CsaV3_1G010160 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G010160
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L7/L12
Location	chr1 : 6312114 .. 6312758 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGGGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGA

mRNA sequence

ATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGGGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGA

Coding sequence (CDS)

ATGCGCTTAGTTTCAAGAATAAGTCATCTTCTACCCAATGTGTTTGCAAACACCATTCGCTCTTCTACAGTTGCCCTCAATCCTCTCAACAGAAATGGATTACATAGAAATTATGCTCAACCTTCTCGGATAGAGGAGGAAGAGGAGGAGGTGGAAATTGATCAGAGAAGGCTTCCAGCTGACTACGATCCTGCTAATTTTGATCCAACAGAGCATCGTAGTCCTCCAACCGATCGGGTTTTTAGGCTAGTGGATGAAATATCTGGACTCACATTAGTTGAAGTGGCTGAAATGTCTTCTATTTTGATGAAAAAATTGGGAATGACAGAGATGCCAGTTGCTGGATATATGAAACCAGGAGCTGTGGGGTTGGCTGGAATGGTGAAGAAGGGGTCATCAGCAACTGCCAAGGAGGAGAAGAAAGCAGAAAAGACTGTTTATGAGTTGAAACTAGAGTCTTACGAAGCGTCTGCAAAGATTAAAATTATCAAGGAGGTAAGAAGTCTCACTGATTTAGGTCTCAAAGAGGCAAAGGATTTAGTGGATAAAGCCCCATCGGTGTTGAAGAAGGGACTATCAAAGGAAGAGGGTGAACAAATAGTTGAAAAGATGAAAGCACTTGGTGCAAAAGTGATCTTGGAATGA

Protein sequence

MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPADYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE

Homology

[Close]

BLAST of CsaV3_1G010160 vs. NCBI nr
Match: XP_004145130.1 (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus] >KGN64464.1 hypothetical protein Csa_1G057000 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
           XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG
Sbjct: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]

BLAST of CsaV3_1G010160 vs. NCBI nr
Match: XP_008440389.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo])

HSP 1 Score: 289.7 bits (740), Expect = 8.4e-75
Identity = 198/214 (92.52%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MRLVSRISHLLPNVFANTIRSSTVALN        XX    XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHXXYAQPXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
           XXXXXXXXX EHRSPPTDRVFRLVDEISGLTLVEVAE+SSILMKKLGMTEMPVAGYMKPG
Sbjct: 61  XXXXXXXXXTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           AVGLAGMVKK SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           VDKAPSVLKKGLSKEEGEQI+EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]

BLAST of CsaV3_1G010160 vs. NCBI nr
Match: XP_022137691.1 (uncharacterized protein LOC111009067 [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 9.6e-63
Identity = 147/214 (68.69%), Postives = 154/214 (71.96%), Query Frame = 0


Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M LV RI HLLPNVFANTIRS  VALN                                 
Sbjct: 1   MHLVLRIRHLLPNVFANTIRSPAVALNPLNSNGLHRNYAQPARIEEEEDEVEIDQRRLPA 60

Query: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
                     EHRSPPTDRVFRLVDEISGLTLVEVAE+S+IL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSTILRKKLGMTDMPVVGVMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           A GL GM  K S+A AKEEKK EKTVYELKLESYEASAKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AAGLGGMAMKASTA-AKEEKKPEKTVYELKLESYEASAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQ++EKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 213

[Close]

BLAST of CsaV3_1G010160 vs. NCBI nr
Match: XP_023542773.1 (uncharacterized protein LOC111802581 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 2.9e-59
Identity = 140/214 (65.42%), Postives = 150/214 (70.09%), Query Frame = 0


Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M LV R  HLLP VF N +RS  VA N                                 
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVVAFN---LNGLRRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
                     +HRSPPTDRVFRLVDEISGLTLVEVAE+SSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           A GLAGM  K S+A +KEEKK EKTVYELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQ++EKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]

BLAST of CsaV3_1G010160 vs. NCBI nr
Match: XP_022954769.1 (uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 uncharacterized protein LOC111456924 [Cucurbita moschata])

HSP 1 Score: 237.7 bits (605), Expect = 3.8e-59
Identity = 140/214 (65.42%), Postives = 149/214 (69.63%), Query Frame = 0


Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M LV R  HLLP VF N +RS   A N                                 
Sbjct: 1   MHLVLRTRHLLPGVFTNIVRSPVAAFN---LNGLHRNYAQPARIEEEEEEVEIDQRRLPA 60

Query: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
                     +HRSPPTDRVFRLVDEISGLTLVEVAE+SSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           A GLAGM  K S+A AKEEKK EKTVYELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           V+K PSVLKKGLSKEEGEQ++EKMKALGAKVILE
Sbjct: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211

[Close]

BLAST of CsaV3_1G010160 vs. TAIR10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-45
Identity = 99/147 (67.35%), Postives = 117/147 (79.59%), Query Frame = 0


Query: 71  EHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKK 130
           EHRSPPTDRVFRLVDEIS LTL+E++E+ SI+MKK GMTE+P    MKPGA         
Sbjct: 62  EHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAXXXXXXXXX 121

Query: 131 G---SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSV 190
               S +   EE K EKTV+E+KLES+EASAKIKIIKE+RS TDLGLKEAK LV+K P++
Sbjct: 122 XXXVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAI 181

Query: 191 LKKGLSKEEGEQIVEKMKALGAKVILE 215
           LK GLSKEEGE+I+EK+KALGAKV+LE
Sbjct: 182 LKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of CsaV3_1G010160 vs. TAIR10
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-31
Identity = 72/145 (49.66%), Postives = 107/145 (73.79%), Query Frame = 0


Query: 72  HRSPPT--DRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVK 131
           + SP T  + V ++V+E+S LTL+E  +++ IL +KL ++E+PV   M PG         
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 132 KGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLK 191
           K +    KE+KK  KT +++ L++Y+A +KIK+IKEVR++T LGLKEAKDLV+KAP++LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 192 KGLSKEEGEQIVEKMKALGAKVILE 215
           KG+SKEE E+I+EK+KA+GAKV +E
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]

BLAST of CsaV3_1G010160 vs. TAIR10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-23
Identity = 62/138 (44.93%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 77  TDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATA 136
           T ++ R+ D++  L  +E+ + S +   K+G+            AV + G V  G ++ +
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRY-------GSAVAVTGSV--GDASAS 98

Query: 137 KEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEE 196
            E K AEKT +++KLE +EA++KIK+IKE+R+ TDLGLKEAK LV+KAP ++K GL+KEE
Sbjct: 99  TETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEE 158

Query: 197 GEQIVEKMKALGAKVILE 215
            E+I+EK+KA+GA V LE
Sbjct: 159 AEKIMEKLKAVGAIVALE 167

[Close]

BLAST of CsaV3_1G010160 vs. TAIR10
Match: AT2G03130.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-21
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 132 SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKG 191
           S   A E  KAEKTV+E+KLES+EA AKIKIIKEVR +  +GLKEA  LV KAP+VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 192 LSKEEGEQIVEKMKALGAKVILE 215
           LSKEEGE++VEK+ ALGA+ +L+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]

BLAST of CsaV3_1G010160 vs. TAIR10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 91.3 bits (225), Expect = 8.0e-19
Identity = 53/142 (37.32%), Postives = 86/142 (60.56%), Query Frame = 0


Query: 73  RSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGS 132
           R  P+ ++  L + I+ L+  E  ++   L + L +         K   +   G+  K  
Sbjct: 53  RPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLP--------KQQMISSDGIGAKQD 112

Query: 133 SATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGL 192
           +     E+K EKT +++KLE + AS KIK+IKEVR+ T LGLKEAK+LV+K P++LK+G+
Sbjct: 113 TGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGV 172

Query: 193 SKEEGEQIVEKMKALGAKVILE 215
           +KEE  +I+ K+KA+G   ++E
Sbjct: 173 TKEEANEIIAKIKAVGGIAVME 186

[Close]

BLAST of CsaV3_1G010160 vs. Swiss-Prot
Match: sp|P41189|RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.3e-17
Identity = 55/131 (41.98%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 83  LVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKEEKKA 142
           +V+++S LTL++ AE+S  L ++ G++       +   A         G SA A     A
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAA---------GESAAA----VA 66

Query: 143 EKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGEQIVE 202
           EKT +E+ LE ++A  KI +IKEVR++T+LGLKEAKD V+ AP  LK G+SK+E E++ +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 203 KMKALGAKVIL 214
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

