CSPI01G09200 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G09200
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description30S ribosomal protein S21
LocationChr1 : 5785600 .. 5787165 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCGCTCCGAAGAGGAAGTGCAAGACGGACCACCGGTGAGTCGCCATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGGTTAGTTGATCTCATTTCTAAATCAAAATCAGATGAGTTGTTCATGGCTGAATTTGGTTTCTGTGAGATTTTGTTGTTTTTGAATGGTCTGCTTTCTTTCATTTTCTTTGCAACCAAATAGTGTATTTCGATATCAACTTCTTAACTGTCTCCCTCTGTCAAATGCTGAATACAAATCTTGTGGTTCATTGATCCACGACCACCACTATTGTTCTTCTTCATTTCATTTTCCCCTCTTCCTTTTTAAATCTTCCTTAACATTTTCTAGAACTCAGAAGCCAGCTTCAGATTGATCAATATCAATTCAAAGAATTAGTCTACTCAAAATTTCTTCCATTTTAGTGGGAGAGAGGGAAACAGGGGATAGTGAAGATTGTTCAATTACAGGTTGAAGCTTGAGTAAAAGTTATCATAAAAAAGGGAAACTAGAGTTTGAAAATATCTGAAATTAGCTGTGAAGAAACAGCTATAACTGAAAGATGCTGCTTAGTTACAATACAAGGTGACCCATGATTAGCATTGAGGTTATTGGTAAAGAAGGTCACTTCTTGCGGGTTGTGTTGCTTGCTGCAAACATCCCAAATTGTTTTGTTCAATTACGGGTTGTGTTGATTGAATCTGTCTCAACTCTCCTTGGGTTCTGTGTTTTAAAAAAAATGAAGAATGGGAAAAATGTAGATTATCATTCAGCTCATTCTCATTGTAGATTCAGATTTTTGTGTTTCCATGTTTTAATGCAAGCAATGGTTTAAAGTATATGTGATTCTCCAACTGCAGAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAAAGGTCACTCTGCCTTGAAAGAACGAAACCAATATTCGTAATGGATGAGAAGAATTATTAGATGATTAGTGTATTTTACTTTATATTATTTAGTTTAGTTGGTAATTTAGAATTAATTAGTTAATTGTCAAAGCTATAAATAGCTACTTTAGGTTGTAATATGAAGCTTTCTAAACACCATTTGGAAAATAGAATTGTTCTTAGAGAACTCTCTTTGAAATTAACTTCTTTTGTTT

mRNA sequence

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

Coding sequence (CDS)

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA
Homology
[Close]
BLAST of CSPI01G09200 vs. TrEMBL
Match: A0A0A0LWJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.4e-82
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 169
           AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
Sbjct: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 168

[Close]
BLAST of CSPI01G09200 vs. TrEMBL
Match: E5GBW8_CUCME (Structural constituent of ribosome OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-74
Identity = 155/167 (92.81%), Postives = 159/167 (95.21%), Query Frame = 1 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS 168
           AKRNRKRRFRRPQS T +QPD+KTPESKN+DEEDDNWDFYQVDLPYS
Sbjct: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYS 167

[Close]
BLAST of CSPI01G09200 vs. TrEMBL
Match: A0A068V7U8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019153001 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-20
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 68  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YN+ + V ENE E++++NRFRR+V+RAG++QECKRRRFFEN Q ++KRK+REAAKRNR+ 
Sbjct: 92  YNVQVLVDENEPEEKLLNRFRREVMRAGVIQECKRRRFFENKQDEKKRKSREAAKRNRR- 151

Query: 128 RFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
             RRPQS    Q  Q+T ++   DE++DNW+    DLPY
Sbjct: 152 --RRPQSRGSFQDRQETSKNSKEDEDEDNWELPDGDLPY 187

