CmaCh18G002140 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G002140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionStructural constituent of ribosome
LocationCma_Chr18 : 1156885 .. 1159598 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGGCAGTCCGCAGAGGAAGTGGAAGACGGGAACACCGGTGAGTCGCCATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCGTCCACTCCACACCGTGAGTCAGTCTCTTTAAATTTTCAGTCTCTTACGAAAGCAAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCCAGAGAATCCGCAAAAAGGAATCGCAAGAGGTTAGTTATCTCGTTTCTAAAGCAAAACTTGATGAGTTGAAATGGCTGCATGTGGATTTTTTGTGATTTAGTTCTTTTGAATTGATTAGATTCTTCATTATGGTGGAATCGTCTGTTTTCTTTCACTTTCTGGGTAGTCAAACAGTGCATTTCGATATCAACTTCTTGAATAGGTTCCTCTTCCAAAAATTCAATCCAAACAGTGGTGCCCTTGAAGCACCAATACCACCATTGTTCTCCTTGGTTTCCTGTTCTCCTCTTCCTTCTGTGATCTTCCATAACATTGTCAAAAAATCGGAAGCCGCCTTAGATCGATCTATATCAATTCAAAGAATTAGCTTATTAAACCTTCTTCTGTTTTAGTGGGAAAGGAAAACAGAGGATAGGGAGGATTTTTCAACAGGAGGATGAAGTTCAAGTAATTGAGCTTGAGTAGCTTAGCTTGCTATAAACTAAAGCAATGATGAATCGTTGAGCAAATGCTTTTTCAGAAAAGTTGTTATCAAACAGGAAAATAGTTGGATGCTGCTTAGTTACAAGGTGATCGTGATTAGTATTAAGATCTAAGAAGGTCACTTATATGGTTGATTTCCATAATCCATCTTTCTTAGTTCAACTTTTGTATTCAAAATAAGAATCTTTTCAGCTCTGGGTTGAATTGCCTAAATAATCTTTGATACCATGAAGAACACTTTCTATGATTTCTGCGAAATCAGTTGAGGCATGTTTCATAATGATATCATTTTTAGTTTTTTTTGGTTTTGAAATTTATGTTTCTTTACTATGTTTTTCACCTTGTTTTTGAATCATTAAATTCCAGAAACAATGACAAAGTTCTAAAACTAATTTTTTTTAATTTTGAAAACATGGCTGGGTTATTTTTGATATTGTGTTCATGGTCCACGCTACTAATTCCAAACTTTAAGGCCAACTTTGAGAGAGAACAAGTTCTCAACCCAAAAGTTTAGACGATATCTCCAAACCTTCCAAACTAGTTTCCATGGATGGGGAATGGTAAAATGAATATTGCTCATTCAATTCACTTCCCATTGCAGACCAAAACTTTGTCTTGCCACTTTGAATCCTTTTGTGTAATCCTAAAACAACTAGGTTTCTTTTTCGTATTTTATTTACTTGGACTTGTTGTTATTGTTTTTTTTTTTTTGGTTATATGAAGTTTTCACTCCTACCATTGCATATTCGTTAGGACAATAACCTATGGGAATGATTGATTTCGAATCATATGACTCTTCTTCTTCCTTTCCTTTCTTAGTTCAATCTTGAATGGAACCGTGAGATCTCACATCGGTTGGAGAGGAAACGAAGCATTTCTTATAAAGGTGTGGAAACCTCTCCTTAGTAGACGCATTTTAAAACCTTGAGGGGAAGTCCTGAAGTGAAATCTCAAAGAGGACAATATCTACTAACGGTAGGCTTGAAATCTTACAAATGTTAACAGAGCCAAACACTGGACAATGTTCTAGCAAGGACGTTGGGTCCCTAAGGGGATGGATTGTGAGATCCCACGTCAGTTGGAGAGGGAAACGAAGCATTTTTTATAAAGGTGTGGAAATTTCTCCCTAGTAGACGCGTTTGAAAACCTTGAGGGGAAGCCTAAAACAGAAAATCCAAAGAGGACAATATCTACTAGAGGTAAACTTCAGCTATTAGAGGAACCTTTTTTTTAGGATTGTTTAAGTCTCTTGTTGTATGTAGTCGTAGTCTCTGCAATTCAATACCGATAGATACATAGAAATATATATTTGCCCCATGGTTGTAAAGTAATGTAGATGTGGTTCCCTAATTGCAGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCTAAAACAGGAAACCACTCGGAGGAAGGATATGAATGAGGAAGAGGACAACTGGGACTTTTACCAAGTAGACCTTCCTTACTGTTCATAGAAAAAGCTCACTGCCTTGAAAAGTTAGAAGCCATTATTTGTAATGTTTTGGCTTAGATCATCTTGCCTTCGACCATCCTTCTGTTGATGTTCTTCAATGAAGGCAGGTCTGTCTTCTGCTTTGAAGTTGAGCTGGTGTAGCAACACAGGACAAGATTGTTTTGTGGTCGAGTATCGGTTGGAAAGCTTTGGCCTTTGTCGAGACGACAAAGGCTTAGGCTTAGGTTCTGTTTGATAACGATTTTGTTTTTAACTATTCGTTACTATGATTTTCATCTCTCAAAAGAGCAGTCTTTTTAGCCAAATTTTGAAATAACAATAATAAAATTACTTTTCATAGTTTTTTA

