Cp4.1LG09g09840 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g09840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	30S ribosomal protein S21
Location	Cp4.1LG09 : 8723754 .. 8726283 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCTTCCACTCCACACCTTGAGTCAGTCTCTTTAAATTTTCAGTCTCTTACGAAGCCAAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTTTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGGTTAGTTATCTCGTTTCTAAAGCAAAACTTGATGAGATGAAATGGCTGCATGTGGATTTTTTGTGATTTAGTTCTTTCGAATTGATTAGATTGTAGGGATTTTCTTGGTGGAATCGTCTGTTTTCTTTCACTTTCTGGGCAGCCAAACAGTGCATTTCGATATCAACTTCTTGAATAGGTTCCTCTTCCAAAAATTCAATCCAAACAGTTGTGCCCTTGAAGCACCAATACCACCATTGTTCTCCTTGGTTTCCTATTCTCCTCTCCCTCTTTTGATCTTCCATAACATCGTCCAAAACTCAGAATCCGCCCTTAGATTGATCAATATCAATTCAAAGAATTAGCTTATTAGACCTTCTTCTAATTTAGTGGGAGAGGAAAACAGAGGATAGGGAGGATTTTTCAACTGGAGGATTAAGTTCCAGTAATTGAACTTGAGTAGCTTAGCCAGCTATAAACTAAAGCAATGATGAATCGTTGAGCAAAATCAAACAGGAAAATAGTTGGATGCTGCTTAGTTACAATGTGATCGTGATTAGTATTAAGATTATTGGATAATAAGGTCACTTATATGGTTGATTTCCATAATCCATCTTTCTTAGTGCAACTTTTGTATTCAAAATAAGAATCTTTTCAGCTCTGGGTTGAATTGCCTAAATGATCTTGATACCATGAAGAACACTTTCTATGATTTCTGCGAAATCAGTTGAGGCATGTTTCATAATGATATCATTTTTAGTTTTTTTTGGTTTTGAAATTTATGTTTCTTTACTATGTTTTTCACCTTGTTTTTGAATCATTAAATTCCAGAAACAATGACAAAGTTCTAAAACTAATTTTTTTTTAATTTTCAAAACATGGCTGGGTTATTTTTGATATTGTGTTCATGGTCCACGCTACTAATTCCAAACATTAAGGCCAACTTTGAGAGAGAACAAGTTCTCAACAGGGGGTTAGCCACCAAAAGTTTAGACGATATCTCCAAACCTTCCAAACTAGTTTCCATGGATGGGGAATGGTAAAATGAATATTGCTCATTCAATTCACTTCCCATTGCAGACCAAAACTTTGTCTTGCCACTTTGAATCCTCTTGTGTAATCCTAAAACAACTAGGTTCCTTTTTCGTATTTTATTTACTTGGACTTGTTGTTCTTGTTTTTTTTCGGGTTATATGAAGTTTTCACTCCTACCCAATTCGTTAGGACAATAACCTATGTGAATGATTGATTTCGAATCATATGACTCTTCTTCTTCCTTTCCTTTCTTAGTTCAATCTCGAATGGAACCGTGAGATCTCAAATCGGTTGGAGAGGGGAACAAAACATTTCTTATAAATGTGTGGAAACCTCTCCCTAGTAGACACGTTTTGAAACCTTGAGGGAAAGTCCAGAAAGGAAAGCCTAAAGAGAACAACATTTGCAAGCGGTGGGCTTGAGCTGTTACTAATAGTATCAAAGCCAGACACCGGGCGGTGTGCCAGCAAAGACGTTGGGTCTCCAAGGGGGGTGGATTGTGAGATCCCCACATCGGTTAGAGAGGGGAACGAAATATTTCTTATAAATGTGTGGAAACTTCTCCCTAGTAGACGCGATTTAACCCTTGAGAGAAAGCCCAAAGAGGACCATATATGCTATCAGTGGGCTTCAGCTTCAGCTGGTACAGGACCCTTTTCTTTTTTTAGGATTGTTTAAGCCTCTAGTTCTATGTAGTCGTAGTCTGTGCGTGTGCGTAGATACGTAGTTACGTAGACATATATATTTGCCCCCATGGTTTTTAAGTAACGTAGATGTGGTTCCCCAATTGCAGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCTAAAACAGGAAACCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAAGTAGACCTTCCTTACTGTTCATAGAAAAAGCTCACTGCCTTGAAAGTTGAAGCCATTGTTTGTAATGTTTTGGCTTAGATCATCTTGCCTTCGAGCAGGACGAGATTGTTTTGTGGTCGAGTATCGGTTGCAAAGCTTTGGCCTTTGTCGAGACGACAAAGGCTTAGGCTTAGATTCTGTTTGATAACGATTTTGTCTTTTAATTTTTTTGTTGTTAGTAATTAAATTTATTTTCTC

