MELO3C015580 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015580
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Arabinogalactan peptide 14
Location	chr2 : 3041978 .. 3042589 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACCACCAAATCAAACCAACCTGTAAAAAACCTTAAATAATAAAAGAAATTCCCATTTCTTTTGCTATAAATACCAACACACTCTTCATCATTTCCCTTACCATTTTCAAAAAAAAGAAAAGAAAAGAAAAACAAAGAGAAACCCATTTGAAAAAATTGTTAAAAAAAAAGTCCTCAACTTTCAAGGATTTTTTCATCAAAATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAATAATTTTCTTCCCCTTTCCTCTTTTTTCTTTTCTTTCAATTTACCTATGATTATATATATATATATATATAAATGTGTGTGTGTGTGTGTGTTTTTTCTTTATTTAGGGGATGATGATTGAATTTGTTTGGGTGTGAGATTTGGGATTATTATTGATTTTATGTATATCTTTCCATATTAATTTAATGTTATGTTGTTATTCTATATTATTGTTCTCATT

mRNA sequence

CAAACCACCAAATCAAACCAACCTGTAAAAAACCTTAAATAATAAAAGAAATTCCCATTTCTTTTGCTATAAATACCAACACACTCTTCATCATTTCCCTTACCATTTTCAAAAAAAAGAAAAGAAAAGAAAAACAAAGAGAAACCCATTTGAAAAAATTGTTAAAAAAAAAGTCCTCAACTTTCAAGGATTTTTTCATCAAAATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAATAATTTTCTTCCCCTTTCCTCTTTTTTCTTTTCTTTCAATTTACCTATGATTATATATATATATATATATAAATGTGTGTGTGTGTGTGTGTTTTTTCTTTATTTAGGGGATGATGATTGAATTTGTTTGGGTGTGAGATTTGGGATTATTATTGATTTTATGTATATCTTTCCATATTAATTTAATGTTATGTTGTTATTCTATATTATTGTTCTCATT

Coding sequence (CDS)

ATGGAAGCAGCAAACAAGTTTCTAATGATAACAATGATGGTGGTTGTTGTAATGGTCATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACGTTAATGGCTTCTTTTGTTCCTCTTCTTTTTGGATTGTTTTTCATCTAA

Protein sequence

MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFFI*

Homology

[Close]

BLAST of MELO3C015580 vs. Swiss-Prot
Match: AGP14_ARATH (Arabinogalactan peptide 14 OS=Arabidopsis thaliana GN=AGP14 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-06
Identity = 27/58 (46.55%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 4  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF 62
          A K  +  +++V V+  S+    VAA +APAPSP SDAS  IPT  AS   + FG FF
Sbjct: 3  AMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFFF 60

[Close]

BLAST of MELO3C015580 vs. Swiss-Prot
Match: AGP21_ARATH (Arabinogalactan peptide 21 OS=Arabidopsis thaliana GN=AGP21 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.2e-06
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1


Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEA    +M+ +MVV V   + S+A  A  EAPAPSP SDA++ +P L AS V L  G  
Sbjct: 1  MEAMKMKMMVFIMVVAV---AFSAATAATVEAPAPSPTSDAAMFVPALFASVVALASGFI 58

Query: 61 F 62
          F
Sbjct: 61 F 58

[Close]

BLAST of MELO3C015580 vs. TrEMBL
Match: A0A0A0LWU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-18
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1


Query: 1  MEAANKF---LMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLF 60
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+F
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60

Query: 61 GLFFI 63
          G FFI
Sbjct: 61 GFFFI 65

[Close]

BLAST of MELO3C015580 vs. TrEMBL
Match: K4D2A0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-07
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEA    +++ +++VVVMV+S    +VAA +APAP+PASDA+L +PT+ AS V L FG+F
Sbjct: 1  MEAMKMNVLLMVVMVVVMVLSEIQNVVAA-DAPAPAPASDATLFVPTIFASLVALAFGIF 60

Query: 61 F 62
          F
Sbjct: 61 F 60

[Close]

BLAST of MELO3C015580 vs. TrEMBL
Match: A0A067KU06_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02716 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-07
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 4  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF 62
          A K  +   +VVVVM  S+    VAAQEAPAPSPASDA++ +PT+ ASFV L FGL F
Sbjct: 3  ALKMRVFLALVVVVMAFSAVQN-VAAQEAPAPSPASDATIFVPTIFASFVALAFGLLF 59

[Close]