[Close]
BLAST of CSPI01G09200 vs. TrEMBL
Match: W9RJT4_9ROSA (30S ribosomal protein S21 OS=Morus notabilis GN=L484_002683 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-19
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 68  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YN+ +   ENE E++++NRFR++V +AG+L+EC+RRRFFENSQ KRKRK+REAA+RNRK 
Sbjct: 73  YNVQVIAEENEPEERLLNRFRKEVFKAGVLRECRRRRFFENSQDKRKRKSREAARRNRK- 132

Query: 128 RFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
             R PQ     +  Q+T  +KN DE+DDNWD + VDLPY
Sbjct: 133 --RPPQPKAPTKAKQETINTKN-DEKDDNWDHFDVDLPY 167

[Close]
BLAST of CSPI01G09200 vs. TrEMBL
Match: B9RBJ4_RICCO (Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_1677380 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 77/177 (43.50%), Postives = 107/177 (60.45%), Query Frame = 1 

Query: 4   AATSSITNFFSFLSISK-----SSQIHHNS-VSINLQSLPNSKLTRLFA----SRGNVAS 63
           A +  +TNF SFL  +      +SQ+  +S ++ +L     SKL  L A    S     S
Sbjct: 2   ATSLPLTNFLSFLLPTNPPPRPTSQLSFSSPLTRSLPQNSKSKLIPLAAHDSGSLSTELS 61

Query: 64  SSQEPKGVPLRIL----NYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENS 123
           S+  P      IL     YN+ + V +NE E++++NRFRR+V+RAG++QECKRRRFFEN 
Sbjct: 62  SAINPSLANANILFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENK 121

Query: 124 QAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
           Q ++KRK REAAKRN+K   RRPQS    Q  Q+T  +K  D++ DNW+  + DLPY
Sbjct: 122 QDEKKRKTREAAKRNKK---RRPQSRFTTQNKQETSTTKKDDDDGDNWELPEGDLPY 175

[Close]
BLAST of CSPI01G09200 vs. TAIR10
Match: AT3G27160.1 (AT3G27160.1 Ribosomal protein S21 family protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-19
Identity = 66/181 (36.46%), Postives = 101/181 (55.80%), Query Frame = 1 

Query: 4   AATSSITNFFSFLSISKS-----------------SQIHHNSVSINLQSLPNSKLTR--L 63
           AA+ S+T+F SF+S  KS                 SQ   N ++I   ++  +  T   L
Sbjct: 2   AASFSLTSFISFISPFKSQTKPTPPPNLTLPSPTISQRRRNDLAIESMAVEETSSTASSL 61

Query: 64  FASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRR 123
            +   +V   S            YN+ + V +NESE+++VNRFRR+V+R G++QECKRRR
Sbjct: 62  SSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRR 121

Query: 124 FFENSQAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDL 166
           +FEN Q ++KR+ R+AAKRN+KRR +   +    +      +SK +DEE+DNW+    D+
Sbjct: 122 YFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMPGGDV 181

[Close]
BLAST of CSPI01G09200 vs. TAIR10
Match: AT5G63300.2 (AT5G63300.2 Ribosomal protein S21 family protein)

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-10
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 

Query: 68  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YN+ +   + ESE+Q+VN F+R   RAG+LQE +RRRFFE+S  K+ RK +EAAK+ RKR
Sbjct: 80  YNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFFESSLEKKTRKTKEAAKKYRKR 139

[Close]
BLAST of CSPI01G09200 vs. NCBI nr
Match: gi|778658012|ref|XP_004152510.2| (PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 4.9e-82
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 169
           AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
Sbjct: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP 168

[Close]
BLAST of CSPI01G09200 vs. NCBI nr
Match: gi|659067413|ref|XP_008439325.1| (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.8e-74
Identity = 155/167 (92.81%), Postives = 159/167 (95.21%), Query Frame = 1 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFENSQAKRKRKAREA
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREA 120