mRNA sequence

ATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCTTCCACTCCACACCTTGAGTCAGTCTCTTTAAATTTTCAGTCTCTTACGAAGCCAAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTTTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCTAAAACAGGAAACCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAAGTAGACCTTCCTTACTGTTCATAGAAAAAGCTCACTGCCTTGAAAGTTGAAGCCATTGTTTGTAATGTTTTGGCTTAGATCATCTTGCCTTCGAGCAGGACGAGATTGTTTTGTGGTCGAGTATCGGTTGCAAAGCTTTGGCCTTTGTCGAGACGACAAAGGCTTAGGCTTAGATTCTGTTTGATAACGATTTTGTCTTTTAATTTTTTTGTTGTTAGTAATTAAATTTATTTTCTC

Coding sequence (CDS)

ATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCTTCCACTCCACACCTTGAGTCAGTCTCTTTAAATTTTCAGTCTCTTACGAAGCCAAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTTTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCTAAAACAGGAAACCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAAGTAGACCTTCCTTACTGTTCATAG

Protein sequence

MDAATTSLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQVDLPYCS

Homology

[Close]

BLAST of Cp4.1LG09g09840 vs. TrEMBL
Match: E5GBW8_CUCME (Structural constituent of ribosome OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.9e-43
Identity = 108/167 (64.67%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 3   AATTSLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKLARLAAARTRSSVTSSSPESTSP 62
           AAT+S+T FFSFLSISK S  H  SVS+NFQSL K K  RL A+R   +V SSS E    
Sbjct: 4   AATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASR--GNVASSSQEPKGV 63

Query: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 122
              + NYNVLITV  N+ E+++VN+FR QVLRAGILQECKRRRFFENSQAKRKRKARE+A
Sbjct: 64  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123

Query: 123 KRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQVDLPYCS 170
           KRNRKRR  +P+S  E+Q  ++T   K+ DE DDNW+FYQVDLPY S
Sbjct: 124 KRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]

BLAST of Cp4.1LG09g09840 vs. TrEMBL
Match: A0A0A0LWJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.9e-43
Identity = 108/165 (65.45%), Postives = 126/165 (76.36%), Query Frame = 1


Query: 3   AATTSLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKLARLAAARTRSSVTSSSPESTSP 62
           AAT+S+T FFSFLSISK S  H  SVS+N QSL   KL RL A+R   +V SSS E    
Sbjct: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASR--GNVASSSQEPKGV 63

Query: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 122
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKRKRKARE+A
Sbjct: 64  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123

Query: 123 KRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQVDLPY 168
           KRNRKRR  +P+S   EQ  Q+T   K+ DE DDNW+FYQVDLPY
Sbjct: 124 KRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 166

[Close]

BLAST of Cp4.1LG09g09840 vs. TrEMBL
Match: A0A061EDT6_THECC (Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_017179 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.4e-24
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1


Query: 3   AATTSLTEFFSFLSISKPSTPHLESVSLN--FQSLTKPKLARLAAARTRSSVTSSSPEST 62
           A + SL+ F SFL  S P  P  ++  LN  + S  KPK   L+ +      +S S E +
Sbjct: 2   ATSLSLSNFLSFLLPSNPPPPPPKAAPLNNLYLSSQKPKNTFLSVSAQEDQSSSLSTELS 61

Query: 63  S---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENS 122
           +   P L+  N       YNV + VD+N+PEE+L+N+FRR+V+RAG++QECKRRRFFEN 
Sbjct: 62  AVICPSLAYANTLFFKSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENK 121

Query: 123 QAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQVDLPY 168
           Q ++KRK+RE+AKRNR+RR   P++R+    KQE + +K  D+ +DNWE    DLPY
Sbjct: 122 QDEKKRKSREAAKRNRRRR---PQARSSLPNKQEVSSKKRDDDEEDNWEMPDGDLPY 175

[Close]

BLAST of Cp4.1LG09g09840 vs. TrEMBL
Match: A0A0B0PID3_GOSAR (30S ribosomal S21, chloroplastic OS=Gossypium arboreum GN=F383_31462 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.0e-23
Identity = 80/179 (44.69%), Postives = 115/179 (64.25%), Query Frame = 1


Query: 3   AATTSLTEFFSFLSISKPSTPH----LESVSLNFQSLTKPKLARLAAARTRSSVTSSSPE 62
           A + SL+ FFSFL    PS P     L S+SL+ Q   KPK A L+ +      +S S E
Sbjct: 2   ATSLSLSNFFSFLLPPNPSPPKAPPALNSLSLSSQ---KPKNAPLSWSAPEDQSSSLSTE 61

Query: 63  STS---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFE 122
            +S   P L+  N       YN+ + VD+N+PEE+L+N+FRR+V++AG++QECKRRRFFE
Sbjct: 62  LSSVICPSLANANTLFFKSAYNIQVIVDDNEPEERLLNRFRREVMKAGVIQECKRRRFFE 121

Query: 123 NSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQVDLPY 168
           N Q ++KRK+RE+AKRNR+RR   P++R  +  KQE + +K  ++ +DNW+     LPY
Sbjct: 122 NKQDEKKRKSREAAKRNRRRR---PQARFSQPNKQEVSTKKGDEDDEDNWDMPNEALPY 174

[Close]

BLAST of Cp4.1LG09g09840 vs. TrEMBL
Match: A0A067FKH3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030105mg PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.0e-23
Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 1


Query: 6   TSLTEFFSFL----SISKPSTPHLESVSLNFQSLTKPKLA---RLAAARTRSSVTSSSPE 65
           T L+ FFSF+    ++ K STP  +   L+  S  KPK A   ++A A+ + S  SSS  
Sbjct: 3   TPLSNFFSFILPSNALPKNSTPLAQPNHLSLSSQQKPKNASFSKVAPAQPQESHDSSSAS 62

Query: 66  STS--------PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKR 125
           S+S        P L+  N       YNV + VD N+PEE+L+N+FRR+V+RAG++QECKR
Sbjct: 63  SSSTELASVICPSLAYANTLFFKSAYNVQVVVDENEPEERLLNRFRREVMRAGVIQECKR 122

Query: 126 RRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQV 168
           RRFFE  Q ++KRK RE+AKRNR+RR    + R   Q +QE T  K  D+ +DNWE  + 
Sbjct: 123 RRFFETKQDEKKRKTREAAKRNRRRR---SQFRGPVQNRQEATPTKKDDDDEDNWELPEG 182

[Close]

BLAST of Cp4.1LG09g09840 vs. TAIR10
Match: AT3G27160.1 (AT3G27160.1 Ribosomal protein S21 family protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-21
Identity = 75/184 (40.76%), Postives = 109/184 (59.24%), Query Frame = 1


Query: 3   AATTSLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKLAR-------LAAARTRSSVTSS 62
           AA+ SLT F SF+S  K  T      +L   S T  +  R       +A   T S+ +S 
Sbjct: 2   AASFSLTSFISFISPFKSQTKPTPPPNLTLPSPTISQRRRNDLAIESMAVEETSSTASSL 61

Query: 63  SPESTS---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRR 122
           S E  S   P L+  N       YNV + V++N+ EE+LVN+FRR+V+R G++QECKRRR
Sbjct: 62  SSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRR 121

Query: 123 FFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQE---TTRRKDMDEGDDNWEFYQ 167
           +FEN Q ++KR+ R++AKRN+KRR   P++R  ++ ++E    T+ K  DE +DNWE   
Sbjct: 122 YFENKQDEKKRRTRDAAKRNKKRR---PQARFTQETREEAAAATKSKKKDEEEDNWEMPG 181

[Close]

BLAST of Cp4.1LG09g09840 vs. TAIR10
Match: AT5G63300.2 (AT5G63300.2 Ribosomal protein S21 family protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-08
Identity = 51/141 (36.17%), Postives = 72/141 (51.06%), Query Frame = 1


Query: 7   SLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKLARLAAARTRSSVTSSSPESTS----- 66
           SL+E  S L  SKP +P          SL    L    +ART   ++ ++   T+     
Sbjct: 8   SLSELLSSLLSSKPPSP---------SSLKPITLPSSVSARTSQHLSMTTKILTAEHDDV 67

Query: 67  ------PILSVRN--------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFF 126
                 P L+  N        YNV +   + + EE+LVN F+R   RAG+LQE +RRRFF
Sbjct: 68  INRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRRFF 127

Query: 127 ENSQAKRKRKARESAKRNRKR 129
           E+S  K+ RK +E+AK+ RKR
Sbjct: 128 ESSLEKKTRKTKEAAKKYRKR 139

[Close]

BLAST of Cp4.1LG09g09840 vs. NCBI nr
Match: gi|778658012|ref|XP_004152510.2| (PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.0e-42
Identity = 108/165 (65.45%), Postives = 126/165 (76.36%), Query Frame = 1


