CsaV3_1G015540 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGGGGAAGTGCTTTAATAAGGACCACTATATAAGGAACAGAATATGTGTAGCTCTACAAAATTAAAACCAAACCCCCACACCCAAAAACCTCTCATTTTCGTTTTTGTGATTAATTCCATTTCAATATGGAACAACACTTAAGTGAAAGCAGCTTGAATCTGAATAATTATGATGTTATATTTAGATCAACATCATCATCCAAGAATTGCAGCAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGACTGTGTTTTGTTTGCTTTTAGGGCTGTTTTTTTCTCTCTTCTCTCTATTTCCTCATTCCTTTAGTGTCTATTTTTCAACTTTCCTCTTCTCCATTCTAACCCATGCTGTGGAAAGAAAATACATGTTCTTGATTTGTAATATTGGAATTCTTTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCCTCTTCTTTTGGGAATTATTGTCCATTTCCCCATTCCCGTCATAATCATCATCACAACTTATTTGAACATGATGTTGTGGCCGCTGTTGCCACTGATGAAGAATCTGATTCTGATCACACCCAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATATGTAGAGGTGAATTATTAGAAGAAGAATTAGAAGAAGATGAAGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGCACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGAAAAATGAAGGAGGAAATGAGAATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAATTTAATTAAGTTAAATGATTGCCTAATTAATCAATAATAATATTGATATTAATATTAATATTTTTATGGTCTAATAAACCTTTTTCTTTT ATGGAACAACACTTAAGTGAAAGCAGCTTGAATCTGAATAATTATGATGTTATATTTAGATCAACATCATCATCCAAGAATTGCAGCAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGACTGTGTTTTGTTTGCTTTTAGGGCTGTTTTTTTCTCTCTTCTCTCTATTTCCTCATTCCTTTAGTGTCTATTTTTCAACTTTCCTCTTCTCCATTCTAACCCATGCTGTGGAAAGAAAATACATGTTCTTGATTTGTAATATTGGAATTCTTTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCCTCTTCTTTTGGGAATTATTGTCCATTTCCCCATTCCCGTCATAATCATCATCACAACTTATTTGAACATGATGTTGTGGCCGCTGTTGCCACTGATGAAGAATCTGATTCTGATCACACCCAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATATGTAGAGGTGAATTATTAGAAGAAGAATTAGAAGAAGATGAAGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGCACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGAAAAATGAAGGAGGAAATGAGAATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA ATGGAACAACACTTAAGTGAAAGCAGCTTGAATCTGAATAATTATGATGTTATATTTAGATCAACATCATCATCCAAGAATTGCAGCAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGACTGTGTTTTGTTTGCTTTTAGGGCTGTTTTTTTCTCTCTTCTCTCTATTTCCTCATTCCTTTAGTGTCTATTTTTCAACTTTCCTCTTCTCCATTCTAACCCATGCTGTGGAAAGAAAATACATGTTCTTGATTTGTAATATTGGAATTCTTTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCCTCTTCTTTTGGGAATTATTGTCCATTTCCCCATTCCCGTCATAATCATCATCACAACTTATTTGAACATGATGTTGTGGCCGCTGTTGCCACTGATGAAGAATCTGATTCTGATCACACCCAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATATGTAGAGGTGAATTATTAGAAGAAGAATTAGAAGAAGATGAAGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGCACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGAAAAATGAAGGAGGAAATGAGAATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPHSFSVYFSTFLFSILTHAVERKYMFLICNIGILFLLATSSVSSSSSSSSFGNYCPFPHSRHNHHHNLFEHDVVAAVATDEESDSDHTQEEEEEKEEGICRGELLEEELEEDEGCFTDEVEEEEEEEEEDQKEGKRRELEIVVSTEELNKKIEEFIRKMKEEMRIEAAQTHLIAV
BLAST of CsaV3_1G015540 vs. NCBI nr
Match: XP_011648464.1 (PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus]) HSP 1 Score: 198.4 bits (503), Expect = 2.8e-47 Identity = 191/233 (81.97%), Postives = 191/233 (81.97%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. NCBI nr
Match: KGN64999.1 (hypothetical protein Csa_1G173190 [Cucumis sativus]) HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. NCBI nr
Match: XP_022927104.1 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucurbita moschata]) HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16 Identity = 173/243 (71.19%), Postives = 189/243 (77.78%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. NCBI nr
Match: EOY28957.1 (Uncharacterized protein TCM_030414 [Theobroma cacao]) HSP 1 Score: 63.9 bits (154), Expect = 8.2e-07 Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. NCBI nr
Match: XP_007026335.2 (PREDICTED: uncharacterized protein LOC18597319 [Theobroma cacao]) HSP 1 Score: 63.9 bits (154), Expect = 8.2e-07 Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. TAIR10
Match: AT3G13130.1 (unknown protein) HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04 Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. TrEMBL
Match: tr|A0A0A0LVQ2|A0A0A0LVQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. TrEMBL
Match: tr|A0A061GIF6|A0A061GIF6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030414 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 5.4e-07 Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. TrEMBL
Match: tr|A0A1U8IZG0|A0A1U8IZG0_GOSHI (uncharacterized protein LOC107900145 OS=Gossypium hirsutum OX=3635 GN=LOC107900145 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. TrEMBL
Match: tr|A0A1U8PRK1|A0A1U8PRK1_GOSHI (uncharacterized protein LOC107962075 OS=Gossypium hirsutum OX=3635 GN=LOC107962075 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06 Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0
BLAST of CsaV3_1G015540 vs. TrEMBL
Match: tr|A0A0D2VCB4|A0A0D2VCB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G189400 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |