Carg06774 (gene) Silver-seed gourd

Overview
NameCarg06774
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description30S ribosomal protein S21
LocationCucurbita_argyrosperma_scaffold_012 : 921530 .. 926212 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGCCGGTGACAGTTGGCCAATTACGGTTGCAATGTCGTTGCCCACCGGGTAGGAACCTGTTGGGTATTTTACTTTTAGTTGCTCAAAGAGGTCATATTTTTTAAGGCGTAGAAATAATGCCTGTCCAACTGGCCGCATGCCCTATGGCTGTTGTCTTCTAGTCATGCTTGTCTAGACATGTTGTCTATGGTTGCATGCTCGTTTCAAACCTTCTTTTTTACTTTAGTGTCATGGTCATGTTTGTCCAAGGCGTGTTGCCTTTGGCGGACGGCATGGTTGGATTGTTGATCTGACTGGTCATGTCTTGTCTAGACATGTTGTCTAATGTTGTTGCATATCTACGCAAGAACTAAACTTGTTTTTACTTATAGTAACTTTAGATCGGTCAATAGGGAATGTGCTCACTGTCTAAGGCTAGTTTGGATGTCGAGAATGTGCTTATTCTACTGTCATGTTGAAATCTATTAGTTTGGGGTTTTGCGCTTGTCTTAATATTAGACTATATGTTGTCTATGCGCTCTATCGAAGGACGCATACAGTGTCTAGTACATCAGTATAACTTGCTTTTATGATACTATCATATACTATTTATAGCCATAGTTCGTATCAATTGGATCATATTACCTGTCTAAGGCACTACGTTTGTGCTGTTGGTATATTTGTGATCTGAGAATCACGTGATCATCTCAGTGCGCCACTGATTTGATATTGTTAATAGGTAATAGTATGGGTCTGCATTAGTGGAGGCACTGTGTTCGATTAGACAGATACCTGCTATTTAGCTCGCTTAAGTCAGGTGTAGTAAGCTTTTGTTACTATATCTTTGTTGCATACTCATGAGTAAATGTACTAAAGCCGGGTATCAGTAATAGCATCGGTTGTCAAACGAACAAGTCCATGTCTAGCAGCCCATCATGGCTAATAAACTCCCAAAAATGTATGCCGCCCTAGACAGTCCAGGAATGCGATTGAGTCGTCCACACAGACTTTGTTGTATAATATGAACCTTAGTGGAGTGTGTGCACAATAGTTTTTGAGAGCTAGACCAGACCATTATCGCAATTCTTTCTATCCAAGTTTCTATATGCCATGTATAAGACGTATGATGGTTCCACAATACGGTTTTGGTTTATAACATTCGTAGTTTTTTTTTTTTTTTTGATTTTGTTTTTTATCAAAATGGATTATTCTAACAGCATTACATCACTCGTCGGTTTTTGCAAAAAACGTTTGCTCTCTCGCAACGTGATCACGAAGTTTGAGCATTTGATCGACATATTTGGTCAGTGAGAAGTCTAAATCTCAATGTCGACACTGAGTACTTGGTTAGGCTAAAACAAGTGTCTTGCTATCTAGCCTCACTGTACATCCAGTGTGTAACTCTTTTGAGGTAGATAGAGATTCAGATCGATGAGCAATCAACGAATTTACATTTTCCAGCACTGGATCGAGAGCAAGTTGCAACGAGAACAGTGTGACACAAGCTGCCACAAGTGTCGCATAATTAATATCCTGTTGCCGCAAGAGTTGCCGCAAGAGTGCAGTTGTTAGACATATTAGCAAATTCCCCAATGTATGGGCTGGGCTCCACTCAATCGGCCTATAACTGACCCAACCAGCCCATTAGCAAAAGGACCTACGCTTCACCTGCCCGACAGGGGCTCGGCCGGCAGTCCGCAGAGGAAGTGGAAGACGGGGAAGACGGTGAGTCGCCATGGACGCCGCTACAACATCTCTCACGGAGTTCTTCTCCTTCCTCTCCATCTCGAAACCGTCTACTCCACACCTTGAGTCAGTCTCTTTAAACTTTCAGTCTCTTACGAAGCCAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGGTTAGTCATCTCGTTTCTAAAAGGAATCGCAAGAGGTTAGTCATCTCGTTTCTAAAGCAAAACTTGATGAGATGAAATGGCTGCATGTAGATTTTTTGTGATTTAGTTCTTTTGAATTGATTAGATTGTAGGGATTTTCTTGGTGGAATCGTCTGTTTTCTTTCACTTTCTGGGCAGCCAAACAGTGCATTTCGATATCAACTTCTTGAATAGGTTCCTCTTCCAAAAATTCAATCCAAACAGTTGTGCCCTTGAAGCACCAATACCACCATTGTTCTCCTTGGTTTCCTGTTCTCTTCCTTTTGTGATCTTCCATAACATTGTCAAAAACTCAGAAGCCGCCCTTAGATTGATCAATATCAATTCAAAGAATTAGCTTATTAGACCTTCTTCTAATTTAGTGGGAGAGGAAAACAGAGGATAGTGAGGATTTTTCAACTGGAGGATGAAGTTCCAGTAATTGAACTTGAGTTGCTTAGCCAGCCATAAACTAAAGCAATGATGAATCGTTGAGCAAAATCAAACAGGAAAATAGTTGGATGCTGCTTAGTTACAAGGTGATCGTGATTAGTATTAAGATTATTGGCTAAGAAGGTCACTTATATGGTTGATTTCCATAATCCATCTTTCTTAGTGCAATTTTTGTATTAAAAAAGAGAATCTTTTCAGCTCTGAGTTGAATTACCTAAATAATTTTGATGCCATGAAGAACACTTTCTATGATTCATTTTTAGTTTTTTTGTTTTGTTTTGAAATCTAAGTTTCTTTACAATGTTTTTCACCTTGTTCTTGAATCATTAAATTCCAGAAACAATGACAAAGTTTTAAAACTTTTTTTTTTTTTTAATTTTCAAAACATGGCTGGGTTATTTTTTATATTGGTAGAAAATAGAAACAAAACAAAGAAACTCATGGGTTATAGTATTGTTTATAAACTTTTTTAAAAGATCATAGGTTTAATCTTGTGGATTGTTTTGCTGTTAAGTTCTCTATATTTGTTTCAGAGGCCTTACTCTCTTTGTATTGTGTTCATGGTCCACGCTACTAATTCCGAACGTTAAGGCAACTACTTTGAGAGAGAACAAGTTTTCAACCGGAGGGTTTGAACCCAAAAATTTAGACGATATCTCCAAACCTACCAAACTAGTTTTCATGGATGGGGATTCAATTCGCTTCCCATTGCAGACCAAAACTTCGTACTGCCATTTTGAATCCAAGCATCACTTTGAATCCTTTTGTGCAATCCTGAAAAAACTAGGTTTCTTTTTCATATTTTATTTACTTGGACTTTTTGTTCTTGTTTTCGAGTTATGTGAAGCTTTCACTCCTACCATTACTTATTCGTTAGGACAATAACCTATGGGAATGATTGATTTTGAATTATATGGCTCTTCTTCTTCCTTCCCTTTCTTAGTTCAATCTGGAATGGAACAATGAGATCTCACATCGGTTGGAGAGGGGAACGAAACATTTCTTATAAAGGTGTGGAAACCTCTCAGATGCGTTTTAAAACCTCGAGGGAAAGCTCAGAAGGGAAAGCCCAAAGAGGACAATATCTACTGGCGGTGGGCTTGAGCTCTTACAAATGGTATCAGAGCCAAACACTGGACGATGTGCTAGTAAGGATGCTAGGTCCCTAAGGGGATGGATTGTGAGATCCCACGTCGGTTTGAAAGGGGAACAAAGCATTTTTTTATAAAGATGTGGAAACTTCTCCCTCGTAGACGCATTTGAAAACCTTGAGGGGAAGCCTAAAAGGGAAAACCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTTAGCTATTACAGGAACCTTTTTTTTAGGATTGTTTACGTCTCTAGTTCTATGTAGTCGTAGTCTCTGCAATTCAATACCGATAGATACATAGAAATATATATTTGCCCCATGGTTTTAAAGTAATGTAGATGTGGTTCCCCAATTGCAGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCAAAAACAGGAAACCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAAGTAGACCTTCCTTACTGTTCATAGAAAAAGCTCACTGCCTTGAGAGTTGAAGCCATTATTTGTAATGTTTTGGCTTAGAGCATCTTGCCTTCGAGCATCCTTCTGTTGATGTTATTCAATGCAGGCAGGTCTGTCTTCTGCTTTGAAGTTGAGCTGGTGTAGTTAGCAACACAGGACGAGTTTGTTTTGTGGTCGAGTATCGGTTGCAAAGCTTTGGCCTTTGTCGAGACGACAAAGGCTTAGGGTCTGTCTTCTGCTTTGAAGTTGAGCTGGTGTAGTTAGCAACACAGGACAAGATTGTTTTGTGGTCGAGTATCGGTTGCAAAGCTTTGGCCTTTGTCGAGACGACAAAGGCTTGGGGTCTGTCTTCTGCTTTGAAGTTGAGCTGGTGTAGCTAGCAACACAGGACAAGATTGTTTTGTGGTCGATTATCGGTTGCAAAACTTTGGCCTTTGTCGAGATGACAAAGGCTTAGGCTTAGGTTCTGTTTGATAATGATTTTGTCTTTTAATTTTTTGTTTTTAGTAATTAA

