CsaV3_1G009300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G009300
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description30S ribosomal protein S21
Locationchr1 : 5789324 .. 5791050 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGGCCACCGCTCCGAAGAGGAAGTGCAAGACGGACCACCGGTGAGTCGCCATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGGTTAGTTGATCTCATTTCTAAATCAAAATCAGATGAGTTGTTCATGGCTGAATTTGGTTTCTGTGAGATTTTGTTGTTTTTGAATGGTCTGCTTTCTTTCATTTTCTTTGCAACCAAATAGTGTATTTCGATATCAACTTCTTAACTGTCTCCCTCTGTCAAATGCTGAATACAAATCTTGTGGTTCATTGATCCACGACCACCACTATTGTTCTTCTTGATTTCATTTTCCCCTCTTCCTTTTTAAATCTTCCTTAACATTTTCTAGAACTCAGAAGCCAGCTTCAGATTGATCAATATCAATTAACATTTTCTAGAACTCAGAAGCCAGCTTCAGATTGATCAATATCAATTCAAAGAATTAGTCTACTCAAAATTTCTTCCATTTTAGTGGGAGAGAGGGAAACAGGGGATAGTGAAGATTGTTCAATTGCAGGTTGAAGCTTGAGTAAAAGTTATCATAAAAAAGGGAAACTAGAGGTTGAAAATATCTGAAATTAGCTGTGAAGAAACAGCTATAACTGAAAGATGCTGCTTAGTTACAATACAAGGTGACCCATGATTAGCATTGAGGTTATTGGTAAAGAAGGTCACTTCTTGCGGGTTGTGTTGCTTGCTGCAAACATCCCAAATTGTTGTGACTTGATTGAATCTGTCTCAACTCTCCTTGGGTTCTGTGTTTTAAAAAAAATGAAGAATGGGAAAAATGTAGATTATCATTCAGCTCATTCTCATTGTAGATTCAGATTTTTGTGTTTCCATGTTTTAATGCAAGCAATGGTTTAAAGTATATGTGATTCTCCAACTGCAGAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAAAGGTCACTCTGCCTTGAAAGAACGAAACCAATATTCGTAATGGATGAGAAGAATTATTAGATGATTAGTGTATTTTACTTAATATTATTTAGTTTAGTTGGTAATTTAGAATTAATTAGTTAATTGTCAAAGCTATAAATAGCTACTTTAGGTTGTAATATGAAGCTTTCTAAACACCATTTGGAAAATAGAATTGTTCTTAGAGAACTCTCTTTGAAATGAACTTCTTTTGTTTGGCTATGGACTTGGCATAATATCTCTACCTGTTGTATTAGCAATACGTTGAAGTTAATGGCAATGAAGATTTATTCTGCCTCAATCAAATGGATGTTTTTCAATAGTCTCTCCTCTAGTTTG

mRNA sequence

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

Coding sequence (CDS)

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

Protein sequence

MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
Homology
[Close]
BLAST of CsaV3_1G009300 vs. NCBI nr
Match: XP_004152510.2 (PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus] >KGN64376.1 hypothetical protein Csa_1G050150 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 9.5e-74
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX 120
           VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX 120

Query: 121 XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 169
           XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
Sbjct: 121 XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 168

[Close]
BLAST of CsaV3_1G009300 vs. NCBI nr
Match: XP_008439325.1 (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 structural constituent of ribosome [Cucumis melo subsp. melo])

HSP 1 Score: 197.2 bits (500), Expect = 4.5e-47
Identity = 130/167 (77.84%), Postives = 131/167 (78.44%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX 120
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFEN     XXXXXXX
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS 168
           XXXXXXXXX                         DNWDFYQVDLPYS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNWDFYQVDLPYS 167

[Close]
BLAST of CsaV3_1G009300 vs. NCBI nr
Match: XP_022954830.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 8.2e-33
Identity = 105/165 (63.64%), Postives = 120/165 (72.73%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFA--SRGNVASSSQEPKGV 63
           AAT+S+T FFSFLSISK S  H  SVS+N QS     L RL A  +R +V SSS E    
Sbjct: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSP 62

