Cucsa.142310 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.142310
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptionarabinogalactan protein 13
Locationscaffold01079 : 606571 .. 607102 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCAACAAATTCAAACAAACCAGAGGAACCCCATTTGAAAAAAATCCTCATATACATACCCAAACCCATTTTCAAGGATTTTTTtCATCAATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGTTTTTGGATTCTTTTTCATCTAATAATTCTTCCCCCTAATTCCTTCTTCTTTTATTTCATTTTTAATTACCATTTATATCTTTTGTAATTTCCCTATGGATATATAAaTGTGTGTGTGTGTGTATGTGTTTTtcTTTTTTCTTTTTtCTTTTAGGGGATGGTGATTGAATTTGTTTGGGTGTGATTTGGGATTATTATTAATTTTATGTATATTTTTCCATATTAATTTAATGTTATGTTATGTTATTATTAATTTCTTTTCCTA

mRNA sequence

CCTTCAACAAATTCAAACAAACCAGAGGAACCCCATTTGAAAAAAATCCTCATATACATACCCAAACCCATTTTCAAGGATTTTTTTCATCAATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGTTTTTGGATTCTTTTTCATCTAATAATTCTTCCCCCTAATTCCTTCTTCTTTTATTTCATTTTTAATTACCATTTATATCTTTTGTAATTTCCCTATGGATATATAAATGTGTGTGTGTGTGTATGTGTTTTTCTTTTTTCTTTTTTCTTTTAGGGGATGGTGATTGAATTTGTTTGGGTGTGATTTGGGattattattaattttatgtatatttttccatattaatttaatgttatgttatgttattattaatttCTTTTCCTA

Coding sequence (CDS)

ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGTTTTTGGATTCTTTTTCATCTAA

Protein sequence

MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFFI*
Homology
[Close]
BLAST of Cucsa.142310 vs. Swiss-Prot
Match: AGP14_ARATH (Arabinogalactan peptide 14 OS=Arabidopsis thaliana GN=AGP14 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 9  QGLMVTMMVVVLIAISSSSAI---VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          + + + + VVVL+A+ + S +   VAA +APAPSP SDAS  IPT  AS   + FGFFF
Sbjct: 2  EAMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFFF 60

[Close]
BLAST of Cucsa.142310 vs. Swiss-Prot
Match: AGP13_ARATH (Arabinogalactan peptide 13 OS=Arabidopsis thaliana GN=AGP13 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-07
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 9  QGLMVTMMVVVLIAISSSSAI--VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          + + + + V VL+A  + SA+   AA EAPAPSP SDASL+IP   AS   L FGF F
Sbjct: 2  EAMKMRLFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGFLF 59

[Close]
BLAST of Cucsa.142310 vs. Swiss-Prot
Match: AGP21_ARATH (Arabinogalactan peptide 21 OS=Arabidopsis thaliana GN=AGP21 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.7e-07
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 12 MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          M  M+ ++++A++ S+A  A  EAPAPSP SDA++ +P L AS V L  GF F
Sbjct: 6  MKMMVFIMVVAVAFSAATAATVEAPAPSPTSDAAMFVPALFASVVALASGFIF 58

[Close]
BLAST of Cucsa.142310 vs. Swiss-Prot
Match: AGP12_ARATH (Arabinogalactan peptide 12 OS=Arabidopsis thaliana GN=AGP12 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.0e-06
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 12 MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          ++ +++V ++A S+   + A  EAPAPSP SDA++ +P L AS   L  GF F
Sbjct: 8  LIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGFLF 60

[Close]
BLAST of Cucsa.142310 vs. TrEMBL
Match: A0A0A0LWU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60
          MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60

Query: 61 GFFFI 66
          GFFFI
Sbjct: 61 GFFFI 65

[Close]
BLAST of Cucsa.142310 vs. TrEMBL
Match: A0A068VFX6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012435001 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.1e-07
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 1 

Query: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60
          ME A K  + L+  M+V+++I++SS   + AA +APAP+PASDA++ +PTL AS   L F
Sbjct: 1  MEGAMK-MKMLVAAMLVIMMISVSSMKGVAAA-DAPAPAPASDATIFVPTLFASIAALAF 60