mRNA sequence

ATGTGTGCCGGTGACAGTTGGCCAATTACGGTTGCAATGTCGTTGCCCACCGGGACCTACGCTTCACCTGCCCGACAGGGGCTCGGCCGGCAGTCCGCAGAGGAAGTGGAAGACGGGGAAGACGTCTCTTACGAAGCCAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGAGGCCTTACTCTCTTTGTATTGTGTTCATGGTCCACGCTACTAATTCCGAACGTTAAGGCAACTACTTTGAGAGAGAACAAGTTTTCAACCGGAGGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCAAAAACAGGAAACCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAATTAGCAACACAGGACAAGATTGTTTTGTGGTCGAGTATCGGTTGCAAAGCTTTGGCCTTTGTCGAGACGACAAAGGCTTGGGGTCTGTCTTCTGCTTTGAAGTTGAGCTGTAATTAA

Coding sequence (CDS)

ATGTGTGCCGGTGACAGTTGGCCAATTACGGTTGCAATGTCGTTGCCCACCGGGACCTACGCTTCACCTGCCCGACAGGGGCTCGGCCGGCAGTCCGCAGAGGAAGTGGAAGACGGGGAAGACGTCTCTTACGAAGCCAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCGTAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAGAGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGAGGCCTTACTCTCTTTGTATTGTGTTCATGGTCCACGCTACTAATTCCGAACGTTAAGGCAACTACTTTGAGAGAGAACAAGTTTTCAACCGGAGGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCAAAAACAGGAAACCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAATTAGCAACACAGGACAAGATTGTTTTGTGGTCGAGTATCGGTTGCAAAGCTTTGGCCTTTGTCGAGACGACAAAGGCTTGGGGTCTGTCTTCTGCTTTGAAGTTGAGCTGTAATTAA

Protein sequence

MCAGDSWPITVAMSLPTGTYASPARQGLGRQSAEEVEDGEDVSYEAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQLATQDKIVLWSSIGCKALAFVETTKAWGLSSALKLSCN
Homology
[Close]
BLAST of Carg06774 vs. NCBI nr
Match: XP_022954830.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 5.0e-36
Identity = 99/156 (63.46%), Postives = 100/156 (64.10%), Query Frame = 0 

Query: 48  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQ 107
           LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQ
Sbjct: 40  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQ 99

