MELO3C023245.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023245.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Coiled-coil domain-containing protein 18, putative isoform 2
Location	chr11 : 502137 .. 503321 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGCATGGCAGCCGGCGATTGGTCCGGTCACGGAAGCTGAAAGCAAGAACCCGATGAAGACAAGAGATTTGGAGGTGACGGTGACACGCACGATGAGAAGCCCACGTGGTTGGAGATCCCCGTCCTTCTCTTGCCACGTGTACACCAATCTAAATGGTTGACAGTCTCCACGTGGCGGAGTTAATTCGCCCATGGATCGGTGCCACATGCCAAGCTGTCAACTCTCCTCCCTCTTCCACTATATATACACATCATACAACCAAAGAGGAACATTTCATTCTCTTTCTCTTTCAAAAGTGAAAAACAGTTGGAAGCCATTTTCCCATCCTTCTTCCTTTCTAGAGCTGTGTTGTTAAAAGAAGATTGAAGAAAAGCTTAGAAAAAGGAGTAATATATTCATTATGGGAAGTATTGATAGAAAATCATCCATTGAAAATGAGCCAAGAACTCTCAAAATGAATCAAATCCAATTTGCAAGAGTAAGTCTCTCTCTCTCTCTTTCTCTTTTTAAAAAAATTTATTTTTCACTATTCTATATTTTTTGCTTTAATTTTTAGATTTAGTGATTGAATTTGGTGTTGTATATAGCTCATCATAATCATGATCAATTTGGATTAATATATATATATTTCAGGAAGCAGCACTTTATGTGTTAAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGTACGTAATTATTATTAAATTAGACACAAATATATATATACAAATTCTTTTTGGTAATTACCAATTTAATTACCCTATTATGATTGAGGTGTGAATAAATGGTGGAAAATAATTCTTGATGCAGGGATTAAAACCAGTGGAATGTAAAGCAATTATTGATGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAAATTGATGAGTTACAACCTTTTTGTCAACTTAGAGATATTGTCTCTGCCCCTTTTTAGTTTTTTTTTTCCTTCTTTTTTTTTTCTTTTGATAAATACACACATGTAAAGGTTTCTGTCTTAATTCTTTTAGTGGAAAGGAGCAAGTTTTAATTTCCATCTATCCTTTCTTAAAAAAAAGAAAAAAAGAAAAAAGAAAAACAATGGTTTAGTAGTAATGTAAATAAGGAGCTTTCAAATGTTGTTATTGGTAGAAATTTTATAAAAAAAGAATATTTAAATCAA

mRNA sequence

TCGGCATGGCAGCCGGCGATTGGTCCGGTCACGGAAGCTGAAAGCAAGAACCCGATGAAGACAAGAGATTTGGAGGTGACGGTGACACGCACGATGAGAAGCCCACGTGGTTGGAGATCCCCGTCCTTCTCTTGCCACGTGTACACCAATCTAAATGGTTGACAGTCTCCACGTGGCGGAGTTAATTCGCCCATGGATCGGTGCCACATGCCAAGCTGTCAACTCTCCTCCCTCTTCCACTATATATACACATCATACAACCAAAGAGGAACATTTCATTCTCTTTCTCTTTCAAAAGTGAAAAACAGTTGGAAGCCATTTTCCCATCCTTCTTCCTTTCTAGAGCTGTGTTGTTAAAAGAAGATTGAAGAAAAGCTTAGAAAAAGGAGTAATATATTCATTATGGGAAGTATTGATAGAAAATCATCCATTGAAAATGAGCCAAGAACTCTCAAAATGAATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGTTAAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTAAAACCAGTGGAATGTAAAGCAATTATTGATGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAAATTGATGAGTTACAACCTTTTTGTCAACTTAGAGATATTGTCTCTGCCCCTTTTTAGTTTTTTTTTTCCTTCTTTTTTTTTTCTTTTGATAAATACACACATGTAAAGGTTTCTGTCTTAATTCTTTTAGTGGAAAGGAGCAAGTTTTAATTTCCATCTATCCTTTCTTAAAAAAAAGAAAAAAAGAAAAAAGAAAAACAATGGTTTAGTAGTAATGTAAATAAGGAGCTTTCAAATGTTGTTATTGGTAGAAATTTTATAAAAAAAGAATATTTAAATCAA

Coding sequence (CDS)

