAGAAATTTAAAAGATGTGAAAAGAAAGTTGGAGACAAAATGAAGAGTGATCACATGGGGAGGTCAGTAGTCAGTGAGCTGTGGCTTTACAGATAGAGACTCCATTATTGTAATCTTTCCAAAGCCCAAAACTAATTTTAGGTGTTAAAATGTATAAATGTTTATATATATATGGGGATGAAATGATATTTTTTGAGACCAAACCAAATTAAAATGTGTATATAGTTTAGTTTAGGTTTGTTTTAAATTTAGTATTTATTATATTCCATTGTAAATAACTAGCTGTGCTTTCAGAAGAATTAGCTACAGAAGAGCATGATAGATCAAAAAAATCGATTCAACCAACTAAACCGAAGTCGGCCCGATAGAAAACAAGATGGGTTGGTTTTGAAAAGTTTCAAATTGAGAATTTTCAAAGTGTTAAACTATCCTAACAAAAACCGACCGACCAATGATCAACAGTGAGAATAGTTGAAATAATGTTTGGTAAACATCAACTTAAACTTCGGAAATTTATATTATAGTGTTTTGTAAACAATTTTTTTTTCAAAAAAGACTTATTTTAGATATAATAACAAAATAGTTTTTACTTTATTTATTTTTAATATTATTAACAAATATCAAACAACGAAACGAATGTTTTAGCCGATTATTCTTACAAACCTATATCGTAAGTCTTATCTTTGATCCTCATTCGAGTCTATATTGTGATCAAAATTTTTACCAAGCACAAAATGACATTGGAAGGGCTCAACTTCTTGGCTTAGATAACACCAAAACGTGCTATTAAAACCATCGATGGATTTAGTATAGGCTTAGGATGGGTTTAAATTCTTCCTGAACTTTATGCAATTTATATATATATATATAAACTCAAATAGTACCAATATCATAATCGACTAGTCTAGTGGTAAAACTATGACTCGGCTCGGTTAAAAAGAGAAATATCTAAGATGAAGAGAACTATTTTTTTGGCCCTATTTGTAGGCATTACCTTGAAAATAAATTGTAACATAGAAAGAAGAATATAATGGCCACATTTTCCTATAGATATTTGTTGAGAGATATAGGAAAAAAGCAGTATTAATTAATACATTTGGAGACCAATATGATGTTGCCATTTAGCATTTTGTTTCTCTCAAACAAAAATGTCAATTTCTCTTTCATTAATGAAATTTGGAAACTTAGAGAGAGAGAGAGAGAGGACAGCATAGAGAGAAAAGGCATCACATGTTGATGCTTACTTATGCACATGGGGCTGTGACATCTAATTATTTGGCCATATTTCATATTCCATATCATATGATCCAAACAAAACTACAGTTTTATTCAAATCAAATTTTATATTTTTCTTAATTTTTGTAATCATGTCTAAATACTATAATACCCTAAATATTTCAATGTTCTTATGATATTTCATATTCTAAACTGCTTTTTTTTTTATCTTAAAGGGGACGAAAGATCATCTTGATACAGTCTAG

mRNA sequence

ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGGGACGAAAGATCATCTTGATACAGTCTAG

Coding sequence (CDS)

ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGGGACGAAAGATCATCTTGATACAGTCTAG

Protein sequence

MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLGTKDHLDTV
Homology
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BLAST of CsaV3_1G041670 vs. TrEMBL
Match: tr|A0A0A0LWU9|A0A0A0LWU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-04
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MEAAAKRFQGLMVTXXXXXXXXXXXXXXXXXXXXXXXXXXXSDASLSIPTLMASFVPL 59
          MEAAAKRFQGLMVTXXXXXXXXXXXXXXXXXXXXXXXXXXXSDASLSIPTLMASFVPL
Sbjct: 1  MEAAAKRFQGLMVTXXXXXXXXXXXXXXXXXXXXXXXXXXXSDASLSIPTLMASFVPL 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G041670 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G041670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G041670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G041670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWU9|A0A0A0LWU9_CUCSA8.1e-04100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G041670.1CsaV3_1G041670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G041670CSPI01G29280Wild cucumber (PI 183967)cpicucB000
CsaV3_1G041670Cucsa.142310Cucumber (Gy14) v1cgycucB213
CsaV3_1G041670CmoCh11G007880Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G041670Cla011106Watermelon (97103) v1cucwmB025
CsaV3_1G041670MELO3C015580Melon (DHL92) v3.5.1cucmeB042
CsaV3_1G041670ClCG03G014520Watermelon (Charleston Gray)cucwcgB050
CsaV3_1G041670MELO3C015580.2Melon (DHL92) v3.6.1cucmedB039
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G041670Cucumber (Gy14) v2cgybcucB001
CsaV3_1G041670Cucurbita maxima (Rimu)cmacucB0066
CsaV3_1G041670Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G041670Cucurbita moschata (Rifu)cmocucB0053
CsaV3_1G041670Cucurbita pepo (Zucchini)cpecucB0428
CsaV3_1G041670Cucurbita pepo (Zucchini)cpecucB0813
CsaV3_1G041670Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G041670Watermelon (97103) v2cucwmbB041
CsaV3_1G041670Wax gourdcucwgoB102