Query: 108 ECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTG 167
           ECKRRRFFENSQAKR                                             
Sbjct: 100 ECKRRRFFENSQAKR--------------------------------XXXXXXXXXXXXX 159

Query: 168 GRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL 204
                     EEQQKQE TRRKDMDEGDDNWEFYQ+
Sbjct: 160 XXXXXXXXXXEEQQKQEITRRKDMDEGDDNWEFYQV 163

[Close]
BLAST of Carg06774 vs. NCBI nr
Match: XP_023542788.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 7.5e-24
Identity = 75/133 (56.39%), Postives = 76/133 (57.14%), Query Frame = 0 

Query: 71  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESA 130
           ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKR        
Sbjct: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKR-------- 122

Query: 131 KRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKD 190
                                   K                        Q KQETTRRKD
Sbjct: 123 ------------------------KXXXXXXXXXXXXXXXXXXXXXXXXQLKQETTRRKD 163

Query: 191 MDEGDDNWEFYQL 204
           MDEGDDNWEFYQ+
Sbjct: 183 MDEGDDNWEFYQV 163

[Close]
BLAST of Carg06774 vs. NCBI nr
Match: XP_022994169.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-18
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 71  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKR 123
           ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKR
Sbjct: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKR 114

[Close]
BLAST of Carg06774 vs. NCBI nr
Match: XP_004152510.2 (PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus] >KGN64376.1 hypothetical protein Csa_1G050150 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-15
Identity = 66/158 (41.77%), Postives = 82/158 (51.90%), Query Frame = 0 

Query: 46  AKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGI 105
           +KL RL A  +R +V SSS E     L + NYN+LITV  N+ E+++VN+FRRQVLRAGI
Sbjct: 39  SKLTRLFA--SRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGI 98

Query: 106 LQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFS 165
           LQECKRRRFFENSQAKR                                           
Sbjct: 99  LQECKRRRFFENSQAKRXXXXXXXXXXXXXXXXR-------------------------- 158

Query: 166 TGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL 204
                 +P+S   EQ  Q+T   K+ DE DDNW+FYQ+
Sbjct: 159 ------RPQSITGEQPDQKTPESKNRDEEDDNWDFYQV 162

[Close]
BLAST of Carg06774 vs. NCBI nr
Match: PON45621.1 (Ribosomal protein [Parasponia andersonii])

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-14
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 0 

Query: 58  SSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFEN 117
           ++V   S  +++ +     YNV +  + N+PEE+L+++FRR+V +AG+LQEC+RRRFFEN
Sbjct: 87  AAVVFPSVANSNTLFFKSAYNVQVITEENEPEERLLSRFRREVFKAGVLQECRRRRFFEN 146

Query: 118 SQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRA 177
           S  KRKRKAR++A++NRKR                                    P+S+A
Sbjct: 147 SHDKRKRKARDAARKNRKR-----------------------------------FPQSKA 200

Query: 178 EEQQKQETTR---RKDMDEGDDNWEFYQL 204
           + + KQETT    +KD +E DDNW+ + +
Sbjct: 207 QTKAKQETTSPNGKKDAEEEDDNWDHFDV 200

[Close]
BLAST of Carg06774 vs. TAIR10
Match: AT3G27160.1 (Ribosomal protein S21 family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 51  LAAARTRSSVTSSSPESTS---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQV 110
           +A   T S+ +S S E  S   P L+  N       YNV + V++N+ EE+LVN+FRR+V
Sbjct: 49  MAVEETSSTASSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREV 108

[Close]
BLAST of Carg06774 vs. Swiss-Prot
Match: sp|P82024|RR21_SPIOL (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 6.3e-06
Identity = 21/34 (61.76%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 77  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK 111
           YNV + VD+N+ EE+L+N+FRR+V+RAG++QECK
Sbjct: 84  YNVQVLVDDNENEERLLNRFRREVMRAGVIQECK 117

