ClCG02G000540 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G000540
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	ST63-2
Location	CG_Chr02 : 592553 .. 593097 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGTAAGTCTAATCTCTATTTTTTGTTTTTTCACTATTTGATTACTTGCTTTAAATTTTATTTTCTCTGGAGAGAAAAGGAAGAGATTTTGTTGAAGAAAAAGATTGAATTAGTGTTATAACTCATTATTAATTATTAGATTTTTCTGATGAATTTGGATAATTATTTCAGGAAGCAGCACTTTATGTGATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGTAAATATTAGCTAGAAATACAAATCTTTTTCTAATTACCAACTTACCCTATGATAGTATTCATGAATTAAATGGTCATGATATGATGTGGAAAATAATGCAGGGATTACAACCAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAG

mRNA sequence

ATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTACAACCAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAG

Coding sequence (CDS)

ATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTACAACCAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAG

Protein sequence

MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDKDSIMENWCHEEEVDELQPLYQLRDIVSAPF

Homology

[Close]

BLAST of ClCG02G000540 vs. TrEMBL
Match: A0A0A0LQ89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.8e-37
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI-ED 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYV+NT TIEEAMKIFTEGLQPVECKAI ED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDSIMENWCHEEEVDE-LQPLYQLRDIVSAPF 91
          KDSI++NW H+EE+DE LQP YQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of ClCG02G000540 vs. TrEMBL
Match: A0A061DJK4_THECC (Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_001473 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-16
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1


Query: 4   IDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDKDSI 63
           IDRKSSIE+EPRTL +++IQ AREAA+YV+ T TIEEAM IFTEGL+PV   A  D    
Sbjct: 45  IDRKSSIESEPRTLNINEIQCAREAAMYVVRTRTIEEAMSIFTEGLEPVVSVA-RDNIGT 104

Query: 64  MENWCHEEEVDELQPLYQLRDIVSAPF 91
           M N    + ++EL  L ++RD+VSAPF
Sbjct: 105 MMNPKDMQYLEELLHLQEIRDVVSAPF 130

[Close]

BLAST of ClCG02G000540 vs. TrEMBL
Match: U5GGT9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06030g PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
          M  I RKSS+E+EPRTL M QIQFAREAALYV+NT +IEEA+ IFTEGL+PV  +   + 
Sbjct: 8  MVRIQRKSSMESEPRTLTMDQIQFAREAALYVVNTRSIEEALSIFTEGLEPVGGR---NG 67

Query: 61 DSIMENWCHEEEVDELQ--PLYQLRDIVSAPF 91
          D + +     + VDEL+   L ++RDI SAPF
Sbjct: 68 DRMKDMSREMQSVDELEQRQLTEIRDIASAPF 96

[Close]

BLAST of ClCG02G000540 vs. TrEMBL
Match: M1CSN4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028663 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-15
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPV-ECKAIED 60
          M  ++R SSIENEPRTL ++QIQFAR+AALYVINT  +EEAM+IFTEGL+PV +C   ++
Sbjct: 6  MVPLNRTSSIENEPRTLNLNQIQFARDAALYVINTRGLEEAMRIFTEGLEPVSQCVHDKE 65

Query: 61 KDSIMENWCHEEEVDEL-QPLY---QLRDIVSAPF 91
          +D +ME   + +E++ L  PL    + RDI +APF
Sbjct: 66 EDVMME---YADELESLSNPLRINPETRDIATAPF 97

[Close]

BLAST of ClCG02G000540 vs. TrEMBL
Match: B9HEJ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03830g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-15
Identity = 53/98 (54.08%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 4   IDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDKDSI 63
           IDRK+SIE EPRTL+M QIQFAREAALYV+NT++IE A+ IFTEG++PV   A  + D+I
Sbjct: 12  IDRKTSIEFEPRTLRMEQIQFAREAALYVLNTSSIEAALSIFTEGVEPVVGVARRNGDAI 71

Query: 64  -----------MENWCHEEEVDELQPLYQLRDIVSAPF 91
                      +EN   +E+ DE   L  +RDI SAPF
Sbjct: 72  NGMEMSKEKQYLEN--EDEDEDEDLQLPGIRDIASAPF 107

[Close]

BLAST of ClCG02G000540 vs. TAIR10
Match: AT4G33467.1 (AT4G33467.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.3e-10
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
           M  ++R+SSIE EP TL + Q++ ARE ALYV+ T T+EEAM IFT+       +A E++
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  DSIMENWCHEEEVDELQPLYQL------RDIVSAPF 91
                N   EE+ D+ +    +       DI +APF
Sbjct: 67  GGRCINLKDEEDDDDYEDERMMFMSPHAWDIHTAPF 102

[Close]

BLAST of ClCG02G000540 vs. NCBI nr
Match: gi|659121948|ref|XP_008460897.1| (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 7.4e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI--E 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NTTTIEEAMKIFTEGL+PVECKAI  E
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DKDSIM+NW H+EE+DELQP  QLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of ClCG02G000540 vs. NCBI nr
Match: gi|778670210|ref|XP_011649401.1| (PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 9.7e-37
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI-ED 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYV+NT TIEEAMKIFTEGLQPVECKAI ED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDSIMENWCHEEEVDE-LQPLYQLRDIVSAPF 91
          KDSI++NW H+EE+DE LQP YQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of ClCG02G000540 vs. NCBI nr
Match: gi|590708804|ref|XP_007048380.1| (Coiled-coil domain-containing protein 18, putative isoform 2, partial [Theobroma cacao])