[Close]

BLAST of CsaV3_1G010160 vs. Swiss-Prot
Match: sp|P53163|MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MNP1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-15
Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 75  PPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTE--MPVAGYMKPGAVGLAGMVKKG- 134
           P   ++ ++V +IS LTL+E + + + L   L + E  MP+ G+M   A   AG V    
Sbjct: 49  PVDPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMAGAAGAGAGNVPSST 108

Query: 135 --SSATAKEEKKAE-KTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVL 194
             + + A+EE K E KTV+ +KL+S++   K K+IKEV+ L  L L EAK  V+ AP VL
Sbjct: 109 GEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVL 168

Query: 195 KKGLSKEEGEQIVEKMKALGAKVILE 215
           K+ ++K++ E+I + ++ LGAKV LE
Sbjct: 169 KENVAKDDAEKIKKTLEDLGAKVSLE 194

[Close]

BLAST of CsaV3_1G010160 vs. Swiss-Prot
Match: sp|Q9L5W4|RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-14
Identity = 52/132 (39.39%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 83  LVDEISGLTLVEVAEMSSILMKKLGMT-EMPVAGYMKPGAVGLAGMVKKGSSATAKEEKK 142
           +V+++S LTL++ AE+S  L ++ G++   PVA                 + A   +   
Sbjct: 7   IVEKLSSLTLIQAAELSKRLEEEWGVSASAPVAAV---------------APAVXXDVAV 66

Query: 143 AEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGEQIV 202
           AEKT +E+ LES++A +KI +IKEVRS+TDLGLKEAK+LV+     L+ G+SK+E  ++ 
Sbjct: 67  AEKTEFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELK 123

Query: 203 EKMKALGAKVIL 214
           +K++A GA + L
Sbjct: 127 KKLEAAGATISL 123

[Close]

BLAST of CsaV3_1G010160 vs. Swiss-Prot
Match: sp|Q6FZL8|RL7_BARQU (50S ribosomal protein L7/L12 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-14
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 82  RLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKEEKK 141
           ++V+++S LTL+E AE+S +L +K G++           A  +A     G++A A E   
Sbjct: 6   KIVEDLSNLTLLEAAELSKLLEEKWGVS----------AAAPVAVATVAGAAAPAAE--- 65

Query: 142 AEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGEQIV 201
            EKT +++ L    A  KI +IKEVR+LT LGLKEAKDLV+ AP  +K+G SK+E E+I 
Sbjct: 66  -EKTEFDVILVDCGAQ-KINVIKEVRALTGLGLKEAKDLVEGAPKPIKEGASKDEAEKIK 120

Query: 202 EKMKALGAKV 212
            +++A GAKV
Sbjct: 126 SQLEAAGAKV 120

[Close]

BLAST of CsaV3_1G010160 vs. Swiss-Prot
Match: sp|A2C031|RL7_PROM1 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-14
Identity = 51/132 (38.64%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 83  LVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKKGSSATAKEEKKA 142
           ++D +  L+L+E +E+   + +  G++    AG +       AG    G  A A E    
Sbjct: 8   ILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAG----GDGADAAE---- 67

Query: 143 EKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKKGLSKEEGEQIVE 202
           EKT +E+ LES++AS+KIK++KEVR+ T LGL EAK LV+ AP  +K+G +KE+ E + +
Sbjct: 68  EKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGATKEDAEALKK 127

Query: 203 KMKALGAKVILE 215
            ++A+G KV L+
Sbjct: 128 AIEAVGGKVTLK 131

[Close]

BLAST of CsaV3_1G010160 vs. TrEMBL
Match: tr|A0A0A0LU08|A0A0A0LU08_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G057000 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.7e-76
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
           XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG
Sbjct: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]

BLAST of CsaV3_1G010160 vs. TrEMBL
Match: tr|A0A1S3B1S1|A0A1S3B1S1_CUCME (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484849 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 5.6e-75
Identity = 198/214 (92.52%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 1   MRLVSRISHLLPNVFANTIRSSTVALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MRLVSRISHLLPNVFANTIRSSTVALN        XX    XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHXXYAQPXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120
           XXXXXXXXX EHRSPPTDRVFRLVDEISGLTLVEVAE+SSILMKKLGMTEMPVAGYMKPG
Sbjct: 61  XXXXXXXXXTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180
           AVGLAGMVKK SSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 215
           VDKAPSVLKKGLSKEEGEQI+EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]