[Close]
BLAST of Carg06774 vs. TrEMBL
Match: tr|A0A0A0LWJ6|A0A0A0LWJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 66/158 (41.77%), Postives = 82/158 (51.90%), Query Frame = 0 

Query: 46  AKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGI 105
           +KL RL A  +R +V SSS E     L + NYN+LITV  N+ E+++VN+FRRQVLRAGI
Sbjct: 39  SKLTRLFA--SRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGI 98

Query: 106 LQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFS 165
           LQECKRRRFFENSQAKR                                           
Sbjct: 99  LQECKRRRFFENSQAKRXXXXXXXXXXXXXXXXR-------------------------- 158

Query: 166 TGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL 204
                 +P+S   EQ  Q+T   K+ DE DDNW+FYQ+
Sbjct: 159 ------RPQSITGEQPDQKTPESKNRDEEDDNWDFYQV 162

[Close]
BLAST of Carg06774 vs. TrEMBL
Match: tr|A0A2P5BA09|A0A2P5BA09_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_257320 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-14
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 0 

Query: 58  SSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFEN 117
           ++V   S  +++ +     YNV +  + N+PEE+L+++FRR+V +AG+LQEC+RRRFFEN
Sbjct: 87  AAVVFPSVANSNTLFFKSAYNVQVITEENEPEERLLSRFRREVFKAGVLQECRRRRFFEN 146

Query: 118 SQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRA 177
           S  KRKRKAR++A++NRKR                                    P+S+A
Sbjct: 147 SHDKRKRKARDAARKNRKR-----------------------------------FPQSKA 200

Query: 178 EEQQKQETTR---RKDMDEGDDNWEFYQL 204
           + + KQETT    +KD +E DDNW+ + +
Sbjct: 207 QTKAKQETTSPNGKKDAEEEDDNWDHFDV 200

[Close]
BLAST of Carg06774 vs. TrEMBL
Match: tr|A0A0A0LDL7|A0A0A0LDL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = 0 

Query: 77  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR 136
           YNV + VD+N+PEE+L+N+FRR+V+RAG++QECKRRRFFEN+Q  RKRK RE+AKRNR+R
Sbjct: 88  YNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 147

Query: 137 GLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDD 196
                                              +P++R   Q KQ+    K  +  DD
Sbjct: 148 -----------------------------------RPQARFTPQNKQDVPATK-QEADDD 174

Query: 197 NWE 200
           NW+
Sbjct: 208 NWD 174

[Close]
BLAST of Carg06774 vs. TrEMBL
Match: tr|Q8VWX5|Q8VWX5_CUCSA (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = 0 

Query: 77  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR 136
           YNV + VD+N+PEE+L+N+FRR+V+RAG++QECKRRRFFEN+Q  RKRK RE+AKRNR+R
Sbjct: 95  YNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 154

Query: 137 GLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDD 196
                                              +P++R   Q KQ+    K  +  DD
Sbjct: 155 -----------------------------------RPQARFTPQNKQDVPATK-QEADDD 181

Query: 197 NWE 200
           NW+
Sbjct: 215 NWD 181

[Close]
BLAST of Carg06774 vs. TrEMBL
Match: tr|A0A1S3BNG4|A0A1S3BNG4_CUCME (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = 0 

Query: 77  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR 136
           YNV + VD+N+PEE+L+N+FRR+V+RAG++QECKRRRFFEN+Q  RKRK RE+AKRNR+R
Sbjct: 136 YNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 195

Query: 137 GLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDD 196
                                              +P++R   Q KQ+    K  +  DD
Sbjct: 196 -----------------------------------RPQARFTPQNKQDVPATK-QEADDD 222

