CsGy1G009220 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G009220
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description30S ribosomal protein S21
LocationChr1 : 5759319 .. 5760636 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGGTTAGTTGATCTCATTTCTAAATCAAAATCAGATGAGTTGTTCATGGCTGAATTTGGTTTCTGTGAGATTTTGTTGTTTTTGAATGGTCTGCTTTCTTTCATTTTCTTTGCAACCAAATAGTGTATTTCGATATCAACTTCTTAACTGTCTCCCTCTGTCAAATGCTGAATACAAATCTTGTGGTTCATTGATCCACGACCACCACTATTGTTCTTCTTGATTTCATTTTCCCCTCTTCCTTTTTAAATCTTCCTTAACATTTTCTAGAACTCAGAAGCCAGCTTCAGATTGATCAATATCAATTAACATTTTCTAGAACTCAGAAGCCAGCTTCAGATTGATCAATATCAATTCAAAGAATTAGTCTACTCAAAATTTCTTCCATTTTAGTGGGAGAGAGGGAAACAGGGGATAGTGAAGATTGTTCAATTGCAGGTTGAAGCTTGAGTAAAAGTTATCATAAAAAAGGGAAACTAGAGGTTGAAAATATCTGAAATTAGCTGTGAAGAAACAGCTATAACTGAAAGATGCTGCTTAGTTACAATACAAGGTGACCCATGATTAGCATTGAGGTTATTGGTAAAGAAGGTCACTTCTTGCGGGTTGTGTTGCTTGCTGCAAACATCCCAAATTGTTGTGACTTGATTGAATCTGTCTCAACTCTCCTTGGGTTCTGTGTTTTAAAAAAAATGAAGAATGGGAAAAATGTAGATTATCATTCAGCTCATTCTCATTGTAGATTCAGATTTTTGTGTTTCCATGTTTTAATGCAAGCAATGGTTTAAAGTATATGTGATTCTCCAACTGCAGAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

mRNA sequence

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGGTTAGTTGATCTCATTTCTAAATCAAAATCAGATGAGTTGTTCATGGCTGAATTTGGTTTCTGTGAGATTTTAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

Coding sequence (CDS)

ATGGCCGCCGCTGCAACTTCGTCTATCACGAATTTCTTCTCCTTCCTCTCCATCTCGAAATCATCACAAATACATCATAACTCCGTCTCTATAAACCTCCAGTCTCTTCCAAATTCTAAACTGACTCGGTTGTTTGCCTCCAGGGGCAATGTTGCATCTTCTTCCCAAGAACCTAAGGGTGTTCCCTTACGCATTTTAAATTATAATATTCTGATCACCGTGGGTGAGAACGAGTCTGAAGACCAGGTGGTGAATCGGTTTAGGAGACAGGTCTTGAGAGCAGGAATTTTGCAGGAGTGTAAGAGGAGAAGATTTTTCGAAAATAGCCAGGCGAAGAGAAAGAGGAAAGCTAGGGAAGCTGCTAAGAGGAATCGCAAGAGGTTAGTTGATCTCATTTCTAAATCAAAATCAGATGAGTTGTTCATGGCTGAATTTGGTTTCTGTGAGATTTTAAGGTTTAGGAGGCCTCAATCAATAACTGGGGAGCAGCCAGACCAGAAAACCCCTGAGAGTAAGAACAGAGATGAGGAAGATGACAACTGGGACTTTTACCAAGTAGACCTTCCATACAGTCCATAA

Protein sequence

MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRLVDLISKSKSDELFMAEFGFCEILRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPYSP
Homology
[Close]
BLAST of CsGy1G009220 vs. NCBI nr
Match: XP_004152510.2 (PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus] >KGN64376.1 hypothetical protein Csa_1G050150 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-69
Identity = 152/192 (79.17%), Postives = 152/192 (79.17%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKR       
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKR------- 120

