Cla97C01G010660 (gene) Watermelon (97103) v2

Overview
NameCla97C01G010660
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionTransmembrane protein, putative
LocationCla97Chr01 : 16349687 .. 16350403 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCATAGGTTTGGATTCAAATGAAAGTTTGAATCTTTATGATGATAGAACATCATCAAAAAATTGTAGCAGCAAAGTTGAGAGGTTGAAAAGGATGGTGAAGTTGATTGTGTTTTCTTTGGTTTTTGCCTTGTTTTTTTCTCTCTTCTCTTTATTCCCTCATTCTTTCACTGTCTATTTCTCCACTTTCCTCTTCTCTTTCCTCAACCATGCCATGGAGAGAAAATACATGTTCTTAATTTGTAATGGAATCCTGTTTCTTCTAGCCACTTCCTCTGTTATTGAACATTCTTCTTCTTCTTCTTCTTCCTCTTCTTTTGGGTCTTGTTCTTTTCCCCACTCTCATCATCATCACTTTGAAGAATATGATCTTGTGGCTGCCATTGATGAATCTGATTCTGAGGAATCACAACACCAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTACAAAGTTGAATTAGAAGAAGACATTTACAAAGTTGAATTACAAGAAGACATTTACAAAGGTGACTTACAAGAAGATGAAGAGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGGAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGGAAAATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCAACTAATTGCAGTGTAA

mRNA sequence

ATGGAAGCCATAGGTTTGGATTCAAATGAAAGTTTGAATCTTTATGATGATAGAACATCATCAAAAAATTGTAGCAGCAAAGTTGAGAGGTTGAAAAGGATGGTGAAGTTGATTGTGTTTTCTTTGGTTTTTGCCTTGTTTTTTTCTCTCTTCTCTTTATTCCCTCATTCTTTCACTGTCTATTTCTCCACTTTCCTCTTCTCTTTCCTCAACCATGCCATGGAGAGAAAATACATGTTCTTAATTTGTAATGGAATCCTGTTTCTTCTAGCCACTTCCTCTGTTATTGAACATTCTTCTTCTTCTTCTTCTTCCTCTTCTTTTGGGTCTTGTTCTTTTCCCCACTCTCATCATCATCACTTTGAAGAATATGATCTTGTGGCTGCCATTGATGAATCTGATTCTGAGGAATCACAACACCAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTACAAAGTTGAATTAGAAGAAGACATTTACAAAGTTGAATTACAAGAAGACATTTACAAAGGTGACTTACAAGAAGATGAAGAGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGGAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGGAAAATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCAACTAATTGCAGTGTAA

Coding sequence (CDS)

ATGGAAGCCATAGGTTTGGATTCAAATGAAAGTTTGAATCTTTATGATGATAGAACATCATCAAAAAATTGTAGCAGCAAAGTTGAGAGGTTGAAAAGGATGGTGAAGTTGATTGTGTTTTCTTTGGTTTTTGCCTTGTTTTTTTCTCTCTTCTCTTTATTCCCTCATTCTTTCACTGTCTATTTCTCCACTTTCCTCTTCTCTTTCCTCAACCATGCCATGGAGAGAAAATACATGTTCTTAATTTGTAATGGAATCCTGTTTCTTCTAGCCACTTCCTCTGTTATTGAACATTCTTCTTCTTCTTCTTCTTCCTCTTCTTTTGGGTCTTGTTCTTTTCCCCACTCTCATCATCATCACTTTGAAGAATATGATCTTGTGGCTGCCATTGATGAATCTGATTCTGAGGAATCACAACACCAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTACAAAGTTGAATTAGAAGAAGACATTTACAAAGTTGAATTACAAGAAGACATTTACAAAGGTGACTTACAAGAAGATGAAGAGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGGAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGGAAAATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCAACTAATTGCAGTGTAA

Protein sequence

MEAIGLDSNESLNLYDDRTSSKNCSSKVERLKRMVKLIVFSLVFALFFSLFSLFPHSFTVYFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIEHSSSSSSSSSFGSCSFPHSHHHHFEEYDLVAAIDESDSEESQHQNQEEEEEEEEEEEEEEIYKVELEEDIYKVELQEDIYKGDLQEDEECFTEEEEEEEGKRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQTQLIAV
Homology
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BLAST of Cla97C01G010660 vs. NCBI nr
Match: XP_011648464.1 (PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 208 TEELNKKIEEFIRKMKEEMRIEAAQTQLIAV 239
           TEELNKKIEEFIRKMKEEMRIEAAQT LIAV
Sbjct: 171 TEELNKKIEEFIRKMKEEMRIEAAQTHLIAV 201

The following BLAST results are available for this feature:
BLAST of Cla97C01G010660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648464.11.7e-0496.77PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus][more]
BLAST of Cla97C01G010660 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C01G010660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G010660 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G010660.1Cla97C01G010660.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..166
NoneNo IPR availableCOILSCoilCoilcoord: 208..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..201
NoneNo IPR availablePANTHERPTHR34947FAMILY NOT NAMEDcoord: 23..238

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G010660Cla010971Watermelon (97103) v1wmwmbB246
Cla97C01G010660Csa1G173190Cucumber (Chinese Long) v2cuwmbB009
Cla97C01G010660MELO3C026071Melon (DHL92) v3.5.1mewmbB145
Cla97C01G010660ClCG01G010940Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G010660CSPI01G15380Wild cucumber (PI 183967)cpiwmbB009
Cla97C01G010660Lsi02G011600Bottle gourd (USVL1VR-Ls)lsiwmbB159
Cla97C01G010660CsGy1G015140Cucumber (Gy14) v2cgybwmbB009
Cla97C01G010660MELO3C026071.2Melon (DHL92) v3.6.1medwmbB134
Cla97C01G010660CsaV3_1G015540Cucumber (Chinese Long) v3cucwmbB008
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G010660Silver-seed gourdcarwmbB0050
Cla97C01G010660Silver-seed gourdcarwmbB0778
Cla97C01G010660Cucumber (Gy14) v1cgywmbB325
Cla97C01G010660Cucumber (Gy14) v1cgywmbB557
Cla97C01G010660Cucurbita maxima (Rimu)cmawmbB394
Cla97C01G010660Cucurbita moschata (Rifu)cmowmbB042
Cla97C01G010660Cucurbita moschata (Rifu)cmowmbB380
Cla97C01G010660Bottle gourd (USVL1VR-Ls)lsiwmbB153
Cla97C01G010660Melon (DHL92) v3.6.1medwmbB126
Cla97C01G010660Melon (DHL92) v3.5.1mewmbB138
Cla97C01G010660Watermelon (97103) v1wmwmbB239
Cla97C01G010660Wax gourdwgowmbB460