mRNA sequence

CCGGCAGTCCGCAGAGGAAGTGGAAGACGGGAACACCGGTGAGTCGCCATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCGTCCACTCCACACCGTGAGTCAGTCTCTTTAAATTTTCAGTCTCTTACGAAAGCAAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCCAGAGAATCCGCAAAAAGGAATCGCAAGAGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCTAAAACAGGAAACCACTCGGAGGAAGGATATGAATGAGGAAGAGGACAACTGGGACTTTTACCAAGTAGACCTTCCTTACTGTTCATAGAAAAAGCTCACTGCCTTGAAAAGTTAGAAGCCATTATTTGTAATGTTTTGGCTTAGATCATCTTGCCTTCGACCATCCTTCTGTTGATGTTCTTCAATGAAGGCAGGTCTGTCTTCTGCTTTGAAGTTGAGCTGGTGTAGCAACACAGGACAAGATTGTTTTGTGGTCGAGTATCGGTTGGAAAGCTTTGGCCTTTGTCGAGACGACAAAGGCTTAGGCTTAGGTTCTGTTTGATAACGATTTTGTTTTTAACTATTCGTTACTATGATTTTCATCTCTCAAAAGAGCAGTCTTTTTAGCCAAATTTTGAAATAACAATAATAAAATTACTTTTCATAGTTTTTTA

Coding sequence (CDS)

ATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCGTCCACTCCACACCGTGAGTCAGTCTCTTTAAATTTTCAGTCTCTTACGAAAGCAAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCCAGAGAATCCGCAAAAAGGAATCGCAAGAGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCTAAAACAGGAAACCACTCGGAGGAAGGATATGAATGAGGAAGAGGACAACTGGGACTTTTACCAAGTAGACCTTCCTTACTGTTCATAG

Protein sequence

MDAATTSLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPYCS
Homology
[Close]
BLAST of CmaCh18G002140 vs. TrEMBL
Match: E5GBW8_CUCME (Structural constituent of ribosome OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 108/167 (64.67%), Postives = 129/167 (77.25%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKLARLAAARTRSSVTSSSPESTSP 62
           AAT+S+T FFSFLSISK S  H  SVS+NFQSL K+K  RL A+R   +V SSS E    
Sbjct: 4   AATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASR--GNVASSSQEPKGV 63

Query: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 122
              + NYNVLITV  N+ E+++VN+FR QVLRAGILQECKRRRFFENSQAKRKRKARE+A
Sbjct: 64  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123