Query: 121 AKRNRKRLVDLISKSKSDELFMAEFGFCEILRFRRPQSITGEQPDQKTPESKNRDEEDDN 180
                                            RRPQSITGEQPDQKTPESKNRDEEDDN
Sbjct: 121 -----------------XXXXXXXXXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDN 168

Query: 181 WDFYQVDLPYSP 193
           WDFYQVDLPYSP
Sbjct: 181 WDFYQVDLPYSP 168

[Close]
BLAST of CsGy1G009220 vs. NCBI nr
Match: XP_008439325.1 (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 structural constituent of ribosome [Cucumis melo subsp. melo])

HSP 1 Score: 188.0 bits (476), Expect = 3.1e-44
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFEN 109
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFEN
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFEN 108

[Close]
BLAST of CsGy1G009220 vs. NCBI nr
Match: XP_022954830.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 89/189 (47.09%), Postives = 104/189 (55.03%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFA--SRGNVASSSQEPKGV 63
           AAT+S+T FFSFLSISK S  H  SVS+N QS     L RL A  +R +V SSS E    
Sbjct: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSHTKPNLARLAAARTRSSVTSSSPESTSP 62

Query: 64  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKR        
Sbjct: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRXXXXXXXX 122

Query: 124 KRNRKRLVDLISKSKSDELFMAEFGFCEILRFRRPQSITGEQPDQKTPESKNRDEEDDNW 183
                                                   EQ  Q+    K+ DE DDNW
Sbjct: 123 XXXXXXXXXXXXXXXE------------------------EQQKQEITRRKDMDEGDDNW 167

Query: 184 DFYQVDLPY 191
           +FYQVDLPY
Sbjct: 183 EFYQVDLPY 167

[Close]
BLAST of CsGy1G009220 vs. NCBI nr
Match: XP_023542788.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 82/189 (43.39%), Postives = 96/189 (50.79%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSL--PNSKLTRLFASRGNVASSSQEPKGV 63
           AAT+S+T FFSFLSISK S  H  SVS+N QSL  P                        
Sbjct: 3   AATTSLTEFFSFLSISKPSTPHLESVSLNFQSLTKPKXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  PLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKRK       
Sbjct: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKXXXXXXX 122

Query: 124 KRNRKRLVDLISKSKSDELFMAEFGFCEILRFRRPQSITGEQPDQKTPESKNRDEEDDNW 183
                            +L                         Q+T   K+ DE DDNW
Sbjct: 123 XXXXXXXXXXXXXXXXXQL------------------------KQETTRRKDMDEGDDNW 167

Query: 184 DFYQVDLPY 191
           +FYQVDLPY
Sbjct: 183 EFYQVDLPY 167

[Close]
BLAST of CsGy1G009220 vs. NCBI nr
Match: XP_022994169.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 3.1e-20
Identity = 77/189 (40.74%), Postives = 89/189 (47.09%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKGVP- 63
           AAT+S+T FFSFLSISK S  H  SVS+N QSL  +K                       
Sbjct: 3   AATTSLTEFFSFLSISKPSTPHRESVSLNFQSLTKAKXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  -LRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAA 123
            L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKR        
Sbjct: 63  ILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKR-------- 122

Query: 124 KRNRKRLVDLISKSKSDELFMAEFGFCEILRFRRPQSITGEQPDQKTPESKNRDEEDDNW 183
                                                                 EE+DNW
Sbjct: 123 ----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEDNW 167

Query: 184 DFYQVDLPY 191
           DFYQVDLPY
Sbjct: 183 DFYQVDLPY 167

[Close]
BLAST of CsGy1G009220 vs. TAIR10
Match: AT3G27160.1 (Ribosomal protein S21 family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-07
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = 0 

Query: 4   AATSSITNFFSFLSISKS-----------------SQIHHNSVSINLQSL--PNSKLTRL 63
           AA+ S+T+F SF+S  KS                 SQ   N ++I   ++   +S  + L
Sbjct: 2   AASFSLTSFISFISPFKSQTKPTPPPNLTLPSPTISQRRRNDLAIESMAVEETSSTASSL 61

