CsaV3_1G010050 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G010050
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat
Location	chr1 : 6245085 .. 6246693 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAGAGAAGATCTTCTGGTAAGCCATTTGCTCTCTGTCATTCTATTAATTTTTCACCATCTCTAGACTCTAATTTTGACGATATTTAGAATATAGCGGATGATTGAGTCAAGCAATTTGTTGATCATAAGCAGACAGACCTTACAATGCATTTATAAGGATTCAGCAACTTTATCACGGGATAGTCTACTGCATGATCTATTAAAGTGCATATAAAATTGGGAAGCTTGGTATCAATTATCTGATTGGTAATATTGAATTCTTTTTACTTCTTTGTATTGTGTTGTATAGTTAATTAGCAGAGTAGTTTTGTGACATTTGCTGCCATTTCATTTCAAAAGCTAGACCACATAAAGTAATTCCACACAAAAGGATTAGCATTTAAGCTAGTTAAACTATAAGCTAAAAATAAAGGGCAAGCTTCTAAACCATGTCATTCTCCCTCAACAAAGTGTAATTTCTGCATCCTTCTTGCAACTTGAATTGATATAATTGAAAGCTTAAAGCTTAGATAGCATGTAGCTAGAAGGAGAAGAGAAAGAAGAATAACAAAAACAGATATTATGGATTGTTTATGTTTAAGTGAGCATGGATAAGACAGGTTAAAGTTGATGGATTATGATAAATTTGATAGATAAGTAGTGACATTTTCTCTTGTTCAGCTTCAACAAATTTTCAAGTTTACAATGGAGGGAAAATATTTCATAACTCATCAACTTATGCGTATAACATGATTAGCGATTCAATAGCTTTTAAATTTTAGTTACTTTTCTTATATAGCTGGGTGCTAATCTAAGAGTTCAAAATCTTGCAGTATCAGGTTCCTTTCCTGGAGAA

mRNA sequence

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG

Coding sequence (CDS)

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG

Protein sequence

MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNWID

Homology

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BLAST of CsaV3_1G010050 vs. NCBI nr
Match: XP_004154059.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >XP_011652353.1 PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >KGN64453.1 hypothetical protein Csa_1G051900 [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 2.4e-137
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELLNRIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

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BLAST of CsaV3_1G010050 vs. NCBI nr
Match: XP_023520260.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.9 bits (899), Expect = 3.7e-93
Identity = 189/258 (73.26%), Postives = 216/258 (83.72%), Query Frame = 0


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MK IRQ+LL L R PL P+L+  QIPAI +PFSSSS   S S   S A+K NTTLT DEL
Sbjct: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSS---SSSVYDSAASKINTTLTQDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           T+I+LLLPRLCL NH STAI+LL A LLTN SL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TKISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           L HH NALLYS+PI+TMLI SYCK+RK KEALK+FHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LNHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGM  DALK+L+NMIDSNLVPD DLR+WVFR LL+EAMI EA E ++ LN +GD+NT +
Sbjct: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSE 240

Query: 241 HLRRVSELLNRIITNWID 259
           HL++VSELL+ II NWI+
Sbjct: 241 HLKKVSELLDGIINNWIE 255

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BLAST of CsaV3_1G010050 vs. NCBI nr
Match: XP_022923926.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923927.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923928.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92
Identity = 189/258 (73.26%), Postives = 214/258 (82.95%), Query Frame = 0


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MK I Q+LL L RLPL P+L+  QIPAI +PFS  SS  S S   S A+K NTTLT DEL
Sbjct: 1   MKTITQRLLPLHRLPLPPQLVHDQIPAIGTPFSFFSS--SSSVYDSAASKINTTLTQDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           T+I+LLLPRLC +NH STAI+LL   LLTN SL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TKISLLLPRLCFYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHH NALLYS+PI+TMLI SY K+RK KEALK+FHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LKHHRNALLYSSPIITMLILSYSKQRKLKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGM  DALK+L+NMIDSNLVPD DLR+WVFR LL+EAMI EA E ++ LN +GD+NT D
Sbjct: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSD 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELL+ II NWI+
Sbjct: 241 HLRRVSELLDGIINNWIE 256

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BLAST of CsaV3_1G010050 vs. NCBI nr
Match: XP_023000755.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000756.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000757.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92
Identity = 188/258 (72.87%), Postives = 216/258 (83.72%), Query Frame = 0


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MK IRQ+LL L+RLPL P+L+  QIPAI +PFSSSSS  S S   S A+K NTTLT DEL
Sbjct: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSS--SSSVYDSAASKINTTLTQDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           T+I+LLLPRLCL+NH STAI+LL   LLTN SL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TKISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHH NALLYS+PI+TMLI SY K+RKSKEALK+FHWMLRPGSPCKP+E VYKTLIAGL 
Sbjct: 121 LKHHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLC 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGM  DALK+L+NMIDSNLVPD DLR+WV   LL+EAMI EA E ++ LN + D+N  D
Sbjct: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNISD 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLR+VSELL+R+I NWI+
Sbjct: 241 HLRKVSELLDRVINNWIE 256