BLAST of MELO3C015580 vs. TrEMBL
Match: G7KPM1_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_6g029330 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 4  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDAS-LSIPTLMASFVPLLFGLFF 62
          A K   I  MVVVVM++++SS  V+A +APAPSP SDA+ L +PT++ASFV LLFGL F
Sbjct: 3  ALKMNQIFAMVVVVMMMAASS--VSAADAPAPSPTSDATTLFVPTIIASFVALLFGLLF 59

[Close]

BLAST of MELO3C015580 vs. TrEMBL
Match: A0A068VFX6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012435001 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1


Query: 1  MEAANKFLMITMMVVVVMVISSSSAI-VAAQEAPAPSPASDASLSIPTLMASFVPLLFGL 60
          ME A K  M+   ++V+M+IS SS   VAA +APAP+PASDA++ +PTL AS   L FG 
Sbjct: 1  MEGAMKMKMLVAAMLVIMMISVSSMKGVAAADAPAPAPASDATIFVPTLFASIAALAFGF 60

Query: 61 FF 62
           F
Sbjct: 61 LF 62

[Close]

BLAST of MELO3C015580 vs. TAIR10
Match: AT5G56540.1 (AT5G56540.1 arabinogalactan protein 14)

HSP 1 Score: 52.0 bits (123), Expect = 1.6e-07
Identity = 27/58 (46.55%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 4  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF 62
          A K  +  +++V V+  S+    VAA +APAPSP SDAS  IPT  AS   + FG FF
Sbjct: 3  AMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFFF 60

[Close]

BLAST of MELO3C015580 vs. TAIR10
Match: AT1G55330.1 (AT1G55330.1 arabinogalactan protein 21)

HSP 1 Score: 50.8 bits (120), Expect = 3.5e-07
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1


Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEA    +M+ +MVV V   + S+A  A  EAPAPSP SDA++ +P L AS V L  G  
Sbjct: 1  MEAMKMKMMVFIMVVAV---AFSAATAATVEAPAPSPTSDAAMFVPALFASVVALASGFI 58

Query: 61 F 62
          F
Sbjct: 61 F 58

[Close]

BLAST of MELO3C015580 vs. TAIR10
Match: AT4G26320.1 (AT4G26320.1 arabinogalactan protein 13)

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-06
Identity = 28/61 (45.90%), Postives = 32/61 (52.46%), Query Frame = 1


Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEA    L + ++V  +   +   A  AA EAPAPSP SDASL+IP   AS   L FG  
Sbjct: 1  MEAMKMRLFVAVLVAAMAFSAVQQA--AAVEAPAPSPTSDASLAIPAFFASVATLAFGFL 59

Query: 61 F 62
          F
Sbjct: 61 F 59

[Close]

BLAST of MELO3C015580 vs. TAIR10
Match: AT3G13520.1 (AT3G13520.1 arabinogalactan protein 12)

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-06
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 1


Query: 6  KFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF 62
          K  +I +++V ++  S+   + A  EAPAPSP SDA++ +P L AS   L  G  F
Sbjct: 5  KMKLIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGFLF 60

[Close]

BLAST of MELO3C015580 vs. NCBI nr
Match: gi|659100285|ref|XP_008451018.1| (PREDICTED: arabinogalactan peptide 21 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF
Sbjct: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60

Query: 61 FI 63
          FI
Sbjct: 61 FI 62

[Close]

BLAST of MELO3C015580 vs. NCBI nr
Match: gi|778663322|ref|XP_011660059.1| (PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-18
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1


Query: 1  MEAANKF---LMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLF 60
          MEAA K    LM+TMMVVV++ ISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL+F
Sbjct: 1  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVF 60

Query: 61 GLFFI 63
          G FFI
Sbjct: 61 GFFFI 65

[Close]

BLAST of MELO3C015580 vs. NCBI nr
Match: gi|970056954|ref|XP_015055121.1| (PREDICTED: arabinogalactan peptide 14-like [Solanum pennellii])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEA    +++ +++VVVMV+S    +VAA +APAP+PASDA+L +PT+ AS V L FG+F
Sbjct: 1  MEAMKMNVLLVVVMVVVMVLSEIQNVVAA-DAPAPAPASDATLFVPTIFASLVALAFGIF 60

Query: 61 F 62
          F
Sbjct: 61 F 60

[Close]