Query: 64  FASRGNVASSSQEPKGVPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECK 102
            +   +V   S            YN+ + V +NESE+++VNRFRR+V+R G++QECK
Sbjct: 62  SSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECK 118

[Close]
BLAST of CsGy1G009220 vs. Swiss-Prot
Match: sp|Q7NHA1|RS212_GLOVI (30S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain PCC 7421) OX=251221 GN=rpsU2 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.3e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNR 126
           + +GENES +  + RF++++ +AGIL E KRR  +E   A+RKRKA  A KR R
Sbjct: 4   VRLGENESIESALKRFKKKIQKAGILSEIKRRERYEKPSARRKRKAEAARKRRR 57

[Close]
BLAST of CsGy1G009220 vs. Swiss-Prot
Match: sp|Q2JM43|RS21_SYNJB (30S ribosomal protein S21 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rpsU PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.3e-05
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 128
           +T+GENE  +  + RF+RQV +AGIL++ +  R FE +  KRKRKA  A +RNR++
Sbjct: 4   VTIGENEGIESALRRFKRQVSKAGILRDLRNHRHFETNLEKRKRKA-VAVRRNRRK 58

[Close]
BLAST of CsGy1G009220 vs. Swiss-Prot
Match: sp|Q2JXR2|RS21_SYNJA (30S ribosomal protein S21 OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rpsU PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.3e-05
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 128
           +T+GENE  +  + RF+RQV +AGIL++ +  R FE +  KRKRKA  A +RNR++
Sbjct: 4   VTIGENEGIESALRRFKRQVSKAGILRDLRNHRHFETNLEKRKRKA-VAMRRNRRK 58

[Close]
BLAST of CsGy1G009220 vs. Swiss-Prot
Match: sp|B0KA63|RS21_THEP3 (30S ribosomal protein S21 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=rpsU PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.3e-05
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK 127
           + VGENES D  + RFRRQ  +AG+L E ++R  +E+   KRK+K+  A KR  K
Sbjct: 4   VRVGENESLDNALRRFRRQCSKAGVLSEVRKREHYESPSVKRKKKSEAARKRKYK 58

[Close]
BLAST of CsGy1G009220 vs. Swiss-Prot
Match: sp|B0K6Z9|RS21_THEPX (30S ribosomal protein S21 OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=rpsU PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.3e-05
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 72  ITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRK 127
           + VGENES D  + RFRRQ  +AG+L E ++R  +E+   KRK+K+  A KR  K
Sbjct: 4   VRVGENESLDNALRRFRRQCSKAGVLSEVRKREHYESPSVKRKKKSEAARKRKYK 58

[Close]
BLAST of CsGy1G009220 vs. TrEMBL
Match: tr|A0A0A0LWJ6|A0A0A0LWJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.4e-69
Identity = 152/192 (79.17%), Postives = 152/192 (79.17%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREA 120
           VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKR       
Sbjct: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKR------- 120

Query: 121 AKRNRKRLVDLISKSKSDELFMAEFGFCEILRFRRPQSITGEQPDQKTPESKNRDEEDDN 180
                                            RRPQSITGEQPDQKTPESKNRDEEDDN
Sbjct: 121 -----------------XXXXXXXXXXXXXXXXRRPQSITGEQPDQKTPESKNRDEEDDN 168

Query: 181 WDFYQVDLPYSP 193
           WDFYQVDLPYSP
Sbjct: 181 WDFYQVDLPYSP 168

[Close]
BLAST of CsGy1G009220 vs. TrEMBL
Match: tr|A0A1S3AZ70|A0A1S3AZ70_CUCME (uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFEN 109
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFEN
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFEN 108

[Close]
BLAST of CsGy1G009220 vs. TrEMBL
Match: tr|E5GBW8|E5GBW8_CUCME (Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60
           MAAAATSSITNFFSFLSISKSSQIHHNSVSIN QSLP SK TRLFASRGNVASSSQEPKG
Sbjct: 1   MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61  VPLRILNYNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFEN 109
           V  RILNYN+LITVGENESEDQVVNRFR QVLRAGILQECKRRRFFEN
Sbjct: 61  VSSRILNYNVLITVGENESEDQVVNRFRTQVLRAGILQECKRRRFFEN 108