ATGGGAAGTATTGATAGAAAATCATCCATTGAAAATGAGCCAAGAACTCTCAAAATGAATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGTTAAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTAAAACCAGTGGAATGTAAAGCAATTATTGATGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAAATTGATGAGTTACAACCTTTTTGTCAACTTAGAGATATTGTCTCTGCCCCTTTTTAG

Protein sequence

MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDEDKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF

Homology

[Close]

BLAST of MELO3C023245.2 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of MELO3C023245.2 vs. NCBI nr
Match: XP_011649401.1 (PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_2G302230 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 3.9e-37
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NT TIEEAMKIFTEGL+PVECKAI+ E
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIM-E 60

Query: 61 DKDSIMKNWYHDEEIDE-LQPFCQLRDIVSAPF 93
          DKDSI+KNWYHDEEIDE LQPF QLRDIVSAPF
Sbjct: 61 DKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of MELO3C023245.2 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MG +DRKSSIE EPRTLKMNQIQFAREAALYV+NTT++EEA+KIFTEGL+ VECKAI DE
Sbjct: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          D +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61 D-ESIMENWFHEQEADELPPLYQLRDIVTAPF 91

[Close]

BLAST of MELO3C023245.2 vs. NCBI nr
Match: XP_022947894.1 (uncharacterized protein LOC111451648 [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          M  IDRKSSIENEPRTLKM+QIQFAREAALYV+NT++IEEAM+IFTEGL+ VECK I  E
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPI--E 60

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          D+DS M+N  H+EE+DEL  F +L DIVSAPF
Sbjct: 61 DRDSSMQNCCHEEEVDELPSFYRLPDIVSAPF 90

[Close]

BLAST of MELO3C023245.2 vs. NCBI nr
Match: XP_022150869.1 (uncharacterized protein LOC111018915 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 64/92 (69.57%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MG IDRKSSIENEPRTLKM+QIQFAREAALY+LNTTTI+EAM+IFTEGL+ VECKA  D 
Sbjct: 6  MGRIDRKSSIENEPRTLKMHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKATRDR 65

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          + +   K  Y++EE+ +L+P  + RDIVSAPF
Sbjct: 66 NINGRKKQVYYEEELSDLEPLYRFRDIVSAPF 97

[Close]

BLAST of MELO3C023245.2 vs. TAIR10
Match: AT4G33467.1 (unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFT-----EGLKPVECK 60
           M  ++R+SSIE EP TL ++Q++ ARE ALYV+ T T+EEAM IFT     EGL+  E +
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  -AIIDEDKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
                  KD        DE +  + P     DI +APF
Sbjct: 67  GGRCINLKDEXXXXXXXDERMMFMSPHAW--DIHTAPF 102

[Close]

BLAST of MELO3C023245.2 vs. TrEMBL
Match: tr|A0A1S3CDH2|A0A1S3CDH2_CUCME (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.7e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of MELO3C023245.2 vs. TrEMBL
Match: tr|A0A0A0LQ89|A0A0A0LQ89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-37
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NT TIEEAMKIFTEGL+PVECKAI+ E
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIM-E 60

Query: 61 DKDSIMKNWYHDEEIDE-LQPFCQLRDIVSAPF 93
          DKDSI+KNWYHDEEIDE LQPF QLRDIVSAPF
Sbjct: 61 DKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of MELO3C023245.2 vs. TrEMBL
Match: tr|A0A061DJK4|A0A061DJK4_THECC (Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_001473 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.5e-16
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 4   IDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDEDKD 63
           IDRKSSIE+EPRTL +N+IQ AREAA+YV+ T TIEEAM IFTEGL+PV     +  D  
Sbjct: 45  IDRKSSIESEPRTLNINEIQCAREAAMYVVRTRTIEEAMSIFTEGLEPV---VSVARDNI 104

Query: 64  SIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
             M N    + ++EL    ++RD+VSAPF
Sbjct: 105 GTMMNPKDMQYLEELLHLQEIRDVVSAPF 130

[Close]

BLAST of MELO3C023245.2 vs. TrEMBL
Match: tr|A0A1R3GDT9|A0A1R3GDT9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35729 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-15
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 3   SIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDEDK 62
           +IDRKSSIE+EPRTL  +QIQ AREAA+YV++T +IEEAM IFTEGL+PV   A  D   
Sbjct: 12  NIDRKSSIESEPRTLSFHQIQCAREAAMYVVSTRSIEEAMSIFTEGLEPVVSGARADNIG 71