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BLAST of CsaV3_1G010050 vs. NCBI nr
Match: XP_022137315.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Momordica charantia])

HSP 1 Score: 329.7 bits (844), Expect = 8.8e-87
Identity = 182/247 (73.68%), Postives = 205/247 (83.00%), Query Frame = 0


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MK IRQ+ L LQRL L P+ ++ QIPAI SPF SSSS ISDS SAS+A+K NTTLT DEL
Sbjct: 1   MKTIRQR-LPLQRLQLPPQFIQNQIPAIDSPFYSSSS-ISDSESASVASKTNTTLTQDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           T+INLLLPRLCLH+H STAI+LL A LLTNPSL SL LS+L+HSLASQSDF   MSLLTR
Sbjct: 61  TKINLLLPRLCLHSHHSTAITLLDAALLTNPSLQSLPLSILAHSLASQSDFTHAMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHH NA LYS+PI+TMLI SYCKRRK +EALK+FHWM RPGSPC P+E+VY TLIAGL 
Sbjct: 121 LKHHRNANLYSSPIITMLIHSYCKRRKFREALKIFHWMGRPGSPCNPDEKVYATLIAGLC 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           R GM  DALKVLRNMI SNLVPD +LRNWVFRSLL+EAMI EAMEFN+ L+ V DQN  +
Sbjct: 181 RHGMVLDALKVLRNMIGSNLVPDSNLRNWVFRSLLREAMIGEAMEFNEILDRVEDQNLSN 240

Query: 241 HLRRVSE 248
           HLR+  E
Sbjct: 241 HLRKGEE 245

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BLAST of CsaV3_1G010050 vs. TrEMBL
Match: tr|A0A0A0LRQ9|A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 1.6e-137
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELLNRIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

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BLAST of CsaV3_1G010050 vs. TrEMBL
Match: tr|M5WIJ3|M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G119000 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.5e-54
Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 0


Query: 32  FSSSSSFISDSPSASIATKPNTT--LTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS+S+S I DS +A   T    T  LT +E T+INLLLPRLCL NHL TA  L    LLT
Sbjct: 24  FSTSTSAI-DSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLT 83

Query: 92  NPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSK 151
           NP L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K K
Sbjct: 84  NPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPK 143

Query: 152 EALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNW 211
           EALK+F+W++RPGSPC  +ERV + L+ G  + GM  +ALKVLR M+ +N+VP CDL+ W
Sbjct: 144 EALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEALKVLRAMLSTNIVPGCDLKKW 203

Query: 212 VFRSLLKEAMIPEAMEFNDALNFVGDQNTIDH---LRRVSELLNRIITNWID 259
           V++ LL+EA I EA+E N+AL  VGD+   D    +++V  LL+ +I NW +
Sbjct: 204 VYKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

[Close]

BLAST of CsaV3_1G010050 vs. TrEMBL
Match: tr|A0A2N9FI41|A0A2N9FI41_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14657 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.5e-54
Identity = 132/260 (50.77%), Postives = 170/260 (65.38%), Query Frame = 0


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKP--NTTLTHD 60
           MK ++ +   L  LP  P +     P+I +PFSSS+         S+ + P  N TLT  
Sbjct: 3   MKSLKLKHRQLLSLPSKPIISLLFQPSI-APFSSST-------ETSLPSNPTTNATLTQQ 62

Query: 61  ELTRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLL 120
           E T INLLLPRLCL +HLSTAI+L    LLTNP   SLSLS+L HSL SQ D AL+MSLL
Sbjct: 63  EFTNINLLLPRLCLSDHLSTAINLTTTALLTNPPPKSLSLSILIHSLTSQPDMALSMSLL 122

Query: 121 TRLKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAG 180
           TRLKH+P +  + TPI TMLI+SY K+ K KEA K+F+WM+RPGSPC  + +V   L+ G
Sbjct: 123 TRLKHNPISQTHLTPITTMLIASYFKQLKPKEAFKVFNWMVRPGSPCVLDVKVCGILVNG 182

Query: 181 LYRKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNT 240
             R GM  +ALKVLR M+  NLVP+ +   WV+R LL+EA I EAME N+AL  V D   
Sbjct: 183 FCRIGMVLEALKVLREMVGVNLVPEREFAKWVYRGLLREARIKEAMELNEALGLVWDVGG 242

Query: 241 IDHLRRVSELLNRIITNWID 259
            + +++V  LL+ +I NWI+
Sbjct: 243 DEAMKKVLGLLDCMIGNWIE 254

[Close]

BLAST of CsaV3_1G010050 vs. TrEMBL
Match: tr|A0A2P6Q7I4|A0A2P6Q7I4_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0021391 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 119/231 (51.52%), Postives = 151/231 (65.37%), Query Frame = 0


Query: 31  PFSSSSSFISDSPSASIATKPNTTLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLTN 90
           PFSSSS+ I    S             ++LT INLLLPRLCL  HL T+  L    LLTN
Sbjct: 25  PFSSSST-IDSITSTXXXXXXXXXXXQEDLTNINLLLPRLCLSGHLDTSTHLTITALLTN 84