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1


Query: 4   IDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDKDSI 63
           IDRKSSIE+EPRTL +++IQ AREAA+YV+ T TIEEAM IFTEGL+PV   A  D    
Sbjct: 45  IDRKSSIESEPRTLNINEIQCAREAAMYVVRTRTIEEAMSIFTEGLEPVVSVA-RDNIGT 104

Query: 64  MENWCHEEEVDELQPLYQLRDIVSAPF 91
           M N    + ++EL  L ++RD+VSAPF
Sbjct: 105 MMNPKDMQYLEELLHLQEIRDVVSAPF 130

[Close]

BLAST of ClCG02G000540 vs. NCBI nr
Match: gi|743865997|ref|XP_011032335.1| (PREDICTED: uncharacterized protein LOC105131187 isoform X1 [Populus euphratica])

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-16
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
          M  I RKSSIE+EPRTL M QI FAREAALYV+NT +IEEA+ IFTEGL+PV  +  +  
Sbjct: 8  MVRIQRKSSIESEPRTLTMDQIHFAREAALYVVNTRSIEEALSIFTEGLEPVGGRKGDRM 67

Query: 61 DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
            I       EE+++L+ L ++RDIVSAPF
Sbjct: 68 TDISREIQCVEELEQLR-LTEIRDIVSAPF 96

[Close]

BLAST of ClCG02G000540 vs. NCBI nr
Match: gi|566169757|ref|XP_006382845.1| (hypothetical protein POPTR_0005s06030g [Populus trichocarpa])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIEDK 60
          M  I RKSS+E+EPRTL M QIQFAREAALYV+NT +IEEA+ IFTEGL+PV  +   + 
Sbjct: 8  MVRIQRKSSMESEPRTLTMDQIQFAREAALYVVNTRSIEEALSIFTEGLEPVGGR---NG 67

Query: 61 DSIMENWCHEEEVDELQ--PLYQLRDIVSAPF 91
          D + +     + VDEL+   L ++RDI SAPF
Sbjct: 68 DRMKDMSREMQSVDELEQRQLTEIRDIASAPF 96

The following BLAST results are available for this feature:

BLAST of ClCG02G000540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ89_CUCSA	6.8e-37	89.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302230 PE=4 SV=1	[more]
A0A061DJK4_THECC	1.7e-16	58.62	Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theob...	[more]
U5GGT9_POPTR	1.1e-15	56.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06030g PE=4 SV=1	[more]
M1CSN4_SOLTU	1.9e-15	54.74	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028663 PE=4 SV=1	[more]
B9HEJ9_POPTR	2.5e-15	54.08	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03830g PE=4 SV=1	[more]

BLAST of ClCG02G000540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33467.1	6.3e-10	39.58	unknown protein	[more]

BLAST of ClCG02G000540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121948\|ref\|XP_008460897.1\|	7.4e-37	88.04	PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo]	[more]
gi\|778670210\|ref\|XP_011649401.1\|	9.7e-37	89.13	PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus]	[more]
gi\|590708804\|ref\|XP_007048380.1\|	2.5e-16	58.62	Coiled-coil domain-containing protein 18, putative isoform 2, partial [Theobroma...	[more]
gi\|743865997\|ref\|XP_011032335.1\|	5.5e-16	57.78	PREDICTED: uncharacterized protein LOC105131187 isoform X1 [Populus euphratica]	[more]
gi\|566169757\|ref\|XP_006382845.1\|	1.6e-15	56.52	hypothetical protein POPTR_0005s06030g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G000540.1	ClCG02G000540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	FAMILY NOT NAMED	coord: 1..90 score: 1.6
None	No IPR available	PANTHER	PTHR34808:SF2	SUBFAMILY NOT NAMED	coord: 1..90 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G000540	Csa2G302230	Cucumber (Chinese Long) v2	cuwcgB124
ClCG02G000540	MELO3C023245	Melon (DHL92) v3.5.1	mewcgB091
ClCG02G000540	Cla007808	Watermelon (97103) v1	wcgwmB206
ClCG02G000540	Cla97C02G026780	Watermelon (97103) v2	wcgwmbB138
ClCG02G000540	Bhi10G001337	Wax gourd	wcgwgoB303
ClCG02G000540	CSPI02G15710	Wild cucumber (PI 183967)	cpiwcgB130
ClCG02G000540	CmaCh20G010620	Cucurbita maxima (Rimu)	cmawcgB482
ClCG02G000540	CmaCh02G006260	Cucurbita maxima (Rimu)	cmawcgB544
ClCG02G000540	CmoCh02G006300	Cucurbita moschata (Rifu)	cmowcgB540
ClCG02G000540	CmoCh20G010700	Cucurbita moschata (Rifu)	cmowcgB480
ClCG02G000540	Lsi10G007250	Bottle gourd (USVL1VR-Ls)	lsiwcgB056
ClCG02G000540	Cp4.1LG16g00840	Cucurbita pepo (Zucchini)	cpewcgB268
ClCG02G000540	Cp4.1LG05g10590	Cucurbita pepo (Zucchini)	cpewcgB647
ClCG02G000540	CsGy2G015710	Cucumber (Gy14) v2	cgybwcgB121
ClCG02G000540	MELO3C023245.2	Melon (DHL92) v3.6.1	medwcgB089
ClCG02G000540	Carg11692	Silver-seed gourd	carwcgB1030
ClCG02G000540	Carg24317	Silver-seed gourd	carwcgB0694
ClCG02G000540	CsaV3_2G018270	Cucumber (Chinese Long) v3	cucwcgB139

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G000540	Cucumber (Gy14) v1	cgywcgB440
ClCG02G000540	Cucurbita pepo (Zucchini)	cpewcgB274