Query: 61 GFFF 65
          GF F
Sbjct: 61 GFLF 62

[Close]
BLAST of Cucsa.142310 vs. TrEMBL
Match: A0A067KU06_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02716 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-06
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 11 LMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          + V + +VV++   S+   VAAQEAPAPSPASDA++ +PT+ ASFV L FG  F
Sbjct: 6  MRVFLALVVVVMAFSAVQNVAAQEAPAPSPASDATIFVPTIFASFVALAFGLLF 59

[Close]
BLAST of Cucsa.142310 vs. TrEMBL
Match: V4MNW1_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027232mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-06
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 9  QGLMVTMMVVVLIAISSSSAI--VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          + L + + V VL+A+ + SA+   AA EAPAPSP SDASLSIP L A+ V L FGF F
Sbjct: 28 EALKMKLFVAVLVAMIAFSAVQQAAAVEAPAPSPTSDASLSIPALFATVVTLAFGFLF 85

[Close]
BLAST of Cucsa.142310 vs. TAIR10
Match: AT5G56540.1 (AT5G56540.1 arabinogalactan protein 14)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-08
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 9  QGLMVTMMVVVLIAISSSSAI---VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          + + + + VVVL+A+ + S +   VAA +APAPSP SDAS  IPT  AS   + FGFFF
Sbjct: 2  EAMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFFF 60

[Close]
BLAST of Cucsa.142310 vs. TAIR10
Match: AT4G26320.1 (AT4G26320.1 arabinogalactan protein 13)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-08
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 9  QGLMVTMMVVVLIAISSSSAI--VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          + + + + V VL+A  + SA+   AA EAPAPSP SDASL+IP   AS   L FGF F
Sbjct: 2  EAMKMRLFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGFLF 59

[Close]
BLAST of Cucsa.142310 vs. TAIR10
Match: AT1G55330.1 (AT1G55330.1 arabinogalactan protein 21)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-08
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 12 MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          M  M+ ++++A++ S+A  A  EAPAPSP SDA++ +P L AS V L  GF F
Sbjct: 6  MKMMVFIMVVAVAFSAATAATVEAPAPSPTSDAAMFVPALFASVVALASGFIF 58

[Close]
BLAST of Cucsa.142310 vs. TAIR10
Match: AT3G13520.1 (AT3G13520.1 arabinogalactan protein 12)

HSP 1 Score: 51.2 bits (121), Expect = 2.8e-07
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 12 MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          ++ +++V ++A S+   + A  EAPAPSP SDA++ +P L AS   L  GF F
Sbjct: 8  LIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGFLF 60

[Close]
BLAST of Cucsa.142310 vs. NCBI nr
Match: gi|778663322|ref|XP_011660059.1| (PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60
          MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60

Query: 61 GFFFI 66
          GFFFI
Sbjct: 61 GFFFI 65

[Close]
BLAST of Cucsa.142310 vs. NCBI nr
Match: gi|659100285|ref|XP_008451018.1| (PREDICTED: arabinogalactan peptide 21 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 9.7e-18
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1 

Query: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+F
Sbjct: 1  MEAANKF---LMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLF 60

Query: 61 GFFFI 66
          G FFI
Sbjct: 61 GLFFI 62

[Close]
BLAST of Cucsa.142310 vs. NCBI nr
Match: gi|661877609|emb|CDP18598.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 1 

Query: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60
          ME A K  + L+  M+V+++I++SS   + AA +APAP+PASDA++ +PTL AS   L F
Sbjct: 1  MEGAMK-MKMLVAAMLVIMMISVSSMKGVAAA-DAPAPAPASDATIFVPTLFASIAALAF 60

Query: 61 GFFF 65
          GF F
Sbjct: 61 GFLF 62

[Close]
BLAST of Cucsa.142310 vs. NCBI nr
Match: gi|567219152|ref|XP_006413205.1| (hypothetical protein EUTSA_v10027232mg, partial [Eutrema salsugineum])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 9  QGLMVTMMVVVLIAISSSSAI--VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          + L + + V VL+A+ + SA+   AA EAPAPSP SDASLSIP L A+ V L FGF F
Sbjct: 28 EALKMKLFVAVLVAMIAFSAVQQAAAVEAPAPSPTSDASLSIPALFATVVTLAFGFLF 85

