MELO3C026071.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C026071.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTransmembrane protein, putative
Locationchr12 : 14962821 .. 14963710 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTACAAAATTAAAACCATACCCCCACCCAAAAACCTCTCATTTTCGTTTTTGTGATTAATTCCATTTCTATATGGAACAACTCTCAATTGAAAGCAGCTTGAATCTTAATAATCATGATGATATATTTACAACATCATCATCATCAAAGAATTGCAGCAGCAAAGTTGAATGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTTGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTAGTGTCTACTTTTCAACTTTCCTCTTCTCCATTCTAAACCATGCCATGGAAAGAAAATACATGTTCTTAATTTGTAATATTGGAATTCTGTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCTTTTGGGAATTATTGTTCATTTCCCCATTCCCATCATAATCATCATGACAACTTATTTGAACATGATGTTATGGCCGCTGCTGCCATTGATGAAGAATCTGATTCTGACCAGGCTCAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATAATTTGTAGAGGTGAATTATTAGTGGAAGAATTAGAAGAAGATGAAGAAGGGTGTTTTACAGATGAGGCTGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAATTTGATCAAGTTAAATATTGCCTAATTATATCAATATTAATTATGTCAATATATTTGTGCTCTAATAAACTTTTTCTTTTATATATACAGTTTTTTTAATTCTCTTCC

mRNA sequence

CTACAAAATTAAAACCATACCCCCACCCAAAAACCTCTCATTTTCGTTTTTGTGATTAATTCCATTTCTATATGGAACAACTCTCAATTGAAAGCAGCTTGAATCTTAATAATCATGATGATATATTTACAACATCATCATCATCAAAGAATTGCAGCAGCAAAGTTGAATGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTTGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTAGTGTCTACTTTTCAACTTTCCTCTTCTCCATTCTAAACCATGCCATGGAAAGAAAATACATGTTCTTAATTTGTAATATTGGAATTCTGTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCTTTTGGGAATTATTGTTCATTTCCCCATTCCCATCATAATCATCATGACAACTTATTTGAACATGATGTTATGGCCGCTGCTGCCATTGATGAAGAATCTGATTCTGACCAGGCTCAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATAATTTGTAGAGGTGAATTATTAGTGGAAGAATTAGAAGAAGATGAAGAAGGGTGTTTTACAGATGAGGCTGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAATTTGATCAAGTTAAATATTGCCTAATTATATCAATATTAATTATGTCAATATATTTGTGCTCTAATAAACTTTTTCTTTTATATATACAGTTTTTTTAATTCTCTTCC

Coding sequence (CDS)

ATGGAACAACTCTCAATTGAAAGCAGCTTGAATCTTAATAATCATGATGATATATTTACAACATCATCATCATCAAAGAATTGCAGCAGCAAAGTTGAATGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTTGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTAGTGTCTACTTTTCAACTTTCCTCTTCTCCATTCTAAACCATGCCATGGAAAGAAAATACATGTTCTTAATTTGTAATATTGGAATTCTGTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCTTTTGGGAATTATTGTTCATTTCCCCATTCCCATCATAATCATCATGACAACTTATTTGAACATGATGTTATGGCCGCTGCTGCCATTGATGAAGAATCTGATTCTGACCAGGCTCAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATAATTTGTAGAGGTGAATTATTAGTGGAAGAATTAGAAGAAGATGAAGAAGGGTGTTTTACAGATGAGGCTGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAAGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

Protein sequence

MEQLSIESSLNLNNHDDIFTTSSSSKNCSSKVEWLKRMVKLIVFCFVLGLFFSVFSLFPHSFSVYFSTFLFSILNHAMERKYMFLICNIGILFLLATSSVSSSSSSFGNYCSFPHSHHNHHDNLFEHDVMAAAAIDEESDSDQAQEEEEEEEEEEEEEEKEEGIICRGELLVEELEEDEEGCFTDEAEEEDQKEGKRRELEIVVSTEELNKKIEDFIRKMKEEMRIEAAQTHLIAV
Homology
[Close]
BLAST of MELO3C026071.2 vs. NCBI nr
Match: XP_011648464.1 (PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.9e-38
Identity = 171/236 (72.46%), Postives = 179/236 (75.85%), Query Frame = 0 

