Lsi10G007250 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G007250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coiled-coil domain-containing protein 18, putative isoform 2
Location	chr10 : 10100903 .. 10101636 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCTCCTCCTCAAAAGGATCTGTTTAAAAGAAAAACAGTTAGAAGCCATTTTCGATCCGTCGTTTCTAGAGTTGTATGTCTGGACGACTTGTCGGAAAAGAAGATTGAAGAAGAAGGGATAAGGTTGAAGGAAAATAATGGGAAGCATCGATAGAAAATCGTCCATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGTAAGTCTTCTTATTTCTTAATATATAATCTCTATTTTTTGCTTTTCTTTTTTCTTTTCTTATAAATAATAATTGAATTACAAATATTCTTAGCAGAGAGAAAGGGAATTAGATATATTTTTGTTAACGAAATAGATTGAATTTGTGTTGTAACTCATCATTAATGATTAGAATTTTCTGATGAATTTGGATTATAATTTCAGGAAGCAGCACTTTATGTAATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTTACAGAGGTAATATTAGCTAGAAATAAAAATTACAAATTTAACTCGCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATGAATTAAATGGTGATGTCATGTGGAAAATAATGCAGGGATTACAGCCAGTGGAATGTAAAGCAATTCAAGATAAAGATTTAATAATGGAAAATTACTACCATGAGGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAGTCTACC

mRNA sequence

CATTCTCCTCCTCAAAAGGATCTGTTTAAAAGAAAAACAGTTAGAAGCCATTTTCGATCCGTCGTTTCTAGAGTTGTATGTCTGGACGACTTGTCGGAAAAGAAGATTGAAGAAGAAGGGATAAGGTTGAAGGAAAATAATGGGAAGCATCGATAGAAAATCGTCCATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTAATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTTACAGAGGGATTACAGCCAGTGGAATGTAAAGCAATTCAAGATAAAGATTTAATAATGGAAAATTACTACCATGAGGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAGTCTACC

Coding sequence (CDS)

ATGGGAAGCATCGATAGAAAATCGTCCATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTAATAAACACAACCACCATAGAAGAAGCAATGAAGATTTTTACAGAGGGATTACAGCCAGTGGAATGTAAAGCAATTCAAGATAAAGATTTAATAATGGAAAATTACTACCATGAGGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAG

Protein sequence

MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDKDLIMENYYHEEEVDELQPLYQLRDIVSAPF

Homology

[Close]

BLAST of Lsi10G007250 vs. TrEMBL
Match: A0A0A0LQ89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-35
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI-QD 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYV+NT TIEEAMKIFTEGLQPVECKAI +D
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDLIMENYYHEEEVDE-LQPLYQLRDIVSAPF 91
          KD I++N+YH+EE+DE LQP YQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of Lsi10G007250 vs. TrEMBL
Match: A0A061DJK4_THECC (Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_001473 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-16
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 4   IDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDKDLI 63
           IDRKSSIE+EPRTL +++IQ AREAA+YV+ T TIEEAM IFTEGL+PV   A +D    
Sbjct: 45  IDRKSSIESEPRTLNINEIQCAREAAMYVVRTRTIEEAMSIFTEGLEPVVSVA-RDNIGT 104

Query: 64  MENYYHEEEVDELQPLYQLRDIVSAPF 91
           M N    + ++EL  L ++RD+VSAPF
Sbjct: 105 MMNPKDMQYLEELLHLQEIRDVVSAPF 130

[Close]

BLAST of Lsi10G007250 vs. TrEMBL
Match: U5GGT9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06030g PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-15
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDK 60
          M  I RKSS+E+EPRTL M QIQFAREAALYV+NT +IEEA+ IFTEGL+PV     ++ 
Sbjct: 8  MVRIQRKSSMESEPRTLTMDQIQFAREAALYVVNTRSIEEALSIFTEGLEPV---GGRNG 67

Query: 61 DLIMENYYHEEEVDELQ--PLYQLRDIVSAPF 91
          D + +     + VDEL+   L ++RDI SAPF
Sbjct: 68 DRMKDMSREMQSVDELEQRQLTEIRDIASAPF 96

[Close]

BLAST of Lsi10G007250 vs. TrEMBL
Match: M1CSN4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028663 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-15
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPV-ECKAIQD 60
          M  ++R SSIENEPRTL ++QIQFAR+AALYVINT  +EEAM+IFTEGL+PV +C   ++
Sbjct: 6  MVPLNRTSSIENEPRTLNLNQIQFARDAALYVINTRGLEEAMRIFTEGLEPVSQCVHDKE 65

