CsaV3_1G015540.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015540.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein
Locationchr1 : 11063822 .. 11064739 (-)
Sequence length702
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGAAGTGCTTTAATAAGGACCACTATATAAGGAACAGAATATGTGTAGCTCTACAAAATTAAAACCAAACCCCCACACCCAAAAACCTCTCATTTTCGTTTTTGTGATTAATTCCATTTCAATATGGAACAACACTTAAGTGAAAGCAGCTTGAATCTGAATAATTATGATGTTATATTTAGATCAACATCATCATCCAAGAATTGCAGCAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGACTGTGTTTTGTTTGCTTTTAGGGCTGTTTTTTTCTCTCTTCTCTCTATTTCCTCATTCCTTTAGTGTCTATTTTTCAACTTTCCTCTTCTCCATTCTAACCCATGCTGTGGAAAGAAAATACATGTTCTTGATTTGTAATATTGGAATTCTTTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCCTCTTCTTTTGGGAATTATTGTCCATTTCCCCATTCCCGTCATAATCATCATCACAACTTATTTGAACATGATGTTGTGGCCGCTGTTGCCACTGATGAAGAATCTGATTCTGATCACACCCAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATATGTAGAGGTGAATTATTAGAAGAAGAATTAGAAGAAGATGAAGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGCACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGAAAAATGAAGGAGGAAATGAGAATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAATTTAATTAAGTTAAATGATTGCCTAATTAATCAATAATAATATTGATATTAATATTAATATTTTTATGGTCTAATAAACCTTTTTCTTTT

mRNA sequence

ATGGAACAACACTTAAGTGAAAGCAGCTTGAATCTGAATAATTATGATGTTATATTTAGATCAACATCATCATCCAAGAATTGCAGCAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGACTGTGTTTTGTTTGCTTTTAGGGCTGTTTTTTTCTCTCTTCTCTCTATTTCCTCATTCCTTTAGTGTCTATTTTTCAACTTTCCTCTTCTCCATTCTAACCCATGCTGTGGAAAGAAAATACATGTTCTTGATTTGTAATATTGGAATTCTTTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCCTCTTCTTTTGGGAATTATTGTCCATTTCCCCATTCCCGTCATAATCATCATCACAACTTATTTGAACATGATGTTGTGGCCGCTGTTGCCACTGATGAAGAATCTGATTCTGATCACACCCAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATATGTAGAGGTGAATTATTAGAAGAAGAATTAGAAGAAGATGAAGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGCACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGAAAAATGAAGGAGGAAATGAGAATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

Coding sequence (CDS)

ATGGAACAACACTTAAGTGAAAGCAGCTTGAATCTGAATAATTATGATGTTATATTTAGATCAACATCATCATCCAAGAATTGCAGCAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGACTGTGTTTTGTTTGCTTTTAGGGCTGTTTTTTTCTCTCTTCTCTCTATTTCCTCATTCCTTTAGTGTCTATTTTTCAACTTTCCTCTTCTCCATTCTAACCCATGCTGTGGAAAGAAAATACATGTTCTTGATTTGTAATATTGGAATTCTTTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCCTCTTCTTTTGGGAATTATTGTCCATTTCCCCATTCCCGTCATAATCATCATCACAACTTATTTGAACATGATGTTGTGGCCGCTGTTGCCACTGATGAAGAATCTGATTCTGATCACACCCAAGAAGAAGAAGAAGAAAAGGAAGAAGGAATATGTAGAGGTGAATTATTAGAAGAAGAATTAGAAGAAGATGAAGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGCACAGAAGAATTGAACAAGAAAATTGAAGAGTTTATTAGAAAAATGAAGGAGGAAATGAGAATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

Protein sequence

MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPHSFSVYFSTFLFSILTHAVERKYMFLICNIGILFLLATSSVSSSSSSSSFGNYCPFPHSRHNHHHNLFEHDVVAAVATDEESDSDHTQEEEEEKEEGICRGELLEEELEEDEGCFTDEVEEEEEEEEEDQKEGKRRELEIVVSTEELNKKIEEFIRKMKEEMRIEAAQTHLIAV
Homology
[Close]
BLAST of CsaV3_1G015540.1 vs. NCBI nr
Match: XP_011648464.1 (PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 2.8e-47
Identity = 191/233 (81.97%), Postives = 191/233 (81.97%), Query Frame = 0 

