Carg24317 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24317
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Coiled-coil domain-containing protein 18, putative isoform 2
Location	Cucurbita_argyrosperma_scaffold_116 : 286156 .. 287822 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCCAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGTAAGTATGGAAGGCTTAATGATTGTGTGTGTGTGTGTGTGTTTTTGGTTTGAGTAAGGCTTTCAGATGAGCAATGGTTTTGTGATGAACTGCAGGAAGCAGCGCTGTACGTGATGAACACAACTAGCATGGAAGAAGCAATCAAGATCTTCACGGAGGTAATATCATACACAAATTCCGCTATCAATCATTAACGGATTCCATATTGGTTGGAGTGGGTAACGAAACATTTTTTATAAGGGTATGAAAATCGCTCCATAATACACGCATTTTAAAATTGTGAGACTGATGACGATACGTAATGGGCCAAAACAGACATATTGCTCTATTAGCATTGAGCTTGGGCTATTACAAATGGTATCTGTGTCAGCGAGGGCTCTCTCTGGCCCATAAGAGGGTGAATTGGTAACGGTACGTAACGGGCCAAAGCGGACACATCTAGGTGGGCTTGGGCTATTACAAATGGTATCTGTGTCAGCGAGGACTCTCTCTGGCCCATAAGAAGGTGAATTGGTAACGGTACGTAACGGGCCAAAGCGGACACATCTAGTTGGGCTGGGGCTATTACAAATGGTATCTGTGTCAGCGAGGTGCTCTCTCTGGCCCCTAAGAGGGTGAATTGTGAGATCCCACATTGGTGGGGAGAGAAACAAAACATTCCTTATAAGGGTGTGAAAATCTCTCCCTAGGTTGGTAGCGGTACGTAACGGGCCAAAGCGGACACATCTAGGTGGGCTTGGGCTATTACAAATGGTTTCAAAGCCAGACAACGAACAGTGTGTCAATGAAGACGCTGACCCTCTAAGGAGGTGGATTGTGAGATCCCATATTCTTTGTAGAGGGAAAACAAAGCATTCCTTATAAGAGTGTGGAAACCTCTCCCTAGTAGATGCCTTCTAAAACCCCGAGGCTGACAAAAGCGGACAATATCTACTAGCGGCGGGCTTGGGCTATTACAAATGGTACCAGAGCCAGACACCGAGTGATGAGCCGGCAAGGACGCTGCTCCCAAAGGGGTGGATTTCGAAATCTCATTCGTTGGGGACGGAAATGAAGCATTCCTTATAAGAGTATGGAAACCTCTCCCTAGTAGACACATTTTAAAACCTTGAGGTTGACAGCGATACATAAGGAGTCAAAGCGGACAATATCTACTAGCGGTGGGTTTGAGCTATTACAAATGGTATCAGAGTCACAGAGTCCATACCGTGTAGTGTACCAGCGAGGATGCTGACCCTCAAAGTGGTGGATTGTGAGATTCCACATTGGTTGGAGAGGGGAACGGAACATTCTTACCTCTCTCTAATAGACACGTTTAAAACTATGAGGCTGACGACGTTACCTAACGGACCAAAACGAACCATATTTACTAGCGGTGAAATGGAGCTATTACCATTACTTTAATATAAAAAATGGAAAAGGGTTATATGATGGCGATGTAGTGGAAAATGCAGGGATTAGAAGCAGTGGAATGCAAAGCAATACGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTTAGAGACATTGTCACTGCCCCTTTTTAG

mRNA sequence

ATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCCAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGAAGCAGCGCTGTACGTGATGAACACAACTAGCATGGAAGAAGCAATCAAGATCTTCACGGAGGGATTAGAAGCAGTGGAATGCAAAGCAATACGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTTAGAGACATTGTCACTGCCCCTTTTTAG

Coding sequence (CDS)

ATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCCAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGAAGCAGCGCTGTACGTGATGAACACAACTAGCATGGAAGAAGCAATCAAGATCTTCACGGAGGGATTAGAAGCAGTGGAATGCAAAGCAATACGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTTAGAGACATTGTCACTGCCCCTTTTTAG

Protein sequence

MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF

Homology

[Close]

BLAST of Carg24317 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 1.0e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60
          MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE
Sbjct: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60