Query: 3   AATTSLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKLARLAAARTRSSVTSSSPESTSP 62
           AAT+S+T FFSFLSISK S  H  SVS+N QSL   KL RL A+R   +V SSS E    
Sbjct: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASR--GNVASSSQEPKGV 63

Query: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 122
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKRKRKARE+A
Sbjct: 64  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123

Query: 123 KRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQVDLPY 168
           KRNRKRR  +P+S   EQ  Q+T   K+ DE DDNW+FYQVDLPY
Sbjct: 124 KRNRKRRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 166

[Close]

BLAST of Cp4.1LG09g09840 vs. NCBI nr
Match: gi|659067413|ref|XP_008439325.1| (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 1.0e-42
Identity = 108/167 (64.67%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 3   AATTSLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKLARLAAARTRSSVTSSSPESTSP 62
           AAT+S+T FFSFLSISK S  H  SVS+NFQSL K K  RL A+R   +V SSS E    
Sbjct: 4   AATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASR--GNVASSSQEPKGV 63

Query: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 122
              + NYNVLITV  N+ E+++VN+FR QVLRAGILQECKRRRFFENSQAKRKRKARE+A
Sbjct: 64  SSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123

Query: 123 KRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQVDLPYCS 170
           KRNRKRR  +P+S  E+Q  ++T   K+ DE DDNW+FYQVDLPY S
Sbjct: 124 KRNRKRRFRRPQSTTEKQPDKKTPESKNKDEEDDNWDFYQVDLPYSS 168

[Close]

BLAST of Cp4.1LG09g09840 vs. NCBI nr
Match: gi|747101469|ref|XP_011098868.1| (PREDICTED: uncharacterized protein LOC105177419 [Sesamum indicum])

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-23
Identity = 80/185 (43.24%), Postives = 114/185 (61.62%), Query Frame = 1


Query: 4   ATTSLTEFFSFLSISKPSTP-----------HLESVSLNFQSLTKPKLARLAAARTRSSV 63
           AT+S+   FSF + SKP  P           HL + +    S + P LA L  +    S+
Sbjct: 2   ATSSIANLFSFFAPSKPPPPSPTSPPKFPPSHLSATAAPSASSSHPGLAPLVLSNEAQSL 61

Query: 64  TSSSPESTS---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK 123
            S S +  S   P L+  N       YNV + VD+N+PEEKL+ +FRR+V+RAG++QECK
Sbjct: 62  PSCSADVMSVVCPSLAYANTMFFRSAYNVQVIVDDNEPEEKLLGRFRREVMRAGVIQECK 121

Query: 124 RRRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQ 168
           RRRFFEN Q ++KRK+RE+AKRNR+RR   P++R   Q +QET++ K  ++ +DNW+  +
Sbjct: 122 RRRFFENKQDEKKRKSREAAKRNRRRR---PQARTGPQDRQETSQNKKGNDDEDNWDLPE 181

[Close]

BLAST of Cp4.1LG09g09840 vs. NCBI nr
Match: gi|590647261|ref|XP_007031852.1| (Ribosomal protein S21 family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1


Query: 3   AATTSLTEFFSFLSISKPSTPHLESVSLN--FQSLTKPKLARLAAARTRSSVTSSSPEST 62
           A + SL+ F SFL  S P  P  ++  LN  + S  KPK   L+ +      +S S E +
Sbjct: 2   ATSLSLSNFLSFLLPSNPPPPPPKAAPLNNLYLSSQKPKNTFLSVSAQEDQSSSLSTELS 61

Query: 63  S---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENS 122
           +   P L+  N       YNV + VD+N+PEE+L+N+FRR+V+RAG++QECKRRRFFEN 
Sbjct: 62  AVICPSLAYANTLFFKSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENK 121

Query: 123 QAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQVDLPY 168
           Q ++KRK+RE+AKRNR+RR   P++R+    KQE + +K  D+ +DNWE    DLPY
Sbjct: 122 QDEKKRKSREAAKRNRRRR---PQARSSLPNKQEVSSKKRDDDEEDNWEMPDGDLPY 175

[Close]

BLAST of Cp4.1LG09g09840 vs. NCBI nr
Match: gi|641845064|gb|KDO63954.1| (hypothetical protein CISIN_1g030105mg [Citrus sinensis])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 1


Query: 6   TSLTEFFSFL----SISKPSTPHLESVSLNFQSLTKPKLA---RLAAARTRSSVTSSSPE 65
           T L+ FFSF+    ++ K STP  +   L+  S  KPK A   ++A A+ + S  SSS  
Sbjct: 3   TPLSNFFSFILPSNALPKNSTPLAQPNHLSLSSQQKPKNASFSKVAPAQPQESHDSSSAS 62