Query: 1   MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60
           MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH
Sbjct: 1   MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61  SFSVYFSTFLFSILTHAVERKYMFLICNIGILFLXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL                          
Sbjct: 61  SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL-------------------------- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 ------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXEIVVSTEELNKKIEEFIRKMKEEMRIEAAQTHLIAV 234
           XXXXXXX          EIVVSTEELNKKIEEFIRKMKEEMRIEAAQTHLIAV
Sbjct: 181 XXXXXXXGICRGKRRELEIVVSTEELNKKIEEFIRKMKEEMRIEAAQTHLIAV 201

[Close]
BLAST of CsaV3_1G015540.1 vs. NCBI nr
Match: KGN64999.1 (hypothetical protein Csa_1G173190 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60
          MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH
Sbjct: 1  MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61 SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL 95
          SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL
Sbjct: 61 SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL 94

[Close]
BLAST of CsaV3_1G015540.1 vs. NCBI nr
Match: XP_022927104.1 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 173/243 (71.19%), Postives = 189/243 (77.78%), Query Frame = 0 

Query: 9   SLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVK----LTVFCLLLGLFFSLFSLFPHSFSV 68
           ++N+++Y+ +    +SS N  + VE LKRMVK    + VF L+L LFFS FSLFPHSF+V
Sbjct: 7   AINMDSYESLDLDRTSSTN--NNVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFTV 66

Query: 69  YFSTFLFSILTHAVERKYMFLICNIGILFL-------------XXXXXXXXXXXXXXXXX 128
           YFSTFLFS+L H +ERK+MFLICN GILFL             XXXXXXXXXXXXXXXXX
Sbjct: 67  YFSTFLFSLLNHGMERKFMFLICN-GILFLLATSSVLQDSXXXXXXXXXXXXXXXXXXXX 126

Query: 129 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 188
           XXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 127 XXXXXXXXXXLVADASDGYDSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 186

Query: 189 XXXXXXXXXXXXXXXXXXXXXXXXXXEIVVSTEELNKKIEEFIRKMKEEMRIEAAQT-HL 234
           XXXXXX    XXXXXXXXXXXXXX  E+VVSTEELNKKIEEFIRKMKEEMRIEAAQT  L
Sbjct: 187 XXXXXXGCFTXXXXXXXXXXXXXXDLEVVVSTEELNKKIEEFIRKMKEEMRIEAAQTQQL 246

[Close]
BLAST of CsaV3_1G015540.1 vs. NCBI nr
Match: EOY28957.1 (Uncharacterized protein TCM_030414 [Theobroma cacao])

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-07
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 34 WLKRMVKLTVFCLLLGLFF---SLFSLFPHSFSVYFSTFLFSILTHAVERKYMFLICNIG 93
          +LKR ++L V   LL  F    S F +FPHSFSVYFSTFLFS  TH +ERKYMFLICN  
Sbjct: 22 FLKRTLQLVVSVALLSFFLCHSSGFFVFPHSFSVYFSTFLFSFFTHTLERKYMFLICNGI 81

Query: 94 ILFL 95
          + FL
Sbjct: 82 LAFL 85

[Close]
BLAST of CsaV3_1G015540.1 vs. NCBI nr
Match: XP_007026335.2 (PREDICTED: uncharacterized protein LOC18597319 [Theobroma cacao])

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-07
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 34 WLKRMVKLTVFCLLLGLFF---SLFSLFPHSFSVYFSTFLFSILTHAVERKYMFLICNIG 93
          +LKR ++L V   LL  F    S F +FPHSFSVYFSTFLFS  TH +ERKYMFLICN  
Sbjct: 22 FLKRTLQLVVSVALLSFFLCHSSGFFVFPHSFSVYFSTFLFSFFTHTLERKYMFLICNGI 81

Query: 94 ILFL 95
          + FL
Sbjct: 82 LAFL 85

[Close]
BLAST of CsaV3_1G015540.1 vs. TAIR10
Match: AT3G13130.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 3.5e-04
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 199 IVVST-EELNKKIEEFIRKMKEEMRIEAAQTHLIAV 234
           ++ ST EE+NKK +EFIRKMKEE+RIE A+ HLI V
Sbjct: 167 VMTSTEEEMNKKFDEFIRKMKEELRIE-AKRHLILV 201

[Close]
BLAST of CsaV3_1G015540.1 vs. TrEMBL
Match: tr|A0A0A0LVQ2|A0A0A0LVQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60
          MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH
Sbjct: 1  MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61 SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL 95
          SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL
Sbjct: 61 SFSVYFSTFLFSILTHAVERKYMFLICNIGILFL 94

