ClCG03G014520 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G014520
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	arabinogalactan protein 21 LENGTH=58
Location	CG_Chr03 : 29406322 .. 29409517 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAATGAAGTTTCAAGCTTTGATGGTGATAATGGTGGTTGTTTTAATGGCTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTGCTTCTGATGCTCCAATTTCTCTTCCAGCTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTGGATTCTTCCTCTAAATTCTTCCACCTTTTTTTTTTTTTTTTTTTTTTAATTTCACTCACCATTTATATAGTAATTTCTAATGGATATATTAATATGTGTGCGTTCTTTAAACCCATGTCTAGAAATGATGAAATGTCTATGAAGGAAGGAAATGGAGAGATGGGTTGGTGGTTTTTTTTTTTTTTTTTTAATTTCACTCACCATTTATATAGTAATTTCTAATGGATATATTAATATGTGTGCGTTCTTTAAACCCATGTCTAGAAATGATGAAATGTCTATGAAGGAAGGAAATGGAGAGATGGGTTGGTGGTTTTTTTTTTTTTTTTTAGGGTTATTAATTGTGAGGTGATGGTTGAATTTGTTTGGGTGTGATTTGGGATTATTAATTTTATGTATATTTTCCATATTTAATGTTATGTTATTATTATTTTTTATATCCTCTTCTTTCTGGTAATGTTCTTATCCTTTTGCTATTTTACATGTGTCTTTCACTTAGCAATTAAAGTCATTTACTTCTTAAGTAGAAAATAATTGAATTTTTAACTCAAGAAACAAAATCATTATTCATTTTTTAAACAATCAAATTGTTTTTCTTAGAATTTAATGTTTAAATACTACTTCGGTCTCCGTATTTTTTACTTTGATTCATTTTAATCTTTATATATTTTTAACTTTTGTTCATTTTTGTCCTTTAACTTTAGAAAAGTGACTATTTTGATCTCTTAAAAATGAAGTAAAAATGAGAATGAAGAGACCAAAATGGTCAATTTTGAAAGTACAAGAACCAAAATGAATATTTTGAAAGTATATGAACCAAAATTGAAAATATAGGGTCGAAAATGAACATTTTTTAAAGTATAAGGATTAAAATAAACGAAAACAAAAAGTACAGATATCAAAGTAATATTTAAACTTAAATTTAATACATAATTTTTTTTTTTATGTATATAACATATTAAATGTTGGCTAGTCATTGCATAATAAAAGTTTGCTTCTTATATTAATGTTACTATGCAAATAGGTATTCCATTTTGAAATTATAAGGACTAATATTAGTAAAATTTGAAAGTGTATGGAAACACCAAAATATATGGCCTAAAAAAATAGGTTTGAGAAATGAAAATATTATTTAAACTTACATTTTAGTTTTTAAAATTTTTAAGAGATGAAAATATGAATATATAGAAATTTCAAAATATGAAAAACATGTTTGAGACAAAATCAAGACTTAGCACATGGGAGGTCAGTGATTGAGATTGAGCTGTGGCTTTACAAGGCAGAGACTCCATTATTTGTAAAACTTTCAAACCCAAACTTTAGGTTAATTAAATGGAAAATGTATATGGTGAATGGTGATGATATTGAGACCAAGCAAATTTGAATGTCAAATAATCTACATTACTACCCAAGCAAACTTAGCTCAACGGTAACTAATATAACATTTTATCATAGAAGTTGAAGATTTGATCTTCCATCTTACAATTGTTGTATTAAAAAAAATATTTTACGTTAATTTTAAAAATTCAGGACAAATTACAAAATCACCCCTAAAGTATAGTAGTAGTTGCTATCAAGCTTACAATAATCGTAAAAATTGAACCCTCAAACTTATACAATTATTATAATTTACACAATTATGTAAGTTTGAGGGTCCAATTTTAACCATCGGATAAGGTTGACGGCTCAATTTTTAAATTTGAAAGTTTAAGGGTACAATGGCAACTATCATCATACTATAAGGATGGGTTTTTGTGATTTGTCCTTAAATTTATATCTATTTAGTCCCTTGATTTAAATTTTTTTTCTTTTCTGAGAGTTCTTTCTTAAACGTTTCATCTTTTTTGTCCAATAAATTTCTAATATTTAACTTTTGTATCTAATAGGTTATTGACGTATTTGACAATTTTCAAAATTGATGGACTCACCGGATACTAAATTAAAAGTTTAGGTTTCTAATAGATATAAAATTCAATTTTATATTGAATAGATCGGTTATTTTTTAAAGACTTTCAATATGTTAAAATAAAAAAAATAGAAAATGTGGAGACCTATCATACACTTTGAAAGTTCATCAACTAAATTTCTAACTTATCCAATAAATTAGACCCTTTTCAATAACCATTTGGCTTTTGAAAATTAAGCCTTAATTATTACTTCCACTTATAAGTTTTTATTTTTATTTTTATTTTGTTATCCACCTTTCATCGATAGAACACGAATAGATGTCTATCTAGGTCTATCGCGGTCTATCACAGATAGAAAATAAAATTTTGTTGTAAATAGTTTGATATTTTTTCTATTTATAATAATTTTCCTAATATTAGAAATTACACTCTCTATTAGTAATTTATAATTATTTTCACTCAATTTCATTTAAAATAAGCTCAAAACCACTTAAATAAAATGATTGTTTTCAAATATAGCAAAATGAGTTAAACTATTTACAAATATAGAAAATTTTCACTGTTTATCAACGATATCACTGATAAACAATAAAATTTTTCGATATTTGTAAATAGTTCGATATATTTTCTATTTATAAATAATTTTTCTAAATAAAATCATTATTCTTCTCCATTTCTACCAAAGTAGCAAGAAAGATATTATGGAATTCTTCTTAAAAATAAAAGATGATCGAAAAAAATGAAGAACTATTCATATTATAAATAAAAAGTTGCTTTTATTTATTTAAACCAACATTTTTCTCTGATATTATATTACTACAAACATTTTAAAGAAGTCTATGTATGTGTAAACATTATGAATTAACGATTTTAAATCGAAATTTCAATGAAAAATACAAATAGATTTTTAATTAATAAGTTATTACTTTCTCAGCCAAAATTAGGAGTACAAATTGATTTTTTCCCTACTAATATTTATTAATAAATATCAACCAATGAAACACATATTAAATAAGAAAAAAAAAAAAAAAAAAAAAAATTGTAAGATCCTAAGTAGAGTTCATGTTGATAGGACACTTCAAAATTCCACCTTGGAATGAAGAATGGCCACATTTTCCTTTAG