Query: 64  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXX 123
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXX
Sbjct: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXX 122

Query: 124 XXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
           XXXXXXXX        EQ  Q+    K+ DE DDNW+FYQVDLPY
Sbjct: 123 XXXXXXXXXXXXXXXEEQQKQEITRRKDMDEGDDNWEFYQVDLPY 167

[Close]
BLAST of CsaV3_1G009300 vs. NCBI nr
Match: XP_023542788.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-27
Identity = 96/165 (58.18%), Postives = 109/165 (66.06%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSL--PNSKLTRLFASRGNVASSSQEPKGV 63
           AAT+S+T FFSFLSISK S  H  SVS+N QSL  P                        
Sbjct: 3   AATTSLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXX 123
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKR XXXXXXX
Sbjct: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKXXXXXXX 122

Query: 124 XXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
           XXXXXXXX         Q  Q+T   K+ DE DDNW+FYQVDLPY
Sbjct: 123 XXXXXXXXXXXXXXXXXQLKQETTRRKDMDEGDDNWEFYQVDLPY 167

[Close]
BLAST of CsaV3_1G009300 vs. NCBI nr
Match: XP_022994169.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 93/165 (56.36%), Postives = 105/165 (63.64%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVP- 63
           AAT+S+T FFSFLSISK S  H  SVS+N QSL  +K                       
Sbjct: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  -LRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXX 123
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXX
Sbjct: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXX 122

Query: 124 XXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
           XXXXXXXX                      EE+DNWDFYQVDLPY
Sbjct: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEDNWDFYQVDLPY 167

[Close]
BLAST of CsaV3_1G009300 vs. TAIR10
Match: AT3G27160.1 (Ribosomal protein S21 family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-07
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKS-----------------SQIHHNSVSINLQSL--PNSKLTRL 63
           AA+ S+T+F SF+S  KS                 SQ   N ++I   ++   +S  + L
Sbjct: 2   AASFSLTSFISFISPFKSQTKPTPPPNLTLPSPTISQRRRNDLAIESMAVEETSSTASSL 61

Query: 64  FASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECK 102
            +   +V   S            YN+ + V +NESE+++VNRFRR+V+R G++QECK
Sbjct: 62  SSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECK 118

[Close]
BLAST of CsaV3_1G009300 vs. Swiss-Prot
Match: sp|P82024|RR21_SPIOL (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 6.4e-05
Identity = 37/116 (31.90%), Postives = 59/116 (50.86%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKSS---------------QIHHNSVSINLQSLPNSKLTRLFASR 63
           A+TSS+ NF S L  S +S                   NS+SI+ +   N+ + +     
Sbjct: 2   ASTSSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLSSQQNSISISSKKHENAAIAKKEEYP 61

Query: 64  GN---VASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECK 102
           G+   V   S            YN+ + V +NE+E++++NRFRR+V+RAG++QECK
Sbjct: 62  GDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECK 117

[Close]
BLAST of CsaV3_1G009300 vs. Swiss-Prot
Match: sp|Q8RB59|RS21_CALS4 (30S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsU PE=3 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 9.3e-04
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 0 

Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKR 114
           + VGENES D  + RFRRQ  +AG+L E ++R  +E+   KR
Sbjct: 4   VRVGENESLDSALRRFRRQCSKAGVLSELRKREHYESPSVKR 45

[Close]
BLAST of CsaV3_1G009300 vs. Swiss-Prot
Match: sp|B0KA63|RS21_THEP3 (30S ribosomal protein S21 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.3e-04
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 0 

Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKR 114
           + VGENES D  + RFRRQ  +AG+L E ++R  +E+   KR
Sbjct: 4   VRVGENESLDNALRRFRRQCSKAGVLSEVRKREHYESPSVKR 45