[Close]
BLAST of CsGy1G009220 vs. TrEMBL
Match: tr|A0A2P4IVT9|A0A2P4IVT9_QUESU (Telomere length regulation protein tel2 like OS=Quercus suber OX=58331 GN=CFP56_18638 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 58/120 (48.33%), Postives = 75/120 (62.50%), Query Frame = 0 

Query: 71   LITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKRLVD 130
            ++ VGENE ED++V RFRR+VLRAG++QECKRRR+FEN+  K+KRKAR+AA+RNRK    
Sbjct: 935  IVIVGENEPEDKLVGRFRREVLRAGVIQECKRRRYFENTHDKKKRKARDAARRNRK---- 994

Query: 131  LISKSKSDELFMAEFGFCEILRFRRPQSITGEQPDQKTPESKNRDEEDDNWDFYQVDLPY 190
                                    RP  +   Q  Q+ P+ KN D +DDNWD Y+VDLPY
Sbjct: 995  -----------------------WRP--LPKVQAKQEAPKKKNGD-KDDNWDDYEVDLPY 1024

[Close]
BLAST of CsGy1G009220 vs. TrEMBL
Match: tr|A0A2P5BA09|A0A2P5BA09_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_257320 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 55/126 (43.65%), Postives = 75/126 (59.52%), Query Frame = 0 

Query: 68  YNILITVGENESEDQVVNRFRRQVLRAGILQECKRRRFFENSQAKRKRKAREAAKRNRKR 127
           YN+ +   ENE E+++++RFRR+V +AG+LQEC+RRRFFENS  KRKRKAR+AA++NRKR
Sbjct: 106 YNVQVITEENEPEERLLSRFRREVFKAGVLQECRRRRFFENSHDKRKRKARDAARKNRKR 165

Query: 128 LVDLISKSKSDELFMAEFGFCEILRFRRPQSITGEQPDQKTPE---SKNRDEEDDNWDFY 187
                                       PQS    +  Q+T      K+ +EEDDNWD +
Sbjct: 166 F---------------------------PQSKAQTKAKQETTSPNGKKDAEEEDDNWDHF 204

Query: 188 QVDLPY 191
            V+LPY
Sbjct: 226 DVELPY 204

The following BLAST results are available for this feature:
BLAST of CsGy1G009220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152510.22.1e-6979.17PREDICTED: uncharacterized protein LOC101211863 [Cucumis sativus] >KGN64376.1 hy... [more]
XP_008439325.13.1e-4493.52PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 struc... [more]
XP_022954830.14.5e-2747.0930S ribosomal protein S21, chloroplastic-like [Cucurbita moschata][more]
XP_023542788.11.5e-2243.3930S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022994169.13.1e-2040.7430S ribosomal protein S21, chloroplastic-like [Cucurbita maxima][more]
BLAST of CsGy1G009220 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G27160.13.7e-0732.48Ribosomal protein S21 family protein[more]
BLAST of CsGy1G009220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7NHA1|RS212_GLOVI3.3e-0548.1530S ribosomal protein S21 2 OS=Gloeobacter violaceus (strain PCC 7421) OX=251221... [more]
sp|Q2JM43|RS21_SYNJB3.3e-0548.2130S ribosomal protein S21 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32133... [more]
sp|Q2JXR2|RS21_SYNJA4.3e-0548.2130S ribosomal protein S21 OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rp... [more]
sp|B0KA63|RS21_THEP34.3e-0547.2730S ribosomal protein S21 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33... [more]
sp|B0K6Z9|RS21_THEPX4.3e-0547.2730S ribosomal protein S21 OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=r... [more]
BLAST of CsGy1G009220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWJ6|A0A0A0LWJ6_CUCSA1.4e-6979.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1[more]
tr|A0A1S3AZ70|A0A1S3AZ70_CUCME2.0e-4493.52uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=... [more]
tr|E5GBW8|E5GBW8_CUCME2.0e-4493.52Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV... [more]
tr|A0A2P4IVT9|A0A2P4IVT9_QUESU1.4e-1648.33Telomere length regulation protein tel2 like OS=Quercus suber OX=58331 GN=CFP56_... [more]
tr|A0A2P5BA09|A0A2P5BA09_PARAD4.0e-1643.65Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_257320 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR038380S21_sf
IPR001911Ribosomal_S21
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G009220.1CsGy1G009220.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 105..115
score: 42.42
coord: 81..90
score: 35.0
coord: 93..103
score: 44.7
coord: 73..81
score: 47.22
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 72..125
e-value: 2.9E-16
score: 58.8
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 72..127
e-value: 8.4E-15
score: 52.3
IPR001911Ribosomal protein S21PANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 67..128
IPR001911Ribosomal protein S21PRODOMPD005521coord: 86..110
e-value: 0.001
score: 98.0
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 69..125
score: 14.633
IPR038380Ribosomal protein S21 superfamilyGENE3DG3DSA:1.20.5.1150coord: 84..122
e-value: 4.0E-8
score: 34.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..192
NoneNo IPR availablePANTHERPTHR21109:SF6PLASTID RIBOSOMAL PROTEIN S21coord: 67..128