Query: 197 NWE 200
           NW+
Sbjct: 256 NWD 222

The following BLAST results are available for this feature:
BLAST of Carg06774 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022954830.15.0e-3663.4630S ribosomal protein S21, chloroplastic-like [Cucurbita moschata][more]
XP_023542788.17.5e-2456.3930S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022994169.12.8e-18100.0030S ribosomal protein S21, chloroplastic-like [Cucurbita maxima][more]
XP_004152510.24.9e-1541.77PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus] >KGN64376.1 hy... [more]
PON45621.15.4e-1436.91Ribosomal protein [Parasponia andersonii][more]
BLAST of Carg06774 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27160.11.3e-0642.86Ribosomal protein S21 family protein[more]
BLAST of Carg06774 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P82024|RR21_SPIOL6.3e-0661.7630S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P... [more]
BLAST of Carg06774 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWJ6|A0A0A0LWJ6_CUCSA3.2e-1541.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1[more]
tr|A0A2P5BA09|A0A2P5BA09_PARAD3.6e-1436.91Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_257320 PE=3 SV=... [more]
tr|A0A0A0LDL7|A0A0A0LDL7_CUCSA1.0e-1342.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1[more]
tr|Q8VWX5|Q8VWX5_CUCSA1.0e-1342.28Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1[more]
tr|A0A1S3BNG4|A0A1S3BNG4_CUCME1.4e-1342.28uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_S21
IPR038380S21_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06774-RACarg06774-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038380Ribosomal protein S21 superfamilyGENE3DG3DSA:1.20.5.1150coord: 94..131
e-value: 8.5E-7
score: 30.2
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 80..136
e-value: 9.8E-13
score: 45.7
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 81..134
e-value: 2.1E-14
score: 52.8
IPR001911Ribosomal protein S21PANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 48..136
IPR001911Ribosomal protein S21PRODOMPD005521coord: 95..119
e-value: 4.0E-4
score: 104.0
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 78..134
score: 12.147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..192
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..192
NoneNo IPR availablePANTHERPTHR21109:SF6PLASTID RIBOSOMAL PROTEIN S21coord: 48..136

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06774Cla002589Watermelon (97103) v1carwmB0489
Carg06774Csa1G050150Cucumber (Chinese Long) v2carcuB0523
Carg06774MELO3C002333Melon (DHL92) v3.5.1carmeB0499
Carg06774ClCG03G003500Watermelon (Charleston Gray)carwcgB0480
Carg06774CSPI01G09200Wild cucumber (PI 183967)carcpiB0531
Carg06774Cucsa.391760Cucumber (Gy14) v1carcgyB0571
Carg06774CmaCh18G002140Cucurbita maxima (Rimu)carcmaB0692
Carg06774CmoCh18G001900Cucurbita moschata (Rifu)carcmoB0673
Carg06774Lsi02G004730Bottle gourd (USVL1VR-Ls)carlsiB447
Carg06774Cp4.1LG09g09840Cucurbita pepo (Zucchini)carcpeB0694
Carg06774CsGy1G009220Cucumber (Gy14) v2carcgybB0500
Carg06774MELO3C002333.2Melon (DHL92) v3.6.1carmedB0504
Carg06774CsaV3_1G009300Cucumber (Chinese Long) v3carcucB0529
Carg06774Cla97C03G054570Watermelon (97103) v2carwmbB0517
Carg06774Bhi08G001383Wax gourdcarwgoB0601
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06774Watermelon (Charleston Gray)carwcgB0483
Carg06774Watermelon (97103) v1carwmB0495
Carg06774Watermelon (97103) v2carwmbB0521
Carg06774Silver-seed gourdcarcarB390
Carg06774Silver-seed gourdcarcarB481
Carg06774Silver-seed gourdcarcarB484
Carg06774Cucurbita maxima (Rimu)carcmaB0686
Carg06774Cucurbita maxima (Rimu)carcmaB0688
Carg06774Cucurbita maxima (Rimu)carcmaB0689
Carg06774Cucurbita moschata (Rifu)carcmoB0668
Carg06774Cucurbita moschata (Rifu)carcmoB0669
Carg06774Cucurbita moschata (Rifu)carcmoB0670
Carg06774Cucurbita pepo (Zucchini)carcpeB0695
Carg06774Cucurbita pepo (Zucchini)carcpeB0698
Carg06774Cucurbita pepo (Zucchini)carcpeB0699