BLAST of CsaV3_1G010160 vs. TrEMBL
Match: tr|A0A1U7ZTF5|A0A1U7ZTF5_NELNU (uncharacterized protein LOC104593854 OS=Nelumbo nucifera OX=4432 GN=LOC104593854 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 118/145 (81.38%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 71  EHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG-AVGLAGMVK 130
           EHRSPPTDRVFRLVDE+SGLTLVEVAE+SSILMKKLGM E PV G MKPG A GLAGM  
Sbjct: 72  EHRSPPTDRVFRLVDEVSGLTLVEVAELSSILMKKLGMKEAPVVGVMKPGAAAGLAGMTM 131

Query: 131 KGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLK 190
           K  SA AKEEKK EKTV+ELKLESY+A++KIKIIKEVRS TDLGLKEAKDLV+K PSV+K
Sbjct: 132 KAPSA-AKEEKKLEKTVFELKLESYDAASKIKIIKEVRSFTDLGLKEAKDLVEKTPSVIK 191

Query: 191 KGLSKEEGEQIVEKMKALGAKVILE 215
           KG+SKEEGEQI+EKMKA+GAKV++E
Sbjct: 192 KGVSKEEGEQIIEKMKAVGAKVVME 215

[Close]

BLAST of CsaV3_1G010160 vs. TrEMBL
Match: tr|A0A200QNQ0|A0A200QNQ0_9MAGN (Ribosomal protein L7/L12 OS=Macleaya cordata OX=56857 GN=BVC80_1771g22 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.6e-52
Identity = 112/144 (77.78%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 71  EHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKK 130
           EHRSPP+DRVFRLVDE+S LTLVE+AE+SSILMKKLGM E PV G MKPGA GLAG+  K
Sbjct: 69  EHRSPPSDRVFRLVDEVSSLTLVEIAELSSILMKKLGMKEAPVVGVMKPGAAGLAGINMK 128

Query: 131 GSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKK 190
            S+A+AKEEKK EKTV+ELKLE++EA++KIKIIKEVRS TDLGLKEAKDLV+K PSV+K 
Sbjct: 129 ASTASAKEEKKPEKTVFELKLEAFEAASKIKIIKEVRSFTDLGLKEAKDLVEKTPSVIKT 188

Query: 191 GLSKEEGEQIVEKMKALGAKVILE 215
           G+SKEE EQI+EKMKALGAKV++E
Sbjct: 189 GVSKEEAEQIIEKMKALGAKVVME 212

[Close]

BLAST of CsaV3_1G010160 vs. TrEMBL
Match: tr|A0A2C9W5G7|A0A2C9W5G7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G074200 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.6e-52
Identity = 111/144 (77.08%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 71  EHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPGAVGLAGMVKK 130
           EHRSPPT+RVF+LVDEI+GLTLVEVAE+SSI+++K GMTE+PV G MK GA GLAGM  K
Sbjct: 73  EHRSPPTERVFKLVDEIAGLTLVEVAELSSIILRKKGMTELPVVGVMKAGAAGLAGMTMK 132

Query: 131 GSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDLVDKAPSVLKK 190
             +A AKEEKK EKTV+ELKLESYEA++KIKIIKEVRS TDLGLKEAKDLV+K PS+LK 
Sbjct: 133 APTAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKTPSILKA 192

Query: 191 GLSKEEGEQIVEKMKALGAKVILE 215
           G+SKEEGE+I+EKMKALGAKV++E
Sbjct: 193 GVSKEEGEKIIEKMKALGAKVVME 216

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145130.1	2.6e-76	100.00	PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus] >KGN64464....	[more]
XP_008440389.1	8.4e-75	92.52	PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo]	[more]
XP_022137691.1	9.6e-63	68.69	uncharacterized protein LOC111009067 [Momordica charantia]	[more]
XP_023542773.1	2.9e-59	65.42	uncharacterized protein LOC111802581 [Cucurbita pepo subsp. pepo]	[more]
XP_022954769.1	3.8e-59	65.42	uncharacterized protein LOC111456924 [Cucurbita moschata] >XP_022954770.1 unchar...	[more]