[Close]
BLAST of CsaV3_1G015540.1 vs. TrEMBL
Match: tr|A0A061GIF6|A0A061GIF6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030414 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-07
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 34 WLKRMVKLTVFCLLLGLFF---SLFSLFPHSFSVYFSTFLFSILTHAVERKYMFLICNIG 93
          +LKR ++L V   LL  F    S F +FPHSFSVYFSTFLFS  TH +ERKYMFLICN  
Sbjct: 22 FLKRTLQLVVSVALLSFFLCHSSGFFVFPHSFSVYFSTFLFSFFTHTLERKYMFLICNGI 81

Query: 94 ILFL 95
          + FL
Sbjct: 82 LAFL 85

[Close]
BLAST of CsaV3_1G015540.1 vs. TrEMBL
Match: tr|A0A1U8IZG0|A0A1U8IZG0_GOSHI (uncharacterized protein LOC107900145 OS=Gossypium hirsutum OX=3635 GN=LOC107900145 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 31 KVEWLKRMVKLTVFCLLLGLFF-----SLFSLFPHSFSVYFSTFLFSILTHAVERKYMFL 90
          K  +L+  +++ V+   L +F        +SLFPHSF+VYFSTFLFS  TH VERKYMF+
Sbjct: 17 KYHFLRNTLQIVVWVSFLSIFLCHSSGMAYSLFPHSFNVYFSTFLFSFFTHTVERKYMFI 76

Query: 91 ICNIGIL 93
          ICN GIL
Sbjct: 77 ICN-GIL 82

[Close]
BLAST of CsaV3_1G015540.1 vs. TrEMBL
Match: tr|A0A1U8PRK1|A0A1U8PRK1_GOSHI (uncharacterized protein LOC107962075 OS=Gossypium hirsutum OX=3635 GN=LOC107962075 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 31 KVEWLKRMVKLTVFCLLLGLFF-----SLFSLFPHSFSVYFSTFLFSILTHAVERKYMFL 90
          K  +L+  +++ V+   L +F        +SLFPHSF+VYFSTFLFS  TH VERKYMFL
Sbjct: 17 KYHFLRNTLQIVVWVAFLSVFLCHSSGMAYSLFPHSFNVYFSTFLFSSFTHTVERKYMFL 76

Query: 91 ICNIGIL 93
          ICN GIL
Sbjct: 77 ICN-GIL 82

[Close]
BLAST of CsaV3_1G015540.1 vs. TrEMBL
Match: tr|A0A0D2VCB4|A0A0D2VCB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G189400 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 31 KVEWLKRMVKLTVFCLLLGLFF-----SLFSLFPHSFSVYFSTFLFSILTHAVERKYMFL 90
          K  +L+  +++ V+   L +F        +SLFPHSF+VYFSTFLFS  TH VERKYMF+
Sbjct: 17 KYHFLRNTLQIVVWVSFLSIFLCHSSGMAYSLFPHSFNVYFSTFLFSFFTHTVERKYMFI 76

Query: 91 ICNIGIL 93
          ICN GIL
Sbjct: 77 ICN-GIL 82

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648464.12.8e-4781.97PREDICTED: uncharacterized protein LOC105434473 [Cucumis sativus][more]
KGN64999.13.0e-41100.00hypothetical protein Csa_1G173190 [Cucumis sativus][more]
XP_022927104.11.9e-1671.19X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucur... [more]
EOY28957.18.2e-0760.94Uncharacterized protein TCM_030414 [Theobroma cacao][more]
XP_007026335.28.2e-0760.94PREDICTED: uncharacterized protein LOC18597319 [Theobroma cacao][more]
BLAST of CsaV3_1G015540.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13130.13.5e-0466.67unknown protein[more]
BLAST of CsaV3_1G015540.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015540.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVQ2|A0A0A0LVQ2_CUCSA2.0e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1[more]
tr|A0A061GIF6|A0A061GIF6_THECC5.4e-0760.94Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030414 PE=4 SV=1[more]
tr|A0A1U8IZG0|A0A1U8IZG0_GOSHI1.6e-0653.73uncharacterized protein LOC107900145 OS=Gossypium hirsutum OX=3635 GN=LOC1079001... [more]
tr|A0A1U8PRK1|A0A1U8PRK1_GOSHI1.6e-0655.22uncharacterized protein LOC107962075 OS=Gossypium hirsutum OX=3635 GN=LOC1079620... [more]
tr|A0A0D2VCB4|A0A0D2VCB4_GOSRA1.6e-0653.73Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G189400 PE=4 ... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G015540CsaV3_1G015540gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G015540.1.cds1CsaV3_1G015540.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G015540.1.exon1CsaV3_1G015540.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G015540.1CsaV3_1G015540.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 203..223
NoneNo IPR availableCOILSCoilCoilcoord: 164..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..187
NoneNo IPR availablePANTHERPTHR34947FAMILY NOT NAMEDcoord: 31..232