[Close]
BLAST of CsaV3_1G009300 vs. Swiss-Prot
Match: sp|B0K6Z9|RS21_THEPX (30S ribosomal protein S21 OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.3e-04
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 0 

Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKR 114
           + VGENES D  + RFRRQ  +AG+L E ++R  +E+   KR
Sbjct: 4   VRVGENESLDNALRRFRRQCSKAGVLSEVRKREHYESPSVKR 45

[Close]
BLAST of CsaV3_1G009300 vs. TrEMBL
Match: tr|A0A0A0LWJ6|A0A0A0LWJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 6.3e-74
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX 120
           VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX 120

Query: 121 XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 169
           XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
Sbjct: 121 XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 168

[Close]
BLAST of CsaV3_1G009300 vs. TrEMBL
Match: tr|A0A1S3AZ70|A0A1S3AZ70_CUCME (uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.0e-47
Identity = 130/167 (77.84%), Postives = 131/167 (78.44%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX 120
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFEN     XXXXXXX
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS 168
           XXXXXXXXX                         DNWDFYQVDLPYS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNWDFYQVDLPYS 167

[Close]
BLAST of CsaV3_1G009300 vs. TrEMBL
Match: tr|E5GBW8|E5GBW8_CUCME (Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.0e-47
Identity = 130/167 (77.84%), Postives = 131/167 (78.44%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXX 120
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFEN     XXXXXXX
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS 168
           XXXXXXXXX                         DNWDFYQVDLPYS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNWDFYQVDLPYS 167

[Close]
BLAST of CsaV3_1G009300 vs. TrEMBL
Match: tr|A0A2P4IVT9|A0A2P4IVT9_QUESU (Telomere length regulation protein tel2 like OS=Quercus suber OX=58331 GN=CFP56_18638 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.3e-14
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 0 

Query: 71   LITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXXXXXXXXXXR 130
            ++ VGENE ED++V RFRR+VLRAG++QECKRRR+FEN+  K+                R
Sbjct: 935  IVIVGENEPEDKLVGRFRREVLRAGVIQECKRRRYFENTHDKK-----KRKARDAARRNR 994

Query: 131  RPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
            + + +   Q  Q+ P+ KN D +DDNWD Y+VDLPY
Sbjct: 995  KWRPLPKVQAKQEAPKKKNGD-KDDNWDDYEVDLPY 1024

[Close]
BLAST of CsaV3_1G009300 vs. TrEMBL
Match: tr|M5WEV9|M5WEV9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019736mg PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.1e-13
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 0 

Query: 68  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXXXXXXXX 127
           YN+ I V +N+SE+++V RFR++VLRAG+LQECK RRFFEN   KR    XXXXXXXXXX
Sbjct: 65  YNVQIVVQDNDSEEKLVGRFRKEVLRAGVLQECKTRRFFEN---KREKKQXXXXXXXXXX 124

Query: 128 XXRRPQSITGEQPDQKTPESK-NRDEEDDNWDFYQVDLPY 167
           X R PQS   + P Q  PE++ N D+EDDNWD Y V+LPY
Sbjct: 125 XKRYPQS---KDPRQDKPEARINDDKEDDNWD-YDVELPY 157