Query: 1   MEQLSIESSLNLNNHDDIFTTSSSSKNCSSKVEWLKRMVKLIVFCFVLGLFFSVFSLFPH 60
           MEQ   ESSLNLNN+D IF ++SSSKNCSSKVEWLKRMVKL VFC +LGLFFS+FSLFPH
Sbjct: 1   MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61  SFSVYFSTFLFSILNHAMERKYMFLICNIGILFLLAXXXXXXXXXXXXXXXXXXXXXXXX 120
           SFSVYFSTFLFSIL HA+ERKYMFLICNIGILFL        XXXXXXXXXXXXXXXXXX
Sbjct: 61  SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL--------XXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXFEHDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICRGELLVXXXXXXXX 180
           XXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ICRG+           
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICRGK----------- 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXSTEELNKKIEDFIRKMKEEMRIEAAQTHLIAV 237
                                   STEELNKKIE+FIRKMKEEMRIEAAQTHLIAV
Sbjct: 181 ----------------RRELEIVVSTEELNKKIEEFIRKMKEEMRIEAAQTHLIAV 201

[Close]
BLAST of MELO3C026071.2 vs. NCBI nr
Match: KGN64999.1 (hypothetical protein Csa_1G173190 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-33
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 0 

Query: 1  MEQLSIESSLNLNNHDDIFTTSSSSKNCSSKVEWLKRMVKLIVFCFVLGLFFSVFSLFPH 60
          MEQ   ESSLNLNN+D IF ++SSSKNCSSKVEWLKRMVKL VFC +LGLFFS+FSLFPH
Sbjct: 1  MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61 SFSVYFSTFLFSILNHAMERKYMFLICNIGILFL 95
          SFSVYFSTFLFSIL HA+ERKYMFLICNIGILFL
Sbjct: 61 SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL 94

[Close]
BLAST of MELO3C026071.2 vs. NCBI nr
Match: XP_022927104.1 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucurbita moschata])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 159/243 (65.43%), Postives = 173/243 (71.19%), Query Frame = 0 

Query: 9   SLNLNNHDDIFTTSSSSKNCSSKVEWLKRMVKLI----VFCFVLGLFFSVFSLFPHSFSV 68
           ++N+++++ +    +SS N  + VE LKRMVK I    VF  VL LFFS FSLFPHSF+V
Sbjct: 7   AINMDSYESLDLDRTSSTN--NNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFTV 66

Query: 69  YFSTFLFSILNHAMERKYMFLICNIGILFLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXX 128
           YFSTFLFS+LNH MERK+MFLICN GILFLLA        XXXXXXXXXXXXXXXXXXXX
Sbjct: 67  YFSTFLFSLLNHGMERKFMFLICN-GILFLLATSSVLQDSXXXXXXXXXXXXXXXXXXXX 126

Query: 129 FEH----------DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXICRGELLVXX 188
                        D        XXXXXXXXXXXXXXXXXXXXXXXXXXXX        XX
Sbjct: 127 XXXXXXXXXXLVADASDGYDSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 186

Query: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEELNKKIEDFIRKMKEEMRIEAAQT-HL 237
           XXXXXX    XXXXXXXXXXXXXX      STEELNKKIE+FIRKMKEEMRIEAAQT  L
Sbjct: 187 XXXXXXGCFTXXXXXXXXXXXXXXDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQTQQL 246