BLAST of MELO3C015580 vs. NCBI nr
Match: gi|460407420|ref|XP_004249150.1| (PREDICTED: arabinogalactan peptide 14-like [Solanum lycopersicum])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 1  MEAANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLF 60
          MEA    +++ +++VVVMV+S    +VAA +APAP+PASDA+L +PT+ AS V L FG+F
Sbjct: 1  MEAMKMNVLLMVVMVVVMVLSEIQNVVAA-DAPAPAPASDATLFVPTIFASLVALAFGIF 60

Query: 61 F 62
          F
Sbjct: 61 F 60

[Close]

BLAST of MELO3C015580 vs. NCBI nr
Match: gi|802585466|ref|XP_012070443.1| (PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas])

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-07
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1


Query: 4  ANKFLMITMMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLLFGLFF 62
          A K  +   +VVVVM  S+    VAAQEAPAPSPASDA++ +PT+ ASFV L FGL F
Sbjct: 3  ALKMRVFLALVVVVMAFSAVQN-VAAQEAPAPSPASDATIFVPTIFASFVALAFGLLF 59

The following BLAST results are available for this feature:

BLAST of MELO3C015580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP14_ARATH	2.8e-06	46.55	Arabinogalactan peptide 14 OS=Arabidopsis thaliana GN=AGP14 PE=1 SV=1	[more]
AGP21_ARATH	6.2e-06	47.54	Arabinogalactan peptide 21 OS=Arabidopsis thaliana GN=AGP21 PE=3 SV=1	[more]

BLAST of MELO3C015580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWU9_CUCSA	6.4e-18	83.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1	[more]
K4D2A0_SOLLC	1.3e-07	52.46	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A067KU06_JATCU	3.9e-07	58.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02716 PE=4 SV=1	[more]
G7KPM1_MEDTR	1.9e-06	59.32	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_6g029330 PE=4 SV=1	[more]
A0A068VFX6_COFCA	1.9e-06	51.61	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012435001 PE=4 SV=1	[more]

BLAST of MELO3C015580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56540.1	1.6e-07	46.55	arabinogalactan protein 14	[more]
AT1G55330.1	3.5e-07	47.54	arabinogalactan protein 21	[more]
AT4G26320.1	1.3e-06	45.90	arabinogalactan protein 13	[more]
AT3G13520.1	2.3e-06	39.29	arabinogalactan protein 12	[more]

BLAST of MELO3C015580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100285\|ref\|XP_008451018.1\|	1.5e-23	100.00	PREDICTED: arabinogalactan peptide 21 [Cucumis melo]	[more]
gi\|778663322\|ref\|XP_011660059.1\|	9.2e-18	83.08	PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus]	[more]
gi\|970056954\|ref\|XP_015055121.1\|	1.5e-07	52.46	PREDICTED: arabinogalactan peptide 14-like [Solanum pennellii]	[more]
gi\|460407420\|ref\|XP_004249150.1\|	1.9e-07	52.46	PREDICTED: arabinogalactan peptide 14-like [Solanum lycopersicum]	[more]
gi\|802585466\|ref\|XP_012070443.1\|	5.6e-07	58.62	PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU46024	melon EST collection version 4.0	transcribed_cluster
MU46031	melon EST collection version 4.0	transcribed_cluster
MU57725	melon EST collection version 4.0	transcribed_cluster
MU59443	melon EST collection version 4.0	transcribed_cluster
MU60908	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015580T1	MELO3C015580T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU46031	MU46031	transcribed_cluster
MU46024	MU46024	transcribed_cluster
MU57725	MU57725	transcribed_cluster
MU59443	MU59443	transcribed_cluster
MU60908	MU60908	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34114	FAMILY NOT NAMED	coord: 1..62 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015580	CsaV3_1G041670	Cucumber (Chinese Long) v3	cucmeB042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015580	Watermelon (Charleston Gray)	mewcgB245
MELO3C015580	Watermelon (97103) v1	mewmB271
MELO3C015580	Cucurbita pepo (Zucchini)	cpemeB329
MELO3C015580	Cucurbita pepo (Zucchini)	cpemeB620
MELO3C015580	Bottle gourd (USVL1VR-Ls)	lsimeB396
MELO3C015580	Cucumber (Gy14) v2	cgybmeB038
MELO3C015580	Watermelon (97103) v2	mewmbB249
MELO3C015580	Wax gourd	mewgoB304
MELO3C015580	Cucurbita moschata (Rifu)	cmomeB097
MELO3C015580	Cucumber (Gy14) v1	cgymeB238
MELO3C015580	Cucurbita maxima (Rimu)	cmameB104
MELO3C015580	Wild cucumber (PI 183967)	cpimeB042
MELO3C015580	Cucumber (Chinese Long) v2	cumeB041