Query: 66  STS--------PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKR 125
           S+S        P L+  N       YNV + VD N+PEE+L+N+FRR+V+RAG++QECKR
Sbjct: 63  SSSTELASVICPSLAYANTLFFKSAYNVQVVVDENEPEERLLNRFRREVMRAGVIQECKR 122

Query: 126 RRFFENSQAKRKRKARESAKRNRKRRVWKPESRAEEQLKQETTRRKDMDEGDDNWEFYQV 168
           RRFFE  Q ++KRK RE+AKRNR+RR    + R   Q +QE T  K  D+ +DNWE  + 
Sbjct: 123 RRFFETKQDEKKRKTREAAKRNRRRR---SQFRGPVQNRQEATPTKKDDDDEDNWELPEG 182

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g09840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g09840 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBW8_CUCME	6.9e-43	64.67	Structural constituent of ribosome OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0LWJ6_CUCSA	6.9e-43	65.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050150 PE=3 SV=1	[more]
A0A061EDT6_THECC	9.4e-24	45.20	Ribosomal protein S21 family protein isoform 1 OS=Theobroma cacao GN=TCM_017179 ...	[more]
A0A0B0PID3_GOSAR	8.0e-23	44.69	30S ribosomal S21, chloroplastic OS=Gossypium arboreum GN=F383_31462 PE=3 SV=1	[more]
A0A067FKH3_CITSI	8.0e-23	44.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030105mg PE=3 SV=1	[more]

BLAST of Cp4.1LG09g09840 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27160.1	1.3e-21	40.76	Ribosomal protein S21 family protein	[more]
AT5G63300.2	2.9e-08	36.17	Ribosomal protein S21 family protein	[more]

BLAST of Cp4.1LG09g09840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658012\|ref\|XP_004152510.2\|	1.0e-42	65.45	PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus]	[more]
gi\|659067413\|ref\|XP_008439325.1\|	1.0e-42	64.67	PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo]	[more]
gi\|747101469\|ref\|XP_011098868.1\|	1.0e-23	43.24	PREDICTED: uncharacterized protein LOC105177419 [Sesamum indicum]	[more]
gi\|590647261\|ref\|XP_007031852.1\|	1.4e-23	45.20	Ribosomal protein S21 family protein isoform 1 [Theobroma cacao]	[more]
gi\|641845064\|gb\|KDO63954.1\|	1.1e-22	44.57	hypothetical protein CISIN_1g030105mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR001911	Ribosomal_S21

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g09840.1	Cp4.1LG09g09840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRODOM	PD005521		coord: 87..111 score: 2.
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 94..104 score: 1.2E-5coord: 74..82 score: 1.2E-5coord: 82..91 score: 1.2E-5coord: 106..116 score: 1.
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 70..126 score: 12
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 73..126 score: 1.7
IPR001911	Ribosomal protein S21	TIGRFAMs	TIGR00030	TIGR00030	coord: 72..128 score: 5.0
None	No IPR available	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 6..159 score: 2.5
None	No IPR available	PANTHER	PTHR21109:SF0	28S RIBOSOMAL PROTEIN S21, MITOCHONDRIAL	coord: 6..159 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g09840	Cucsa.391760	Cucumber (Gy14) v1	cgycpeB1034
Cp4.1LG09g09840	CmaCh18G002140	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g09840	CmoCh18G001900	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g09840	Cla002589	Watermelon (97103) v1	cpewmB025
Cp4.1LG09g09840	Csa1G050150	Cucumber (Chinese Long) v2	cpecuB029
Cp4.1LG09g09840	MELO3C002333	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g09840	ClCG03G003500	Watermelon (Charleston Gray)	cpewcgB036
Cp4.1LG09g09840	CSPI01G09200	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g09840	Lsi02G004730	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g09840	MELO3C002333.2	Melon (DHL92) v3.6.1	cpemedB031
Cp4.1LG09g09840	CsaV3_1G009300	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g09840	Bhi08G001383	Wax gourd	cpewgoB0046
Cp4.1LG09g09840	CsGy1G009220	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g09840	Carg06774	Silver-seed gourd	carcpeB0694

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g09840	Cucurbita pepo (Zucchini)	cpecpeB045
Cp4.1LG09g09840	Cucurbita maxima (Rimu)	cmacpeB214
Cp4.1LG09g09840	Cucurbita moschata (Rifu)	cmocpeB184
Cp4.1LG09g09840	Silver-seed gourd	carcpeB1396