Query: 123 KRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPYCS 170
           KRNRKRR  +P+S  E+Q  ++T   K+ +EE+DNWDFYQVDLPY S
Sbjct: 124 KRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]
BLAST of CmaCh18G002140 vs. TrEMBL
Match: A0A0A0LWJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.1e-43
Identity = 108/165 (65.45%), Postives = 128/165 (77.58%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKLARLAAARTRSSVTSSSPESTSP 62
           AAT+S+T FFSFLSISK S  H  SVS+N QSL  +KL RL A+R   +V SSS E    
Sbjct: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASR--GNVASSSQEPKGV 63

Query: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 122
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKRKRKARE+A
Sbjct: 64  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123

Query: 123 KRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPY 168
           KRNRKRR  +P+S   EQ  Q+T   K+ +EE+DNWDFYQVDLPY
Sbjct: 124 KRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 166

[Close]
BLAST of CmaCh18G002140 vs. TrEMBL
Match: A0A0D2V395_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G087400 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.1e-23
Identity = 78/176 (44.32%), Postives = 111/176 (63.07%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHR----ESVSLNFQSLTKAKLARLAAARTRSSVTSSSPE 62
           A + SL+ FFSFL    PS P       S+SL+ Q    A L+  A     SS+++    
Sbjct: 2   ATSLSLSNFFSFLLPPNPSPPKAPPALNSISLSSQKPKNAPLSWSAPEDQSSSLSTELSS 61

Query: 63  STSPILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQ 122
             SP L+  N       YN+ + VD+N+PEE+L+N+FRR+V++AG++QECKRRRFFEN Q
Sbjct: 62  VISPSLANANTLFFKSAYNIQVIVDDNEPEERLLNRFRREVMKAGVIQECKRRRFFENKQ 121

Query: 123 AKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPY 168
            ++KRK+RE+AKRNR+RR   P++R  +  KQE + +K   ++EDNWD     LPY
Sbjct: 122 DEKKRKSREAAKRNRRRR---PQARFSQPNKQEVSTKKRDEDDEDNWDMPNEALPY 174

[Close]
BLAST of CmaCh18G002140 vs. TrEMBL
Match: A0A061EDT6_THECC (Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_017179 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.0e-23
Identity = 79/177 (44.63%), Postives = 113/177 (63.84%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHRESVSLN--FQSLTKAKLARLAAARTRSSVTSSSPEST 62
           A + SL+ F SFL  S P  P  ++  LN  + S  K K   L+ +      +S S E +
Sbjct: 2   ATSLSLSNFLSFLLPSNPPPPPPKAAPLNNLYLSSQKPKNTFLSVSAQEDQSSSLSTELS 61

Query: 63  S---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENS 122
           +   P L+  N       YNV + VD+N+PEE+L+N+FRR+V+RAG++QECKRRRFFEN 
Sbjct: 62  AVICPSLAYANTLFFKSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENK 121

Query: 123 QAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPY 168
           Q ++KRK+RE+AKRNR+RR   P++R+    KQE + +K  ++EEDNW+    DLPY
Sbjct: 122 QDEKKRKSREAAKRNRRRR---PQARSSLPNKQEVSSKKRDDDEEDNWEMPDGDLPY 175

[Close]
BLAST of CmaCh18G002140 vs. TrEMBL
Match: A0A0B0PID3_GOSAR (30S ribosomal S21, chloroplastic OS=Gossypium arboreum GN=F383_31462 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 77/176 (43.75%), Postives = 110/176 (62.50%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHR----ESVSLNFQSLTKAKLARLAAARTRSSVTSSSPE 62
           A + SL+ FFSFL    PS P       S+SL+ Q    A L+  A     SS+++    
Sbjct: 2   ATSLSLSNFFSFLLPPNPSPPKAPPALNSLSLSSQKPKNAPLSWSAPEDQSSSLSTELSS 61

Query: 63  STSPILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQ 122
              P L+  N       YN+ + VD+N+PEE+L+N+FRR+V++AG++QECKRRRFFEN Q
Sbjct: 62  VICPSLANANTLFFKSAYNIQVIVDDNEPEERLLNRFRREVMKAGVIQECKRRRFFENKQ 121

Query: 123 AKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPY 168
            ++KRK+RE+AKRNR+RR   P++R  +  KQE + +K   ++EDNWD     LPY
Sbjct: 122 DEKKRKSREAAKRNRRRR---PQARFSQPNKQEVSTKKGDEDDEDNWDMPNEALPY 174

