CsaV3_1G041670.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G041670.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 26590310 .. 26592653 (+)
Sequence length204
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGTTTTTGGATTCTTTTTCATCTAATAATTCTTCCCCCTAATTCCTTCTTCTTTTATTTCATTTTTAATTACCATTTATATCTTTTGTAATTTCCCTATGGATATATAAATGTGTGTGTGTGTGTATGTGTTTTTCTTTTTTCTTTTTTCTTTTAGGGGATGGTGATTGAATTTGTTTGGGTGTGATTTGGGATTATTATTAATTTTATGTATATTTTTCCATATTAATTTAATGTTATGTTATGTTATTATTAATTTCTTTTCCTAGTTTTCTTATATTTTGCAATTATATATCTATGTTTCATTTAGCAATTCAAGTGATTTACTCATTTAGTTGAATAACATAACAAAAATTGGTAAAAAATAGAAGTGATTTTGTTCGGTATAATAATTTGTCAATTCTATCTATTTTTTAAAAATAACCCTTGGAAACATATTTCATTAGTCATTTTTAATAATTAACCGACTAAATAAGAAAAAAAAAGGTATACTATCTACTTTAATTCAAACTCGAACAACGTACATAGTATCAACATTTACTAAACCGACCATAGTCCGTTTAGTGAAAGTTTGATGGAAAAATCGATTATGAGTGACCGACGAACAGCAACCAAAACAATCACGTTTTGAAAATAAAACGACAATATAGAAACGACTAGAAAAGGTGTAGAAAATAAAAGAAAAATATGATAGAAATTTAAAAGATGTGAAAAGAAAGTTGGAGACAAAATGAAGAGTGATCACATGGGGAGGTCAGTAGTCAGTGAGCTGTGGCTTTACAGATAGAGACTCCATTATTGTAATCTTTCCAAAGCCCAAAACTAATTTTAGGTGTTAAAATGTATAAATGTTTATATATATATGGGGATGAAATGATATTTTTTGAGACCAAACCAAATTAAAATGTGTATATAGTTTAGTTTAGGTTTGTTTTAAATTTAGTATTTATTATATTCCATTGTAAATAACTAGCTGTGCTTTCAGAAGAATTAGCTACAGAAGAGCATGATAGATCAAAAAAATCGATTCAACCAACTAAACCGAAGTCGGCCCGATAGAAAACAAGATGGGTTGGTTTTGAAAAGTTTCAAATTGAGAATTTTCAAAGTGTTAAACTATCCTAACAAAAACCGACCGACCAATGATCAACAGTGAGAATAGTTGAAATAATGTTTGGTAAACATCAACTTAAACTTCGGAAATTTATATTATAGTGTTTTGTAAACAATTTTTTTTTCAAAAAAGACTTATTTTAGATATAATAACAAAATAGTTTTTACTTTATTTATTTTTAATATTATTAACAAATATCAAACAACGAAACGAATGTTTTAGCCGATTATTCTTACAAACCTATATCGTAAGTCTTATCTTTGATCCTCATTCGAGTCTATATTGTGATCAAAATTTTTACCAAGCACAAAATGACATTGGAAGGGCTCAACTTCTTGGCTTAGATAACACCAAAACGTGCTATTAAAACCATCGATGGATTTAGTATAGGCTTAGGATGGGTTTAAATTCTTCCTGAACTTTATGCAATTTATATATATATATATAAACTCAAATAGTACCAATATCATAATCGACTAGTCTAGTGGTAAAACTATGACTCGGCTCGGTTAAAAAGAGAAATATCTAAGATGAAGAGAACTATTTTTTTGGCCCTATTTGTAGGCATTACCTTGAAAATAAATTGTAACATAGAAAGAAGAATATAATGGCCACATTTTCCTATAGATATTTGTTGAGAGATATAGGAAAAAAGCAGTATTAATTAATACATTTGGAGACCAATATGATGTTGCCATTTAGCATTTTGTTTCTCTCAAACAAAAATGTCAATTTCTCTTTCATTAATGAAATTTGGAAACTTAGAGAGAGAGAGAGAGAGGACAGCATAGAGAGAAAAGGCATCACATGTTGATGCTTACTTATGCACATGGGGCTGTGACATCTAATTATTTGGCCATATTTCATATTCCATATCATATGATCCAAACAAAACTACAGTTTTATTCAAATCAAATTTTATATTTTTCTTAATTTTTGTAATCATGTCTAAATACTATAATACCCTAAATATTTCAATGTTCTTATGATATTTCATATTCTAAACTGCTTTTTTTTTTATCTTAAAGGGGACGAAAGATCATCTTGATACAGTCTAG

mRNA sequence

ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGGGACGAAAGATCATCTTGATACAGTCTAG

Coding sequence (CDS)

ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGGGACGAAAGATCATCTTGATACAGTCTAG

Protein sequence

MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLGTKDHLDTV
Homology
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BLAST of CsaV3_1G041670.1 vs. TrEMBL
Match: tr|A0A0A0LWU9|A0A0A0LWU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.1e-04
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MEAAAKRFQGLMVTXXXXXXXXXXXXXXXXXXXXXXXXXXXSDASLSIPTLMASFVPL 59
          MEAAAKRFQGLMVTXXXXXXXXXXXXXXXXXXXXXXXXXXXSDASLSIPTLMASFVPL
Sbjct: 1  MEAAAKRFQGLMVTXXXXXXXXXXXXXXXXXXXXXXXXXXXSDASLSIPTLMASFVPL 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G041670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G041670.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G041670.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G041670.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWU9|A0A0A0LWU9_CUCSA8.1e-04100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G041670CsaV3_1G041670gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G041670.1.exon1CsaV3_1G041670.1.exon1exon
CsaV3_1G041670.1.exon2CsaV3_1G041670.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G041670.1.cds1CsaV3_1G041670.1.cds1CDS
CsaV3_1G041670.1.cds2CsaV3_1G041670.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G041670.1CsaV3_1G041670.1-proteinpolypeptide