Query: 121 AKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYS 168
           AKRNRKRRFRRPQS T +QPD+KTPESKN+DEEDDNWDFYQVDLPYS
Sbjct: 121 AKRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYS 167

[Close]
BLAST of CSPI01G09200 vs. NCBI nr
Match: gi|661879613|emb|CDP16686.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 105.9 bits (263), Expect = 7.0e-20
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 68  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YN+ + V ENE E++++NRFRR+V+RAG++QECKRRRFFEN Q ++KRK+REAAKRNR+ 
Sbjct: 92  YNVQVLVDENEPEEKLLNRFRREVMRAGVIQECKRRRFFENKQDEKKRKSREAAKRNRR- 151

Query: 128 RFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
             RRPQS    Q  Q+T ++   DE++DNW+    DLPY
Sbjct: 152 --RRPQSRGSFQDRQETSKNSKEDEDEDNWELPDGDLPY 187

[Close]
BLAST of CSPI01G09200 vs. NCBI nr
Match: gi|703123720|ref|XP_010102885.1| (30S ribosomal protein S21 [Morus notabilis])

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 68  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YN+ +   ENE E++++NRFR++V +AG+L+EC+RRRFFENSQ KRKRK+REAA+RNRK 
Sbjct: 73  YNVQVIAEENEPEERLLNRFRKEVFKAGVLRECRRRRFFENSQDKRKRKSREAARRNRK- 132

Query: 128 RFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
             R PQ     +  Q+T  +KN DE+DDNWD + VDLPY
Sbjct: 133 --RPPQPKAPTKAKQETINTKN-DEKDDNWDHFDVDLPY 167

[Close]
BLAST of CSPI01G09200 vs. NCBI nr
Match: gi|255536923|ref|XP_002509528.1| (PREDICTED: uncharacterized protein LOC8271463 [Ricinus communis])

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-19
Identity = 77/177 (43.50%), Postives = 107/177 (60.45%), Query Frame = 1 

Query: 4   AATSSITNFFSFLSISK-----SSQIHHNS-VSINLQSLPNSKLTRLFA----SRGNVAS 63
           A +  +TNF SFL  +      +SQ+  +S ++ +L     SKL  L A    S     S
Sbjct: 2   ATSLPLTNFLSFLLPTNPPPRPTSQLSFSSPLTRSLPQNSKSKLIPLAAHDSGSLSTELS 61

Query: 64  SSQEPKGVPLRIL----NYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENS 123
           S+  P      IL     YN+ + V +NE E++++NRFRR+V+RAG++QECKRRRFFEN 
Sbjct: 62  SAINPSLANANILFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENK 121

Query: 124 QAKRKRKAREAAKRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 167
           Q ++KRK REAAKRN+K   RRPQS    Q  Q+T  +K  D++ DNW+  + DLPY
Sbjct: 122 QDEKKRKTREAAKRNKK---RRPQSRFTTQNKQETSTTKKDDDDGDNWELPEGDLPY 175