Query: 63  DSIMKNWYHDE--EIDELQPFCQLRDIVSAPF 93
            + M +    +  E++E Q   + RD+VSAPF
Sbjct: 72  TNTMMDSKEMQFLELEEFQQLHEFRDVVSAPF 103

[Close]

BLAST of MELO3C023245.2 vs. TrEMBL
Match: tr|M1CSN4|M1CSN4_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.2e-15
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          M  ++R SSIENEPRTL +NQIQFAR+AALYV+NT  +EEAM+IFTEGL+PV  + + D+
Sbjct: 6  MVPLNRTSSIENEPRTLNLNQIQFARDAALYVINTRGLEEAMRIFTEGLEPVS-QCVHDK 65

Query: 61 DKDSIMKNWYHDEEIDELQPF---CQLRDIVSAPF 93
          ++D +M+  Y DE      P     + RDI +APF
Sbjct: 66 EEDVMME--YADELESLSNPLRINPETRDIATAPF 97

The following BLAST results are available for this feature:

BLAST of MELO3C023245.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460897.1	1.5e-44	100.00	PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo]	[more]
XP_011649401.1	3.9e-37	90.32	PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hy...	[more]
XP_023512402.1	1.9e-31	77.17	uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo]	[more]
XP_022947894.1	1.6e-27	73.91	uncharacterized protein LOC111451648 [Cucurbita moschata]	[more]
XP_022150869.1	3.6e-27	69.57	uncharacterized protein LOC111018915 [Momordica charantia]	[more]

BLAST of MELO3C023245.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33467.1	1.4e-09	41.84	unknown protein	[more]

BLAST of MELO3C023245.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C023245.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CDH2\|A0A1S3CDH2_CUCME	9.7e-45	100.00	uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=...	[more]
tr\|A0A0A0LQ89\|A0A0A0LQ89_CUCSA	2.6e-37	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1	[more]
tr\|A0A061DJK4\|A0A061DJK4_THECC	9.5e-16	56.18	Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theob...	[more]
tr\|A0A1R3GDT9\|A0A1R3GDT9_9ROSI	2.8e-15	54.35	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35729 PE=4 SV=1	[more]
tr\|M1CSN4\|M1CSN4_SOLTU	6.2e-15	53.68	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023245.2.1	MELO3C023245.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	FAMILY NOT NAMED	coord: 4..92
None	No IPR available	PANTHER	PTHR34808:SF2	SUBFAMILY NOT NAMED	coord: 4..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023245.2	Csa2G302230	Cucumber (Chinese Long) v2	cumedB092
MELO3C023245.2	CSPI02G15710	Wild cucumber (PI 183967)	cpimedB092
MELO3C023245.2	CmaCh20G010620	Cucurbita maxima (Rimu)	cmamedB572
MELO3C023245.2	CmoCh20G010700	Cucurbita moschata (Rifu)	cmomedB562
MELO3C023245.2	Lsi10G007250	Bottle gourd (USVL1VR-Ls)	lsimedB058
MELO3C023245.2	Cp4.1LG16g00840	Cucurbita pepo (Zucchini)	cpemedB305
MELO3C023245.2	Cp4.1LG05g10590	Cucurbita pepo (Zucchini)	cpemedB787
MELO3C023245.2	CsGy2G015710	Cucumber (Gy14) v2	cgybmedB081
MELO3C023245.2	Cla007808	Watermelon (97103) v1	medwmB118
MELO3C023245.2	ClCG02G000540	Watermelon (Charleston Gray)	medwcgB089
MELO3C023245.2	Cla97C02G026780	Watermelon (97103) v2	medwmbB088
MELO3C023245.2	Bhi10G001337	Wax gourd	medwgoB134
MELO3C023245.2	Carg24317	Silver-seed gourd	carmedB0726
MELO3C023245.2	CsaV3_2G018270	Cucumber (Chinese Long) v3	cucmedB097

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023245.2	Cucumber (Gy14) v1	cgymedB418
MELO3C023245.2	Cucurbita maxima (Rimu)	cmamedB629
MELO3C023245.2	Cucurbita moschata (Rifu)	cmomedB618
MELO3C023245.2	Cucurbita pepo (Zucchini)	cpemedB312
MELO3C023245.2	Watermelon (97103) v1	medwmB128
MELO3C023245.2	Silver-seed gourd	carmedB1039