BLAST of CsaV3_1G010160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70190.1	1.3e-45	67.35	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT4G36420.1	3.1e-31	49.66	Ribosomal protein L12 family protein	[more]
AT4G37660.1	1.8e-23	44.93	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT2G03130.1	5.0e-21	66.27	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.1	8.0e-19	37.32	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

BLAST of CsaV3_1G010160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P41189\|RL7_LIBAF	9.3e-17	41.98	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]
sp\|P53163\|MNP1_YEAST	1.8e-15	39.73	54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
sp\|Q9L5W4\|RL7_LIBAC	1.9e-14	39.39	50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis OX=119494...	[more]
sp\|Q6FZL8\|RL7_BARQU	2.5e-14	43.08	50S ribosomal protein L7/L12 OS=Bartonella quintana (strain Toulouse) OX=283165 ...	[more]
sp\|A2C031\|RL7_PROM1	2.5e-14	38.64	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=16755...	[more]

BLAST of CsaV3_1G010160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LU08\|A0A0A0LU08_CUCSA	1.7e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G057000 PE=3 SV=1	[more]
tr\|A0A1S3B1S1\|A0A1S3B1S1_CUCME	5.6e-75	92.52	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103484849 PE=3 SV=1	[more]
tr\|A0A1U7ZTF5\|A0A1U7ZTF5_NELNU	2.3e-52	81.38	uncharacterized protein LOC104593854 OS=Nelumbo nucifera OX=4432 GN=LOC104593854...	[more]
tr\|A0A200QNQ0\|A0A200QNQ0_9MAGN	6.6e-52	77.78	Ribosomal protein L7/L12 OS=Macleaya cordata OX=56857 GN=BVC80_1771g22 PE=3 SV=1	[more]
tr\|A0A2C9W5G7\|A0A2C9W5G7_MANES	6.6e-52	77.08	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G074200 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR036235	Ribosomal_L7/L12_oligo_N_sf
IPR000206	Ribosomal_L7/12
IPR015608	Put_Ribosomal_L7/L12_plants
IPR014719	Ribosomal_L7/12_C/ClpS-like
IPR008932	Ribosomal_L7/L12_oligo
IPR013823	Ribosomal_L7/L12_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010160.1	CsaV3_1G010160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 60..214
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 148..213 e-value: 3.9E-21 score: 75.1
IPR013823	Ribosomal protein L7/L12, C-terminal	PRODOM	PD001326		coord: 151..213 e-value: 9.0E-21 score: 246.0
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 83..122 e-value: 1.5E-6 score: 27.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	G3DSA:3.30.1390.10		coord: 140..213 e-value: 7.7E-24 score: 85.4
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	SSF54736	ClpS-like	coord: 147..213
IPR015608	Putative ribosomal protein L7/L12, plants	PANTHER	PTHR24089:SF387	50S RIBOSOMAL PROTEIN L7/L12-RELATED	coord: 60..214
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 77..214 score: 17.152
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 79..213 e-value: 7.06529E-43 score: 141.909
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 82..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G010160	CSPI01G10090	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G010160	Cucsa.134520	Cucumber (Gy14) v1	cgycucB196
CsaV3_1G010160	CmaCh13G008480	Cucurbita maxima (Rimu)	cmacucB0235
CsaV3_1G010160	CmaCh18G002830	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G010160	CmoCh18G002480	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G010160	CmoCh13G008740	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G010160	Cp4.1LG09g09420	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G010160	Cp4.1LG20g02850	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G010160	Carg06829	Silver-seed gourd	carcucB0529
CsaV3_1G010160	Carg07640	Silver-seed gourd	carcucB1046
CsaV3_1G010160	Cla019335	Watermelon (97103) v1	cucwmB013
CsaV3_1G010160	MELO3C002405	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G010160	ClCG03G004220	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G010160	Lsi02G005450	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G010160	MELO3C002405.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G010160	Cla97C03G055380	Watermelon (97103) v2	cucwmbB030
CsaV3_1G010160	BhiUN316G60	Wax gourd	cucwgoB029

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G010160	Cucumber (Gy14) v2	cgybcucB002