[Close]
BLAST of CmaCh18G002140 vs. TAIR10
Match: AT3G27160.1 (AT3G27160.1 Ribosomal protein S21 family protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-21
Identity = 75/184 (40.76%), Postives = 111/184 (60.33%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKLAR-------LAAARTRSSVTSS 62
           AA+ SLT F SF+S  K  T      +L   S T ++  R       +A   T S+ +S 
Sbjct: 2   AASFSLTSFISFISPFKSQTKPTPPPNLTLPSPTISQRRRNDLAIESMAVEETSSTASSL 61

Query: 63  SPESTS---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRR 122
           S E  S   P L+  N       YNV + V++N+ EE+LVN+FRR+V+R G++QECKRRR
Sbjct: 62  SSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRR 121

Query: 123 FFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQE---TTRRKDMNEEEDNWDFYQ 167
           +FEN Q ++KR+ R++AKRN+KRR   P++R  ++ ++E    T+ K  +EEEDNW+   
Sbjct: 122 YFENKQDEKKRRTRDAAKRNKKRR---PQARFTQETREEAAAATKSKKKDEEEDNWEMPG 181

[Close]
BLAST of CmaCh18G002140 vs. TAIR10
Match: AT5G63300.2 (AT5G63300.2 Ribosomal protein S21 family protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-08
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 1 

Query: 7   SLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKLARLAAARTRSSVTSSSPESTS----- 66
           SL+E  S L  SKP +P          SL    L    +ART   ++ ++   T+     
Sbjct: 8   SLSELLSSLLSSKPPSP---------SSLKPITLPSSVSARTSQHLSMTTKILTAEHDDV 67

Query: 67  ------PILSVRN--------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFF 126
                 P L+  N        YNV +   + + EE+LVN F+R   RAG+LQE +RRRFF
Sbjct: 68  INRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFF 127

Query: 127 ENSQAKRKRKARESAKRNRKR 129
           E+S  K+ RK +E+AK+ RKR
Sbjct: 128 ESSLEKKTRKTKEAAKKYRKR 139

[Close]
BLAST of CmaCh18G002140 vs. NCBI nr
Match: gi|659067413|ref|XP_008439325.1| (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 3.4e-43
Identity = 108/167 (64.67%), Postives = 129/167 (77.25%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKLARLAAARTRSSVTSSSPESTSP 62
           AAT+S+T FFSFLSISK S  H  SVS+NFQSL K+K  RL A+R   +V SSS E    
Sbjct: 4   AATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASR--GNVASSSQEPKGV 63

Query: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 122
              + NYNVLITV  N+ E+++VN+FR QVLRAGILQECKRRRFFENSQAKRKRKARE+A
Sbjct: 64  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123

Query: 123 KRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPYCS 170
           KRNRKRR  +P+S  E+Q  ++T   K+ +EE+DNWDFYQVDLPY S
Sbjct: 124 KRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]
BLAST of CmaCh18G002140 vs. NCBI nr
Match: gi|778658012|ref|XP_004152510.2| (PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 4.5e-43
Identity = 108/165 (65.45%), Postives = 128/165 (77.58%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKLARLAAARTRSSVTSSSPESTSP 62
           AAT+S+T FFSFLSISK S  H  SVS+N QSL  +KL RL A+R   +V SSS E    
Sbjct: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASR--GNVASSSQEPKGV 63

Query: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 122
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKRKRKARE+A
Sbjct: 64  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123

Query: 123 KRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPY 168
           KRNRKRR  +P+S   EQ  Q+T   K+ +EE+DNWDFYQVDLPY
Sbjct: 124 KRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 166

[Close]
BLAST of CmaCh18G002140 vs. NCBI nr
Match: gi|747101469|ref|XP_011098868.1| (PREDICTED: uncharacterized protein LOC105177419 [Sesamum indicum])

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 81/185 (43.78%), Postives = 113/185 (61.08%), Query Frame = 1 

