Cla97C01G010660.1 (mRNA) Watermelon (97103) v2

NameCla97C01G010660.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionTransmembrane protein, putative
LocationCla97Chr01 : 16349687 .. 16350403 (+)
Sequence length717
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCATAGGTTTGGATTCAAATGAAAGTTTGAATCTTTATGATGATAGAACATCATCAAAAAATTGTAGCAGCAAAGTTGAGAGGTTGAAAAGGATGGTGAAGTTGATTGTGTTTTCTTTGGTTTTTGCCTTGTTTTTTTCTCTCTTCTCTTTATTCCCTCATTCTTTCACTGTCTATTTCTCCACTTTCCTCTTCTCTTTCCTCAACCATGCCATGGAGAGAAAATACATGTTCTTAATTTGTAATGGAATCCTGTTTCTTCTAGCCACTTCCTCTGTTATTGAACATTCTTCTTCTTCTTCTTCTTCCTCTTCTTTTGGGTCTTGTTCTTTTCCCCACTCTCATCATCATCACTTTGAAGAATATGATCTTGTGGCTGCCATTGATGAATCTGATTCTGAGGAATCACAACACCAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTACAAAGTTGAATTAGAAGAAGACATTTACAAAGTTGAATTACAAGAAGACATTTACAAAGGTGACTTACAAGAAGATGAAGAGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGGAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGGAAAATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCAACTAATTGCAGTGTAA

mRNA sequence

ATGGAAGCCATAGGTTTGGATTCAAATGAAAGTTTGAATCTTTATGATGATAGAACATCATCAAAAAATTGTAGCAGCAAAGTTGAGAGGTTGAAAAGGATGGTGAAGTTGATTGTGTTTTCTTTGGTTTTTGCCTTGTTTTTTTCTCTCTTCTCTTTATTCCCTCATTCTTTCACTGTCTATTTCTCCACTTTCCTCTTCTCTTTCCTCAACCATGCCATGGAGAGAAAATACATGTTCTTAATTTGTAATGGAATCCTGTTTCTTCTAGCCACTTCCTCTGTTATTGAACATTCTTCTTCTTCTTCTTCTTCCTCTTCTTTTGGGTCTTGTTCTTTTCCCCACTCTCATCATCATCACTTTGAAGAATATGATCTTGTGGCTGCCATTGATGAATCTGATTCTGAGGAATCACAACACCAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTACAAAGTTGAATTAGAAGAAGACATTTACAAAGTTGAATTACAAGAAGACATTTACAAAGGTGACTTACAAGAAGATGAAGAGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGGAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGGAAAATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCAACTAATTGCAGTGTAA

Coding sequence (CDS)

ATGGAAGCCATAGGTTTGGATTCAAATGAAAGTTTGAATCTTTATGATGATAGAACATCATCAAAAAATTGTAGCAGCAAAGTTGAGAGGTTGAAAAGGATGGTGAAGTTGATTGTGTTTTCTTTGGTTTTTGCCTTGTTTTTTTCTCTCTTCTCTTTATTCCCTCATTCTTTCACTGTCTATTTCTCCACTTTCCTCTTCTCTTTCCTCAACCATGCCATGGAGAGAAAATACATGTTCTTAATTTGTAATGGAATCCTGTTTCTTCTAGCCACTTCCTCTGTTATTGAACATTCTTCTTCTTCTTCTTCTTCCTCTTCTTTTGGGTCTTGTTCTTTTCCCCACTCTCATCATCATCACTTTGAAGAATATGATCTTGTGGCTGCCATTGATGAATCTGATTCTGAGGAATCACAACACCAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTACAAAGTTGAATTAGAAGAAGACATTTACAAAGTTGAATTACAAGAAGACATTTACAAAGGTGACTTACAAGAAGATGAAGAGTGTTTTACAGAAGAAGAAGAAGAAGAAGAAGGAAAAAGGAGGGAATTAGAGGTGGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGGAAAATGAAGGAAGAAATGAGGATTGAAGCAGCTCAAACTCAACTAATTGCAGTGTAA

Protein sequence

MEAIGLDSNESLNLYDDRTSSKNCSSKVERLKRMVKLIVFSLVFALFFSLFSLFPHSFTVYFSTFLFSFLNHAMERKYMFLICNGILFLLATSSVIEHSSSSSSSSSFGSCSFPHSHHHHFEEYDLVAAIDESDSEESQHQNQEEEEEEEEEEEEEEIYKVELEEDIYKVELQEDIYKGDLQEDEECFTEEEEEEEGKRRELEVVVSTEELNKKIEEFIRKMKEEMRIEAAQTQLIAV
BLAST of Cla97C01G010660.1 vs. NCBI nr
Match: XP_011648464.1 (PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0

Query: 208 TEELNKKIEEFIRKMKEEMRIEAAQTQLIAV 239
           TEELNKKIEEFIRKMKEEMRIEAAQT LIAV
Sbjct: 171 TEELNKKIEEFIRKMKEEMRIEAAQTHLIAV 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011648464.11.7e-0496.77PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C01G010660Cla97C01G010660gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C01G010660.1.exon.1Cla97C01G010660.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C01G010660.1.CDS.1Cla97C01G010660.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C01G010660.1Cla97C01G010660.1-proteinpolypeptide


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..166
NoneNo IPR availableCOILSCoilCoilcoord: 208..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..201
NoneNo IPR availablePANTHERPTHR34947FAMILY NOT NAMEDcoord: 23..238