[Close]
BLAST of MELO3C026071.2 vs. NCBI nr
Match: EOY28957.1 (Uncharacterized protein TCM_030414 [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-07
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 34 WLKRMVKLIVFCFVLGLFF---SVFSLFPHSFSVYFSTFLFSILNHAMERKYMFLICNIG 93
          +LKR ++L+V   +L  F    S F +FPHSFSVYFSTFLFS   H +ERKYMFLICN G
Sbjct: 22 FLKRTLQLVVSVALLSFFLCHSSGFFVFPHSFSVYFSTFLFSFFTHTLERKYMFLICN-G 81

Query: 94 ILFLLA 97
          IL  LA
Sbjct: 82 ILAFLA 86

[Close]
BLAST of MELO3C026071.2 vs. NCBI nr
Match: XP_007026335.2 (PREDICTED: uncharacterized protein LOC18597319 [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-07
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 34 WLKRMVKLIVFCFVLGLFF---SVFSLFPHSFSVYFSTFLFSILNHAMERKYMFLICNIG 93
          +LKR ++L+V   +L  F    S F +FPHSFSVYFSTFLFS   H +ERKYMFLICN G
Sbjct: 22 FLKRTLQLVVSVALLSFFLCHSSGFFVFPHSFSVYFSTFLFSFFTHTLERKYMFLICN-G 81

Query: 94 ILFLLA 97
          IL  LA
Sbjct: 82 ILAFLA 86

[Close]
BLAST of MELO3C026071.2 vs. TrEMBL
Match: tr|A0A0A0LVQ2|A0A0A0LVQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.8e-33
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 0 

Query: 1  MEQLSIESSLNLNNHDDIFTTSSSSKNCSSKVEWLKRMVKLIVFCFVLGLFFSVFSLFPH 60
          MEQ   ESSLNLNN+D IF ++SSSKNCSSKVEWLKRMVKL VFC +LGLFFS+FSLFPH
Sbjct: 1  MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61 SFSVYFSTFLFSILNHAMERKYMFLICNIGILFL 95
          SFSVYFSTFLFSIL HA+ERKYMFLICNIGILFL
Sbjct: 61 SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL 94

[Close]
BLAST of MELO3C026071.2 vs. TrEMBL
Match: tr|A0A061GIF6|A0A061GIF6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030414 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 34 WLKRMVKLIVFCFVLGLFF---SVFSLFPHSFSVYFSTFLFSILNHAMERKYMFLICNIG 93
          +LKR ++L+V   +L  F    S F +FPHSFSVYFSTFLFS   H +ERKYMFLICN G
Sbjct: 22 FLKRTLQLVVSVALLSFFLCHSSGFFVFPHSFSVYFSTFLFSFFTHTLERKYMFLICN-G 81

Query: 94 ILFLLA 97
          IL  LA
Sbjct: 82 ILAFLA 86

[Close]
BLAST of MELO3C026071.2 vs. TrEMBL
Match: tr|A0A2N9F0A3|A0A2N9F0A3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8193 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-06
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 30 SKVEWLKRMVKLIVF--------CFVLGLFFSVFSLFPHSFSVYFSTFLFSILNHAMERK 89
          +K ++LKR + L+ +        C+ LG     F  FPHS++VYFSTFLFS+  HA+E K
Sbjct: 14 NKFQFLKRTLHLVFYVSLITLLLCYTLG-----FHFFPHSYNVYFSTFLFSLFTHALETK 73

Query: 90 YMFLICNIGILFLLA 97
          YMFLICN  ++ +LA
Sbjct: 74 YMFLICNGILVAILA 83

[Close]
BLAST of MELO3C026071.2 vs. TrEMBL
Match: tr|A0A1U8IZG0|A0A1U8IZG0_GOSHI (uncharacterized protein LOC107900145 OS=Gossypium hirsutum OX=3635 GN=LOC107900145 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-06
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 31 KVEWLKRMVKLIVFCFVLGLFF-----SVFSLFPHSFSVYFSTFLFSILNHAMERKYMFL 90
          K  +L+  ++++V+   L +F        +SLFPHSF+VYFSTFLFS   H +ERKYMF+
Sbjct: 17 KYHFLRNTLQIVVWVSFLSIFLCHSSGMAYSLFPHSFNVYFSTFLFSFFTHTVERKYMFI 76