[Close]
BLAST of Cucsa.142310 vs. NCBI nr
Match: gi|802585466|ref|XP_012070443.1| (PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 11 LMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF 65
          + V + +VV++   S+   VAAQEAPAPSPASDA++ +PT+ ASFV L FG  F
Sbjct: 6  MRVFLALVVVVMAFSAVQNVAAQEAPAPSPASDATIFVPTIFASFVALAFGLLF 59

The following BLAST results are available for this feature:
BLAST of Cucsa.142310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP14_ARATH2.6e-0749.15Arabinogalactan peptide 14 OS=Arabidopsis thaliana GN=AGP14 PE=1 SV=1[more]
AGP13_ARATH3.4e-0750.00Arabinogalactan peptide 13 OS=Arabidopsis thaliana GN=AGP13 PE=1 SV=1[more]
AGP21_ARATH7.7e-0747.17Arabinogalactan peptide 21 OS=Arabidopsis thaliana GN=AGP21 PE=3 SV=1[more]
AGP12_ARATH5.0e-0641.51Arabinogalactan peptide 12 OS=Arabidopsis thaliana GN=AGP12 PE=1 SV=1[more]
BLAST of Cucsa.142310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWU9_CUCSA2.0e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1[more]
A0A068VFX6_COFCA9.1e-0748.44Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012435001 PE=4 SV=1[more]
A0A067KU06_JATCU2.0e-0653.70Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02716 PE=4 SV=1[more]
V4MNW1_EUTSA2.0e-0655.17Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027232mg P... [more]
BLAST of Cucsa.142310 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G56540.11.5e-0849.15 arabinogalactan protein 14[more]
AT4G26320.11.9e-0850.00 arabinogalactan protein 13[more]
AT1G55330.14.3e-0847.17 arabinogalactan protein 21[more]
AT3G13520.12.8e-0741.51 arabinogalactan protein 12[more]
BLAST of Cucsa.142310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778663322|ref|XP_011660059.1|2.8e-25100.00PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus][more]
gi|659100285|ref|XP_008451018.1|9.7e-1883.08PREDICTED: arabinogalactan peptide 21 [Cucumis melo][more]
gi|661877609|emb|CDP18598.1|1.3e-0648.44unnamed protein product [Coffea canephora][more]
gi|567219152|ref|XP_006413205.1|2.9e-0655.17hypothetical protein EUTSA_v10027232mg, partial [Eutrema salsugineum][more]
gi|802585466|ref|XP_012070443.1|2.9e-0653.70PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.142310.1Cucsa.142310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34114FAMILY NOT NAMEDcoord: 11..65
score: 4.5
NoneNo IPR availablePANTHERPTHR34114:SF2ARABINOGALACTAN PEPTIDE 12-RELATEDcoord: 11..65
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.142310CsaV3_1G041670Cucumber (Chinese Long) v3cgycucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.142310Watermelon (Charleston Gray)cgywcgB242
Cucsa.142310Watermelon (97103) v1cgywmB251
Cucsa.142310Cucurbita pepo (Zucchini)cgycpeB0382
Cucsa.142310Cucurbita pepo (Zucchini)cgycpeB0385
Cucsa.142310Bottle gourd (USVL1VR-Ls)cgylsiB230
Cucsa.142310Melon (DHL92) v3.6.1cgymedB235
Cucsa.142310Watermelon (97103) v2cgywmbB241
Cucsa.142310Wax gourdcgywgoB282
Cucsa.142310Cucurbita maxima (Rimu)cgycmaB0396
Cucsa.142310Cucurbita moschata (Rifu)cgycmoB0395
Cucsa.142310Cucurbita moschata (Rifu)cgycmoB0396
Cucsa.142310Wild cucumber (PI 183967)cgycpiB208
Cucsa.142310Cucumber (Chinese Long) v2cgycuB205
Cucsa.142310Melon (DHL92) v3.5.1cgymeB238