Query: 4   ATTSLTEFFSFLSISKPSTP-----------HRESVSLNFQSLTKAKLARLAAARTRSSV 63
           AT+S+   FSF + SKP  P           H  + +    S +   LA L  +    S+
Sbjct: 2   ATSSIANLFSFFAPSKPPPPSPTSPPKFPPSHLSATAAPSASSSHPGLAPLVLSNEAQSL 61

Query: 64  TSSSPESTS---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK 123
            S S +  S   P L+  N       YNV + VD+N+PEEKL+ +FRR+V+RAG++QECK
Sbjct: 62  PSCSADVMSVVCPSLAYANTMFFRSAYNVQVIVDDNEPEEKLLGRFRREVMRAGVIQECK 121

Query: 124 RRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQ 168
           RRRFFEN Q ++KRK+RE+AKRNR+RR   P++R   Q +QET++ K  N++EDNWD  +
Sbjct: 122 RRRFFENKQDEKKRKSREAAKRNRRRR---PQARTGPQDRQETSQNKKGNDDEDNWDLPE 181

[Close]
BLAST of CmaCh18G002140 vs. NCBI nr
Match: gi|823255470|ref|XP_012460391.1| (PREDICTED: uncharacterized protein LOC105780545 [Gossypium raimondii])

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 78/176 (44.32%), Postives = 111/176 (63.07%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHR----ESVSLNFQSLTKAKLARLAAARTRSSVTSSSPE 62
           A + SL+ FFSFL    PS P       S+SL+ Q    A L+  A     SS+++    
Sbjct: 2   ATSLSLSNFFSFLLPPNPSPPKAPPALNSISLSSQKPKNAPLSWSAPEDQSSSLSTELSS 61

Query: 63  STSPILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQ 122
             SP L+  N       YN+ + VD+N+PEE+L+N+FRR+V++AG++QECKRRRFFEN Q
Sbjct: 62  VISPSLANANTLFFKSAYNIQVIVDDNEPEERLLNRFRREVMKAGVIQECKRRRFFENKQ 121

Query: 123 AKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPY 168
            ++KRK+RE+AKRNR+RR   P++R  +  KQE + +K   ++EDNWD     LPY
Sbjct: 122 DEKKRKSREAAKRNRRRR---PQARFSQPNKQEVSTKKRDEDDEDNWDMPNEALPY 174

[Close]
BLAST of CmaCh18G002140 vs. NCBI nr
Match: gi|590647261|ref|XP_007031852.1| (Ribosomal protein S21 family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 79/177 (44.63%), Postives = 113/177 (63.84%), Query Frame = 1 

Query: 3   AATTSLTEFFSFLSISKPSTPHRESVSLN--FQSLTKAKLARLAAARTRSSVTSSSPEST 62
           A + SL+ F SFL  S P  P  ++  LN  + S  K K   L+ +      +S S E +
Sbjct: 2   ATSLSLSNFLSFLLPSNPPPPPPKAAPLNNLYLSSQKPKNTFLSVSAQEDQSSSLSTELS 61

Query: 63  S---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENS 122
           +   P L+  N       YNV + VD+N+PEE+L+N+FRR+V+RAG++QECKRRRFFEN 
Sbjct: 62  AVICPSLAYANTLFFKSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENK 121

Query: 123 QAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMNEEEDNWDFYQVDLPY 168
           Q ++KRK+RE+AKRNR+RR   P++R+    KQE + +K  ++EEDNW+    DLPY
Sbjct: 122 QDEKKRKSREAAKRNRRRR---PQARSSLPNKQEVSSKKRDDDEEDNWEMPDGDLPY 175