Query: 61 DESIMENWFHEQEADELPPLYQLRDIVTAPF 92
          DESIMENWFHEQEADELPPLYQLRDIVTAPF
Sbjct: 61 DESIMENWFHEQEADELPPLYQLRDIVTAPF 91

[Close]

BLAST of Carg24317 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 9.2e-31
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60
          MG +DRKSSIE EPRTLKMNQIQFAREAALYV+NTT++EEA+KIFTEGL+ VECKAI DE
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 D-ESIMENWFHEQEADELPPLYQLRDIVTAPF 92
          D +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of Carg24317 vs. NCBI nr
Match: XP_011649401.1 (PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_2G302230 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.9e-29
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60
          MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNT ++EEA+KIFTEGL+ VECKAI ++
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 DESIMENWFHEQEADE-LPPLYQLRDIVTAPF 92
           +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of Carg24317 vs. NCBI nr
Match: XP_022947894.1 (uncharacterized protein LOC111451648 [Cucurbita moschata])

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60
          M R+DRKSSIE EPRTLKM+QIQFAREAALYV+NT+S+EEA++IFTEGLEAVECK I D 
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60

Query: 61 DESIMENWFHEQEADELPPLYQLRDIVTAPF 92
          D S M+N  HE+E DELP  Y+L DIV+APF
Sbjct: 61 DSS-MQNCCHEEEVDELPSFYRLPDIVSAPF 90

[Close]

BLAST of Carg24317 vs. NCBI nr
Match: XP_022150869.1 (uncharacterized protein LOC111018915 [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 60/92 (65.22%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60
          MGR+DRKSSIE EPRTLKM+QIQFAREAALY++NTT+++EA++IFTEGLE VECKA RD 
Sbjct: 6  MGRIDRKSSIENEPRTLKMHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKATRDR 65

Query: 61 D-ESIMENWFHEQEADELPPLYQLRDIVTAPF 92
          +     +  ++E+E  +L PLY+ RDIV+APF
Sbjct: 66 NINGRKKQVYYEEELSDLEPLYRFRDIVSAPF 97

[Close]

BLAST of Carg24317 vs. TAIR10
Match: AT4G33467.1 (unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.9e-10
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 1   MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFT-----EGLEAVE-- 60
           M  ++R+SSIETEP TL ++Q++ ARE ALYVM T +MEEA+ IFT     EGL A E  
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  -CKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF 92
             + I  +DE        E+     P  +   DI TAPF
Sbjct: 67  GGRCINLKDEXXXXXXXDERMMFMSPHAW---DIHTAPF 102

[Close]

BLAST of Carg24317 vs. TrEMBL
Match: tr|A0A1S3CDH2|A0A1S3CDH2_CUCME (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.1e-31
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60
          MG +DRKSSIE EPRTLKMNQIQFAREAALYV+NTT++EEA+KIFTEGL+ VECKAI DE
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 D-ESIMENWFHEQEADELPPLYQLRDIVTAPF 92
          D +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of Carg24317 vs. TrEMBL
Match: tr|A0A0A0LQ89|A0A0A0LQ89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.0e-29
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60
          MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNT ++EEA+KIFTEGL+ VECKAI ++
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 DESIMENWFHEQEADE-LPPLYQLRDIVTAPF 92
           +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of Carg24317 vs. TrEMBL
Match: tr|M1CSN4|M1CSN4_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 4  MDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDES 63
          ++R SSIE EPRTL +NQIQFAR+AALYV+NT  +EEA++IFTEGLE V  + + D++E 
Sbjct: 9  LNRTSSIENEPRTLNLNQIQFARDAALYVINTRGLEEAMRIFTEGLEPVS-QCVHDKEED 68

Query: 64 IMENWFHEQEADELPPLY--QLRDIVTAPF 92
          +M  +  E E+   P     + RDI TAPF
Sbjct: 69 VMMEYADELESLSNPLRINPETRDIATAPF 97

[Close]

BLAST of Carg24317 vs. TrEMBL
Match: tr|A0A061DJK4|A0A061DJK4_THECC (Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_001473 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 3   RMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDE 62
           R+DRKSSIE+EPRTL +N+IQ AREAA+YV+ T ++EEA+ IFTEGLE V   ++  ++ 
Sbjct: 44  RIDRKSSIESEPRTLNINEIQCAREAAMYVVRTRTIEEAMSIFTEGLEPV--VSVARDNI 103