mRNA sequence

ATGGAAGCAATGAAGTTTCAAGCTTTGATGGTGATAATGGTGGTTGTTTTAATGGCTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTGCTTCTGATGCTCCAATTTCTCTTCCAGCTTTAATGGCTTCTCTTGCTCCTCTTGACACTTCAAAATTCCACCTTGGAATGAAGAATGGCCACATTTTCCTTTAG

Coding sequence (CDS)

ATGGAAGCAATGAAGTTTCAAGCTTTGATGGTGATAATGGTGGTTGTTTTAATGGCTTTCTCATCCTCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTGCTTCTGATGCTCCAATTTCTCTTCCAGCTTTAATGGCTTCTCTTGCTCCTCTTGACACTTCAAAATTCCACCTTGGAATGAAGAATGGCCACATTTTCCTTTAG

Protein sequence

MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPLDTSKFHLGMKNGHIFL

Homology

[Close]

BLAST of ClCG03G014520 vs. Swiss-Prot
Match: AGP21_ARATH (Arabinogalactan peptide 21 OS=Arabidopsis thaliana GN=AGP21 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.1e-07
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 1  MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMK + +MV ++VV +AFS++  A  EAPAPSP SDA + +PAL AS+  L
Sbjct: 1  MEAMKMK-MMVFIMVVAVAFSAATAATVEAPAPSPTSDAAMFVPALFASVVAL 52

[Close]

BLAST of ClCG03G014520 vs. Swiss-Prot
Match: AGP12_ARATH (Arabinogalactan peptide 12 OS=Arabidopsis thaliana GN=AGP12 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.0e-06
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 1  MEAMKFQALMVIMVVVLMAFSS--SIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          ME+MK + L+V+++V ++AFS+  ++ A  EAPAPSP SDA + +PAL AS+A L
Sbjct: 1  MESMKMK-LIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAAL 54

[Close]

BLAST of ClCG03G014520 vs. Swiss-Prot
Match: AGP13_ARATH (Arabinogalactan peptide 13 OS=Arabidopsis thaliana GN=AGP13 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.9e-06
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 1  MEAMKFQALMVIMVVVLMAFSS-SIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMK + L V ++V  MAFS+    AA EAPAPSP SDA +++PA  AS+A L
Sbjct: 1  MEAMKMR-LFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATL 53

[Close]

BLAST of ClCG03G014520 vs. TrEMBL
Match: A0A0A0LWU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-08
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 3  AMKFQALMV-IMVVVLMAF--SSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          A +FQ LMV +MVVVL+A   SS+IVAAQEAPAPSPASDA +S+P LMAS  PL
Sbjct: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 58

[Close]

BLAST of ClCG03G014520 vs. TAIR10
Match: AT1G55330.1 (AT1G55330.1 arabinogalactan protein 21)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-08
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 1  MEAMKFQALMVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMK + +MV ++VV +AFS++  A  EAPAPSP SDA + +PAL AS+  L
Sbjct: 1  MEAMKMK-MMVFIMVVAVAFSAATAATVEAPAPSPTSDAAMFVPALFASVVAL 52

[Close]

BLAST of ClCG03G014520 vs. TAIR10
Match: AT3G13520.1 (AT3G13520.1 arabinogalactan protein 12)