The following BLAST results are available for this feature:
BLAST of CSPI01G09200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G09200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWJ6_CUCSA3.4e-82100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050150 PE=3 SV=1[more]
E5GBW8_CUCME2.6e-7492.81Structural constituent of ribosome OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A0A068V7U8_COFCA4.8e-2056.57Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019153001 PE=3 SV=1[more]
W9RJT4_9ROSA1.8e-1957.5830S ribosomal protein S21 OS=Morus notabilis GN=L484_002683 PE=3 SV=1[more]
B9RBJ4_RICCO2.4e-1943.50Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_1677380... [more]
BLAST of CSPI01G09200 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27160.12.8e-1936.46 Ribosomal protein S21 family protein[more]
AT5G63300.23.1e-1055.00 Ribosomal protein S21 family protein[more]
BLAST of CSPI01G09200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778658012|ref|XP_004152510.2|4.9e-82100.00PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus][more]
gi|659067413|ref|XP_008439325.1|3.8e-7492.81PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo][more]
gi|661879613|emb|CDP16686.1|7.0e-2056.57unnamed protein product [Coffea canephora][more]
gi|703123720|ref|XP_010102885.1|2.6e-1957.5830S ribosomal protein S21 [Morus notabilis][more]
gi|255536923|ref|XP_002509528.1|3.5e-1943.50PREDICTED: uncharacterized protein LOC8271463 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_S21
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G09200.1CSPI01G09200.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRODOMPD005521coord: 86..110
score: 5.
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 73..81
score: 1.3E-7coord: 81..90
score: 1.3E-7coord: 93..103
score: 1.3E-7coord: 105..115
score: 1.
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 69..125
score: 14
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 72..125
score: 2.2
IPR001911Ribosomal protein S21TIGRFAMsTIGR00030TIGR00030coord: 72..127
score: 6.4
NoneNo IPR availablePANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 4..158
score: 1.2
NoneNo IPR availablePANTHERPTHR21109:SF028S RIBOSOMAL PROTEIN S21, MITOCHONDRIALcoord: 4..158
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G09200Cla002589Watermelon (97103) v1cpiwmB010
CSPI01G09200Csa1G050150Cucumber (Chinese Long) v2cpicuB000
CSPI01G09200MELO3C002333Melon (DHL92) v3.5.1cpimeB024
CSPI01G09200ClCG03G003500Watermelon (Charleston Gray)cpiwcgB038
CSPI01G09200Lsi02G004730Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G09200MELO3C002333.2Melon (DHL92) v3.6.1cpimedB023
CSPI01G09200CsaV3_1G009300Cucumber (Chinese Long) v3cpicucB001
CSPI01G09200Cla97C03G054570Watermelon (97103) v2cpiwmbB032
CSPI01G09200Bhi08G001383Wax gourdcpiwgoB030
CSPI01G09200Cucsa.391760Cucumber (Gy14) v1cgycpiB576
CSPI01G09200CmaCh18G002140Cucurbita maxima (Rimu)cmacpiB394
CSPI01G09200CmoCh18G001900Cucurbita moschata (Rifu)cmocpiB383
CSPI01G09200Cp4.1LG09g09840Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G09200CsGy1G009220Cucumber (Gy14) v2cgybcpiB001
CSPI01G09200Carg06774Silver-seed gourdcarcpiB0531
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G09200Watermelon (97103) v2cpiwmbB072
CSPI01G09200Wax gourdcpiwgoB069
CSPI01G09200Wild cucumber (PI 183967)cpicpiB008
CSPI01G09200Cucumber (Gy14) v1cgycpiB230
CSPI01G09200Cucurbita maxima (Rimu)cmacpiB063
CSPI01G09200Cucurbita maxima (Rimu)cmacpiB103
CSPI01G09200Cucurbita maxima (Rimu)cmacpiB206
CSPI01G09200Cucurbita moschata (Rifu)cmocpiB056
CSPI01G09200Cucurbita moschata (Rifu)cmocpiB098
CSPI01G09200Cucurbita moschata (Rifu)cmocpiB193
CSPI01G09200Cucumber (Chinese Long) v2cpicuB017
CSPI01G09200Melon (DHL92) v3.5.1cpimeB064
CSPI01G09200Watermelon (Charleston Gray)cpiwcgB075
CSPI01G09200Watermelon (Charleston Gray)cpiwcgB094
CSPI01G09200Cucurbita pepo (Zucchini)cpecpiB359
CSPI01G09200Cucurbita pepo (Zucchini)cpecpiB517
CSPI01G09200Bottle gourd (USVL1VR-Ls)cpilsiB083
CSPI01G09200Cucumber (Gy14) v2cgybcpiB052
CSPI01G09200Silver-seed gourdcarcpiB0398
CSPI01G09200Silver-seed gourdcarcpiB1041
CSPI01G09200Cucumber (Chinese Long) v3cpicucB022