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G009220Cla002589Watermelon (97103) v1cgybwmB010
CsGy1G009220Csa1G050150Cucumber (Chinese Long) v2cgybcuB001
CsGy1G009220MELO3C002333Melon (DHL92) v3.5.1cgybmeB022
CsGy1G009220ClCG03G003500Watermelon (Charleston Gray)cgybwcgB033
CsGy1G009220CSPI01G09200Wild cucumber (PI 183967)cgybcpiB001
CsGy1G009220CmaCh18G002140Cucurbita maxima (Rimu)cgybcmaB085
CsGy1G009220CmoCh18G001900Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G009220Lsi02G004730Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G009220Cp4.1LG09g09840Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G009220MELO3C002333.2Melon (DHL92) v3.6.1cgybmedB020
CsGy1G009220CsaV3_1G009300Cucumber (Chinese Long) v3cgybcucB002
CsGy1G009220Cla97C03G054570Watermelon (97103) v2cgybwmbB032
CsGy1G009220Bhi08G001383Wax gourdcgybwgoB027
CsGy1G009220Carg06774Silver-seed gourdcarcgybB0500
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G009220Cucumber (Gy14) v2cgybcgybB005
CsGy1G009220Cucurbita maxima (Rimu)cgybcmaB025
CsGy1G009220Cucurbita maxima (Rimu)cgybcmaB049
CsGy1G009220Cucurbita maxima (Rimu)cgybcmaB063
CsGy1G009220Cucurbita moschata (Rifu)cgybcmoB026
CsGy1G009220Cucurbita moschata (Rifu)cgybcmoB058
CsGy1G009220Cucurbita pepo (Zucchini)cgybcpeB049
CsGy1G009220Cucurbita pepo (Zucchini)cgybcpeB080
CsGy1G009220Cucumber (Chinese Long) v2cgybcuB014
CsGy1G009220Melon (DHL92) v3.5.1cgybmeB046
CsGy1G009220Watermelon (Charleston Gray)cgybwcgB069
CsGy1G009220Watermelon (97103) v1cgybwmB087
CsGy1G009220Wild cucumber (PI 183967)cgybcpiB013
CsGy1G009220Silver-seed gourdcarcgybB0373
CsGy1G009220Silver-seed gourdcarcgybB0989
CsGy1G009220Cucumber (Chinese Long) v3cgybcucB018
CsGy1G009220Watermelon (97103) v2cgybwmbB055
CsGy1G009220Watermelon (97103) v2cgybwmbB070
CsGy1G009220Wax gourdcgybwgoB065