Query: 91  PSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSKE 150
           P LHSLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TMLI+SY KR++ +E
Sbjct: 85  PPLHSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHSYLTPITTMLIASYFKRKRPRE 144

Query: 151 ALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNWV 210
           ALKLF+WM+RPGSP   +ERV   L+ G  R GM  +AL VLR M+ +++VP C+LR WV
Sbjct: 145 ALKLFNWMVRPGSPVVLDERVCGVLVGGFCRNGMVLEALNVLRAMLGASIVPGCNLRKWV 204

Query: 211 FRSLLKEAMIPEAMEFNDALNFVGDQN---TIDHLRRVSELLNRIITNWID 259
           +R LL+EA I EA+E N+AL+ VGD       +  R+V  LL+ +I  W +
Sbjct: 205 YRGLLREARIREALELNEALDCVGDSEKGCVSEGFRKVLALLDHMIDKWTE 254

[Close]

BLAST of CsaV3_1G010050 vs. TrEMBL
Match: tr|A0A1Q3C446|A0A1Q3C446_CEPFO (PPR domain-containing protein/PPR_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18526 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51
Identity = 117/226 (51.77%), Postives = 155/226 (68.58%), Query Frame = 0


Query: 31  PFSSSSSFISDSPSASIATKPNTTLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLTN 90
           P SSSSS         + T  N  LT  ELT+INLL+PRLCL NHL+TAI+L+   LLTN
Sbjct: 30  PSSSSSSEAPTCLKPKLTTTSNLKLTQQELTKINLLIPRLCLFNHLTTAINLITTALLTN 89

Query: 91  PSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSKE 150
           P   SLSLS+L+HSLASQ D  L MSLLTRLKH P A  + T I TMLI+S+ ++ + K+
Sbjct: 90  PPPKSLSLSILTHSLASQPDLTLPMSLLTRLKHIPQAHPHLTHITTMLITSFLRQGRPKD 149

Query: 151 ALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNWV 210
           ALK++HWM+RPGS C+ E  VY  L+ G   KG+  +AL+VLR+M+   L+P   LR  V
Sbjct: 150 ALKVYHWMIRPGSSCEVEPVVYGILVHGFCGKGLVLEALRVLRDMVGIRLMPGVGLRKTV 209

Query: 211 FRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNW 257
           FRSLL+EA + EA+EF++AL  VG     + +++V +LL+ +I NW
Sbjct: 210 FRSLLREARVKEAVEFDEALKCVGKGCEGEVVKKVVDLLDHMIANW 255

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154059.1	2.4e-137	100.00	PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum...	[more]
XP_023520260.1	3.7e-93	73.26	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur...	[more]
XP_022923926.1	3.1e-92	73.26	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur...	[more]
XP_023000755.1	3.1e-92	72.87	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur...	[more]
XP_022137315.1	8.8e-87	73.68	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Momor...	[more]

BLAST of CsaV3_1G010050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRQ9\|A0A0A0LRQ9_CUCSA	1.6e-137	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1	[more]
tr\|M5WIJ3\|M5WIJ3_PRUPE	8.5e-54	53.45	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G119000 PE=4 SV=1	[more]
tr\|A0A2N9FI41\|A0A2N9FI41_FAGSY	8.5e-54	50.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14657 PE=4 SV=1	[more]
tr\|A0A2P6Q7I4\|A0A2P6Q7I4_ROSCH	1.4e-51	51.52	Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0021391 P...	[more]
tr\|A0A1Q3C446\|A0A1Q3C446_CEPFO	1.8e-51	51.77	PPR domain-containing protein/PPR_1 domain-containing protein OS=Cephalotus foll...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010050.1	CsaV3_1G010050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 136..156 e-value: 8.2E-4 score: 19.4 coord: 171..199 e-value: 0.0011 score: 19.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 136..156 e-value: 6.6E-4 score: 17.7 coord: 171..204 e-value: 5.5E-6 score: 24.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 168..202 score: 9.657
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 131..165 score: 9.043
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 61..239 e-value: 2.3E-19 score: 71.4
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 62..234
None	No IPR available	PANTHER	PTHR44149:SF3	SUBFAMILY NOT NAMED	coord: 62..234

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G010050	CSPI01G09980	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G010050	CmaCh13G008370	Cucurbita maxima (Rimu)	cmacucB0235
CsaV3_1G010050	CmoCh13G008660	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G010050	Cp4.1LG20g02840	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G010050	Carg07629	Silver-seed gourd	carcucB1046
CsaV3_1G010050	Cla002654	Watermelon (97103) v1	cucwmB013
CsaV3_1G010050	MELO3C002395	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G010050	ClCG03G004120	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G010050	Lsi02G005350	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G010050	Cla97C03G055280	Watermelon (97103) v2	cucwmbB030
CsaV3_1G010050	BhiUN316G33	Wax gourd	cucwgoB029

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G010050	Silver-seed gourd	carcucB0529
CsaV3_1G010050	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G010050	Cucumber (Gy14) v1	cgycucB196
CsaV3_1G010050	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G010050	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G010050	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G010050	Melon (DHL92) v3.6.1	cucmedB022