The following BLAST results are available for this feature:
BLAST of CsaV3_1G009300 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152510.29.5e-74100.00PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus] >KGN64376.1 hy... [more]
XP_008439325.14.5e-4777.84PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 struc... [more]
XP_022954830.18.2e-3363.6430S ribosomal protein S21, chloroplastic-like [Cucurbita moschata][more]
XP_023542788.13.9e-2758.1830S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022994169.11.4e-2456.3630S ribosomal protein S21, chloroplastic-like [Cucurbita maxima][more]
BLAST of CsaV3_1G009300 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27160.13.2e-0732.48Ribosomal protein S21 family protein[more]
BLAST of CsaV3_1G009300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P82024|RR21_SPIOL6.4e-0531.9030S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P... [more]
sp|Q8RB59|RS21_CALS49.3e-0447.6230S ribosomal protein S21 OS=Caldanaerobacter subterraneus subsp. tengcongensis ... [more]
sp|B0KA63|RS21_THEP39.3e-0447.6230S ribosomal protein S21 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33... [more]
sp|B0K6Z9|RS21_THEPX9.3e-0447.6230S ribosomal protein S21 OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=r... [more]
BLAST of CsaV3_1G009300 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWJ6|A0A0A0LWJ6_CUCSA6.3e-74100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1[more]
tr|A0A1S3AZ70|A0A1S3AZ70_CUCME3.0e-4777.84uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=... [more]
tr|E5GBW8|E5GBW8_CUCME3.0e-4777.84Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV... [more]
tr|A0A2P4IVT9|A0A2P4IVT9_QUESU7.3e-1447.92Telomere length regulation protein tel2 like OS=Quercus suber OX=58331 GN=CFP56_... [more]
tr|M5WEV9|M5WEV9_PRUPE8.1e-1361.00Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019736m... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR038380S21_sf
IPR001911Ribosomal_S21
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G009300.1CsaV3_1G009300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 73..81
score: 47.22
coord: 81..90
score: 35.0
coord: 93..103
score: 44.7
coord: 105..115
score: 42.42
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 72..125
e-value: 3.3E-16
score: 58.6
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 72..127
e-value: 6.4E-15
score: 52.7
IPR001911Ribosomal protein S21PANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 67..166
IPR001911Ribosomal protein S21PRODOMPD005521coord: 86..110
e-value: 5.0E-4
score: 100.0
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 69..125
score: 14.633
IPR038380Ribosomal protein S21 superfamilyGENE3DG3DSA:1.20.5.1150coord: 84..122
e-value: 3.2E-8
score: 34.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..168
NoneNo IPR availablePANTHERPTHR21109:SF6PLASTID RIBOSOMAL PROTEIN S21coord: 67..166

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G009300CSPI01G09200Wild cucumber (PI 183967)cpicucB001
CsaV3_1G009300Cucsa.391760Cucumber (Gy14) v1cgycucB592
CsaV3_1G009300CmaCh18G002140Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G009300CmoCh18G001900Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G009300Cp4.1LG09g09840Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G009300CsGy1G009220Cucumber (Gy14) v2cgybcucB002
CsaV3_1G009300Carg06774Silver-seed gourdcarcucB0529
CsaV3_1G009300Cla002589Watermelon (97103) v1cucwmB013
CsaV3_1G009300MELO3C002333Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G009300ClCG03G003500Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G009300Lsi02G004730Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G009300MELO3C002333.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G009300Cla97C03G054570Watermelon (97103) v2cucwmbB030
CsaV3_1G009300Bhi08G001383Wax gourdcucwgoB033
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G009300Cucumber (Chinese Long) v3cuccucB010
CsaV3_1G009300Silver-seed gourdcarcucB0397
CsaV3_1G009300Silver-seed gourdcarcucB1046
CsaV3_1G009300Cucumber (Gy14) v1cgycucB237
CsaV3_1G009300Cucumber (Gy14) v1cgycucB595
CsaV3_1G009300Cucurbita maxima (Rimu)cmacucB0078
CsaV3_1G009300Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G009300Cucurbita moschata (Rifu)cmocucB0066
CsaV3_1G009300Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G009300Cucurbita pepo (Zucchini)cpecucB0439
CsaV3_1G009300Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G009300Wild cucumber (PI 183967)cpicucB074
CsaV3_1G009300Bottle gourd (USVL1VR-Ls)cuclsiB096
CsaV3_1G009300Melon (DHL92) v3.5.1cucmeB066
CsaV3_1G009300Melon (DHL92) v3.6.1cucmedB062
CsaV3_1G009300Watermelon (Charleston Gray)cucwcgB080
CsaV3_1G009300Watermelon (Charleston Gray)cucwcgB102
CsaV3_1G009300Watermelon (97103) v2cucwmbB056
CsaV3_1G009300Watermelon (97103) v2cucwmbB071
CsaV3_1G009300Wax gourdcucwgoB073