CmoCh11G007880 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G007880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr11 : 3899191 .. 3899370 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA

mRNA sequence

ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA

Coding sequence (CDS)

ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA
Homology
[Close]
BLAST of CmoCh11G007880 vs. TrEMBL
Match: A0A0A0LWU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-07
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 2  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF 59
          AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Sbjct: 4  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF 63

[Close]
BLAST of CmoCh11G007880 vs. NCBI nr
Match: gi|778663322|ref|XP_011660059.1| (PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 2  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF 59
          AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Sbjct: 4  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF 63

The following BLAST results are available for this feature:
BLAST of CmoCh11G007880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G007880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWU9_CUCSA3.7e-0766.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1[more]
BLAST of CmoCh11G007880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh11G007880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778663322|ref|XP_011660059.1|5.3e-0766.67PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G007880.1CmoCh11G007880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G007880CsaV3_1G041670Cucumber (Chinese Long) v3cmocucB0090
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G007880Wax gourdcmowgoB0159
CmoCh11G007880Melon (DHL92) v3.5.1cmomeB097
CmoCh11G007880Cucumber (Gy14) v1cgycmoB0396
CmoCh11G007880Cucurbita maxima (Rimu)cmacmoB112
CmoCh11G007880Wild cucumber (PI 183967)cmocpiB078
CmoCh11G007880Cucumber (Chinese Long) v2cmocuB075
CmoCh11G007880Watermelon (Charleston Gray)cmowcgB101
CmoCh11G007880Watermelon (97103) v1cmowmB088
CmoCh11G007880Cucurbita pepo (Zucchini)cmocpeB104
CmoCh11G007880Cucurbita pepo (Zucchini)cmocpeB129
CmoCh11G007880Bottle gourd (USVL1VR-Ls)cmolsiB118
CmoCh11G007880Cucumber (Gy14) v2cgybcmoB027
CmoCh11G007880Melon (DHL92) v3.6.1cmomedB104
CmoCh11G007880Watermelon (97103) v2cmowmbB100