Query: 91 ICNIGILFLLA 97
          ICN GIL  +A
Sbjct: 77 ICN-GILAFVA 86

[Close]
BLAST of MELO3C026071.2 vs. TrEMBL
Match: tr|A0A0D2VCB4|A0A0D2VCB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G189400 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.5e-06
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 31 KVEWLKRMVKLIVFCFVLGLFF-----SVFSLFPHSFSVYFSTFLFSILNHAMERKYMFL 90
          K  +L+  ++++V+   L +F        +SLFPHSF+VYFSTFLFS   H +ERKYMF+
Sbjct: 17 KYHFLRNTLQIVVWVSFLSIFLCHSSGMAYSLFPHSFNVYFSTFLFSFFTHTVERKYMFI 76

Query: 91 ICNIGILFLLA 97
          ICN GIL  +A
Sbjct: 77 ICN-GILAFVA 86

The following BLAST results are available for this feature:
BLAST of MELO3C026071.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648464.16.9e-3872.46PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus][more]
KGN64999.18.7e-3385.11hypothetical protein Csa_1G173190 [Cucumis sativus][more]
XP_022927104.11.1e-1665.43X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucur... [more]
EOY28957.14.8e-0760.61Uncharacterized protein TCM_030414 [Theobroma cacao][more]
XP_007026335.24.8e-0760.61PREDICTED: uncharacterized protein LOC18597319 [Theobroma cacao][more]
BLAST of MELO3C026071.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C026071.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C026071.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVQ2|A0A0A0LVQ2_CUCSA5.8e-3385.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1[more]
tr|A0A061GIF6|A0A061GIF6_THECC3.2e-0760.61Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030414 PE=4 SV=1[more]
tr|A0A2N9F0A3|A0A2N9F0A3_FAGSY3.5e-0646.67Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8193 PE=4 SV=1[more]
tr|A0A1U8IZG0|A0A1U8IZG0_GOSHI3.5e-0649.30uncharacterized protein LOC107900145 OS=Gossypium hirsutum OX=3635 GN=LOC1079001... [more]
tr|A0A0D2VCB4|A0A0D2VCB4_GOSRA3.5e-0649.30Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G189400 PE=4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026071.2.1MELO3C026071.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 134..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..162
NoneNo IPR availablePANTHERPTHR34947FAMILY NOT NAMEDcoord: 28..235

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C026071.2Csa1G173190Cucumber (Chinese Long) v2cumedB016
MELO3C026071.2CSPI01G15380Wild cucumber (PI 183967)cpimedB017
MELO3C026071.2Lsi02G011600Bottle gourd (USVL1VR-Ls)lsimedB186
MELO3C026071.2CsGy1G015140Cucumber (Gy14) v2cgybmedB015
MELO3C026071.2Cla010971Watermelon (97103) v1medwmB156
MELO3C026071.2ClCG01G010940Watermelon (Charleston Gray)medwcgB135
MELO3C026071.2Cla97C01G010660Watermelon (97103) v2medwmbB134
MELO3C026071.2Carg26516Silver-seed gourdcarmedB0968
MELO3C026071.2CsaV3_1G015540Cucumber (Chinese Long) v3cucmedB015
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026071.2Cucumber (Gy14) v1cgymedB527
MELO3C026071.2Cucumber (Gy14) v1cgymedB529
MELO3C026071.2Cucurbita maxima (Rimu)cmamedB421
MELO3C026071.2Watermelon (97103) v1medwmB162
MELO3C026071.2Cucumber (Chinese Long) v3cucmedB025
MELO3C026071.2Wax gourdmedwgoB174