Query: 63  SIMENWFHEQEADELPPLYQLRDIVTAPF 92
             M N    Q  +EL  L ++RD+V+APF
Sbjct: 104 GTMMNPKDMQYLEELLHLQEIRDVVSAPF 130

[Close]

BLAST of Carg24317 vs. TrEMBL
Match: tr|K4D4K6|K4D4K6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 4  MDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDES 63
          ++R SSIE EPRTL +NQIQFAR+ ALYV+NT  +EEA++IFTEGLE V  + + D++E 
Sbjct: 9  LNRTSSIENEPRTLNLNQIQFARDTALYVINTRGLEEAMRIFTEGLEPVS-QCVHDKEEV 68

Query: 64 IMENWFHEQEADELP-PLY---QLRDIVTAPF 92
          IME   + +E + L  PL    + RDI TAPF
Sbjct: 69 IME---YAEELENLSNPLRINPETRDIATAPF 96

The following BLAST results are available for this feature:

BLAST of Carg24317 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512402.1	1.0e-42	100.00	uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo]	[more]
XP_008460897.1	9.2e-31	77.17	PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo]	[more]
XP_011649401.1	2.9e-29	72.83	PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hy...	[more]
XP_022947894.1	3.6e-27	73.63	uncharacterized protein LOC111451648 [Cucurbita moschata]	[more]
XP_022150869.1	1.7e-24	65.22	uncharacterized protein LOC111018915 [Momordica charantia]	[more]

BLAST of Carg24317 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33467.1	4.9e-10	44.44	unknown protein	[more]

BLAST of Carg24317 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24317 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CDH2\|A0A1S3CDH2_CUCME	6.1e-31	77.17	uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=...	[more]
tr\|A0A0A0LQ89\|A0A0A0LQ89_CUCSA	2.0e-29	72.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1	[more]
tr\|M1CSN4\|M1CSN4_SOLTU	3.0e-14	53.33	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
tr\|A0A061DJK4\|A0A061DJK4_THECC	2.0e-13	52.81	Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theob...	[more]
tr\|K4D4K6\|K4D4K6_SOLLC	2.0e-13	54.35	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24317-RA	Carg24317-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808:SF2	SUBFAMILY NOT NAMED	coord: 4..91
None	No IPR available	PANTHER	PTHR34808	FAMILY NOT NAMED	coord: 4..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24317	Cla007808	Watermelon (97103) v1	carwmB0716
Carg24317	Csa2G302230	Cucumber (Chinese Long) v2	carcuB0737
Carg24317	MELO3C023245	Melon (DHL92) v3.5.1	carmeB0713
Carg24317	ClCG02G000540	Watermelon (Charleston Gray)	carwcgB0694
Carg24317	CSPI02G15710	Wild cucumber (PI 183967)	carcpiB0753
Carg24317	CmaCh20G010620	Cucurbita maxima (Rimu)	carcmaB1004
Carg24317	CmaCh02G006260	Cucurbita maxima (Rimu)	carcmaB1005
Carg24317	CmoCh20G010700	Cucurbita moschata (Rifu)	carcmoB0977
Carg24317	CmoCh02G006300	Cucurbita moschata (Rifu)	carcmoB0978
Carg24317	Lsi10G007250	Bottle gourd (USVL1VR-Ls)	carlsiB656
Carg24317	Cp4.1LG05g10590	Cucurbita pepo (Zucchini)	carcpeB1011
Carg24317	Cp4.1LG16g00840	Cucurbita pepo (Zucchini)	carcpeB1010
Carg24317	CsGy2G015710	Cucumber (Gy14) v2	carcgybB0715
Carg24317	MELO3C023245.2	Melon (DHL92) v3.6.1	carmedB0726
Carg24317	CsaV3_2G018270	Cucumber (Chinese Long) v3	carcucB0756
Carg24317	Cla97C02G026780	Watermelon (97103) v2	carwmbB0749
Carg24317	Bhi10G001337	Wax gourd	carwgoB0846

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24317	Carg11692	Silver-seed gourd	carcarB589

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24317	Cucumber (Gy14) v1	carcgyB0807