The following BLAST results are available for this feature:
BLAST of CmaCh18G002140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh18G002140 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBW8_CUCME2.4e-4364.67Structural constituent of ribosome OS=Cucumis melo subsp. melo PE=3 SV=1[more]
A0A0A0LWJ6_CUCSA3.1e-4365.45Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050150 PE=3 SV=1[more]
A0A0D2V395_GOSRA2.1e-2344.32Uncharacterized protein OS=Gossypium raimondii GN=B456_012G087400 PE=3 SV=1[more]
A0A061EDT6_THECC8.0e-2344.63Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_017179 ... [more]
A0A0B0PID3_GOSAR1.0e-2243.7530S ribosomal S21, chloroplastic OS=Gossypium arboreum GN=F383_31462 PE=3 SV=1[more]
BLAST of CmaCh18G002140 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27160.11.0e-2140.76 Ribosomal protein S21 family protein[more]
AT5G63300.22.2e-0836.17 Ribosomal protein S21 family protein[more]
BLAST of CmaCh18G002140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067413|ref|XP_008439325.1|3.4e-4364.67PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo][more]
gi|778658012|ref|XP_004152510.2|4.5e-4365.45PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus][more]
gi|747101469|ref|XP_011098868.1|1.8e-2343.78PREDICTED: uncharacterized protein LOC105177419 [Sesamum indicum][more]
gi|823255470|ref|XP_012460391.1|3.0e-2344.32PREDICTED: uncharacterized protein LOC105780545 [Gossypium raimondii][more]
gi|590647261|ref|XP_007031852.1|1.1e-2244.63Ribosomal protein S21 family protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_S21
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G002140.1CmaCh18G002140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRODOMPD005521coord: 87..111
score: 2.
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 94..104
score: 1.2E-5coord: 74..82
score: 1.2E-5coord: 82..91
score: 1.2E-5coord: 106..116
score: 1.
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 70..126
score: 12
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 73..126
score: 1.7
IPR001911Ribosomal protein S21TIGRFAMsTIGR00030TIGR00030coord: 72..128
score: 5.0
NoneNo IPR availableunknownCoilCoilcoord: 134..154
scor
NoneNo IPR availablePANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 5..159
score: 1.7
NoneNo IPR availablePANTHERPTHR21109:SF028S RIBOSOMAL PROTEIN S21, MITOCHONDRIALcoord: 5..159
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G002140Cucsa.391760Cucumber (Gy14) v1cgycmaB1084
CmaCh18G002140Cla002589Watermelon (97103) v1cmawmB368
CmaCh18G002140Csa1G050150Cucumber (Chinese Long) v2cmacuB390
CmaCh18G002140MELO3C002333Melon (DHL92) v3.5.1cmameB365
CmaCh18G002140ClCG03G003500Watermelon (Charleston Gray)cmawcgB355
CmaCh18G002140CSPI01G09200Wild cucumber (PI 183967)cmacpiB394
CmaCh18G002140CmoCh18G001900Cucurbita moschata (Rifu)cmacmoB408
CmaCh18G002140Lsi02G004730Bottle gourd (USVL1VR-Ls)cmalsiB370
CmaCh18G002140Cp4.1LG09g09840Cucurbita pepo (Zucchini)cmacpeB416
CmaCh18G002140MELO3C002333.2Melon (DHL92) v3.6.1cmamedB424
CmaCh18G002140CsaV3_1G009300Cucumber (Chinese Long) v3cmacucB0464
CmaCh18G002140Cla97C03G054570Watermelon (97103) v2cmawmbB414
CmaCh18G002140Bhi08G001383Wax gourdcmawgoB0521
CmaCh18G002140CsGy1G009220Cucumber (Gy14) v2cgybcmaB085
CmaCh18G002140Carg06774Silver-seed gourdcarcmaB0692
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G002140Cucurbita maxima (Rimu)cmacmaB102
CmaCh18G002140Cucurbita maxima (Rimu)cmacmaB141
CmaCh18G002140Cucurbita maxima (Rimu)cmacmaB210
CmaCh18G002140Cucurbita moschata (Rifu)cmacmoB390
CmaCh18G002140Cucurbita moschata (Rifu)cmacmoB394
CmaCh18G002140Watermelon (Charleston Gray)cmawcgB369
CmaCh18G002140Cucurbita pepo (Zucchini)cmacpeB427
CmaCh18G002140Cucurbita pepo (Zucchini)cmacpeB443
CmaCh18G002140Silver-seed gourdcarcmaB1395
CmaCh18G002140Watermelon (97103) v2cmawmbB431