HSP 1 Score: 51.6 bits (122), Expect = 2.2e-07
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 1  MEAMKFQALMVIMVVVLMAFSS--SIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          ME+MK + L+V+++V ++AFS+  ++ A  EAPAPSP SDA + +PAL AS+A L
Sbjct: 1  MESMKMK-LIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAAL 54

[Close]

BLAST of ClCG03G014520 vs. TAIR10
Match: AT4G26320.1 (AT4G26320.1 arabinogalactan protein 13)

HSP 1 Score: 50.4 bits (119), Expect = 5.0e-07
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 1  MEAMKFQALMVIMVVVLMAFSS-SIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          MEAMK + L V ++V  MAFS+    AA EAPAPSP SDA +++PA  AS+A L
Sbjct: 1  MEAMKMR-LFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATL 53

[Close]

BLAST of ClCG03G014520 vs. TAIR10
Match: AT5G56540.1 (AT5G56540.1 arabinogalactan protein 14)

HSP 1 Score: 46.2 bits (108), Expect = 9.4e-06
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 1  MEAMKFQALMVIMVVVLMAFSS--SIVAAQEAPAPSPASDAPISLPALMASLA 52
          MEAMK +  +V++V V+ AFS+    VAA +APAPSP SDA   +P   AS+A
Sbjct: 1  MEAMKMKLYVVVLVAVI-AFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVA 52

[Close]

BLAST of ClCG03G014520 vs. NCBI nr
Match: gi|778663322|ref|XP_011660059.1| (PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-08
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 3  AMKFQALMV-IMVVVLMAF--SSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          A +FQ LMV +MVVVL+A   SS+IVAAQEAPAPSPASDA +S+P LMAS  PL
Sbjct: 5  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 58

[Close]

BLAST of ClCG03G014520 vs. NCBI nr
Match: gi|659100285|ref|XP_008451018.1| (PREDICTED: arabinogalactan peptide 21 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-07
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 1


Query: 10 MVIMVVVLMAFSSSIVAAQEAPAPSPASDAPISLPALMASLAPL 54
          M+++VV++++ SS+IVAAQEAPAPSPASDA +S+P LMAS  PL
Sbjct: 12 MMVVVVMVISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL 55

The following BLAST results are available for this feature:

BLAST of ClCG03G014520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP21_ARATH	6.1e-07	54.72	Arabinogalactan peptide 21 OS=Arabidopsis thaliana GN=AGP21 PE=3 SV=1	[more]
AGP12_ARATH	4.0e-06	50.91	Arabinogalactan peptide 12 OS=Arabidopsis thaliana GN=AGP12 PE=1 SV=1	[more]
AGP13_ARATH	8.9e-06	55.56	Arabinogalactan peptide 13 OS=Arabidopsis thaliana GN=AGP13 PE=1 SV=1	[more]

BLAST of ClCG03G014520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWU9_CUCSA	2.3e-08	70.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G599540 PE=4 SV=1	[more]

BLAST of ClCG03G014520 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55330.1	3.5e-08	54.72	arabinogalactan protein 21	[more]
AT3G13520.1	2.2e-07	50.91	arabinogalactan protein 12	[more]
AT4G26320.1	5.0e-07	55.56	arabinogalactan protein 13	[more]
AT5G56540.1	9.4e-06	50.94	arabinogalactan protein 14	[more]

BLAST of ClCG03G014520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663322\|ref\|XP_011660059.1\|	3.3e-08	70.37	PREDICTED: arabinogalactan peptide 13-like [Cucumis sativus]	[more]
gi\|659100285\|ref\|XP_008451018.1\|	6.1e-07	65.91	PREDICTED: arabinogalactan peptide 21 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G014520.1	ClCG03G014520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G014520	CsaV3_1G041670	Cucumber (Chinese Long) v3	cucwcgB050

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G014520	Watermelon (97103) v2	wcgwmbB186
ClCG03G014520	Wax gourd	wcgwgoB362
ClCG03G014520	Cucumber (Gy14) v1	cgywcgB242
ClCG03G014520	Cucurbita maxima (Rimu)	cmawcgB113
ClCG03G014520	Cucurbita moschata (Rifu)	cmowcgB045
ClCG03G014520	Cucurbita moschata (Rifu)	cmowcgB101
ClCG03G014520	Wild cucumber (PI 183967)	cpiwcgB049
ClCG03G014520	Cucumber (Chinese Long) v2	cuwcgB046
ClCG03G014520	Melon (DHL92) v3.5.1	mewcgB245
ClCG03G014520	Watermelon (97103) v1	wcgwmB224
ClCG03G014520	Cucurbita pepo (Zucchini)	cpewcgB327
ClCG03G014520	Cucurbita pepo (Zucchini)	cpewcgB599
ClCG03G014520	Bottle gourd (USVL1VR-Ls)	lsiwcgB364
ClCG03G014520	Cucumber (Gy14) v2	cgybwcgB043
ClCG03G014520	Melon (DHL92) v3.6.1	medwcgB237