Query: 61 KDLIMENYYHEEEVDELQPLY---QLRDIVSAPF 91
          +D++ME  Y +E      PL    + RDI +APF
Sbjct: 66 EDVMME--YADELESLSNPLRINPETRDIATAPF 97

[Close]

BLAST of Lsi10G007250 vs. TrEMBL
Match: B9HEJ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03830g PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-15
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 4   IDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPV------ECKAI 63
           IDRK+SIE EPRTL+M QIQFAREAALYV+NT++IE A+ IFTEG++PV         AI
Sbjct: 12  IDRKTSIEFEPRTLRMEQIQFAREAALYVLNTSSIEAALSIFTEGVEPVVGVARRNGDAI 71

Query: 64  QDKDLIMENYY---HEEEVDELQPLYQLRDIVSAPF 91
              ++  E  Y    +E+ DE   L  +RDI SAPF
Sbjct: 72  NGMEMSKEKQYLENEDEDEDEDLQLPGIRDIASAPF 107

[Close]

BLAST of Lsi10G007250 vs. TAIR10
Match: AT4G33467.1 (AT4G33467.1 unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.8e-10
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFT-----EGLQPVE-- 60
           M  ++R+SSIE EP TL + Q++ ARE ALYV+ T T+EEAM IFT     EGL+  E  
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  -CKAIQDKDLIMENYYHEEEVDELQPLYQLRDIVSAPF 91
             + I  KD   ++ Y +E +  + P     DI +APF
Sbjct: 67  GGRCINLKDEEDDDDYEDERMMFMSP--HAWDIHTAPF 102

[Close]

BLAST of Lsi10G007250 vs. NCBI nr
Match: gi|659121948|ref|XP_008460897.1| (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-35
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI--Q 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NTTTIEEAMKIFTEGL+PVECKAI  +
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDLIMENYYHEEEVDELQPLYQLRDIVSAPF 91
          DKD IM+N+YH+EE+DELQP  QLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of Lsi10G007250 vs. NCBI nr
Match: gi|778670210|ref|XP_011649401.1| (PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAI-QD 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYV+NT TIEEAMKIFTEGLQPVECKAI +D
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDLIMENYYHEEEVDE-LQPLYQLRDIVSAPF 91
          KD I++N+YH+EE+DE LQP YQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of Lsi10G007250 vs. NCBI nr
Match: gi|590708804|ref|XP_007048380.1| (Coiled-coil domain-containing protein 18, putative isoform 2, partial [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-16
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 4   IDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDKDLI 63
           IDRKSSIE+EPRTL +++IQ AREAA+YV+ T TIEEAM IFTEGL+PV   A +D    
Sbjct: 45  IDRKSSIESEPRTLNINEIQCAREAAMYVVRTRTIEEAMSIFTEGLEPVVSVA-RDNIGT 104

Query: 64  MENYYHEEEVDELQPLYQLRDIVSAPF 91
           M N    + ++EL  L ++RD+VSAPF
Sbjct: 105 MMNPKDMQYLEELLHLQEIRDVVSAPF 130

[Close]

BLAST of Lsi10G007250 vs. NCBI nr
Match: gi|743865997|ref|XP_011032335.1| (PREDICTED: uncharacterized protein LOC105131187 isoform X1 [Populus euphratica])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-15
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDK 60
          M  I RKSSIE+EPRTL M QI FAREAALYV+NT +IEEA+ IFTEGL+PV  +     
Sbjct: 8  MVRIQRKSSIESEPRTLTMDQIHFAREAALYVVNTRSIEEALSIFTEGLEPVGGRKGDRM 67

Query: 61 DLIMENYYHEEEVDELQPLYQLRDIVSAPF 91
            I       EE+++L+ L ++RDIVSAPF
Sbjct: 68 TDISREIQCVEELEQLR-LTEIRDIVSAPF 96

[Close]

BLAST of Lsi10G007250 vs. NCBI nr
Match: gi|566169757|ref|XP_006382845.1| (hypothetical protein POPTR_0005s06030g [Populus trichocarpa])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-15
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDK 60
          M  I RKSS+E+EPRTL M QIQFAREAALYV+NT +IEEA+ IFTEGL+PV     ++ 
Sbjct: 8  MVRIQRKSSMESEPRTLTMDQIQFAREAALYVVNTRSIEEALSIFTEGLEPV---GGRNG 67

Query: 61 DLIMENYYHEEEVDELQ--PLYQLRDIVSAPF 91
          D + +     + VDEL+   L ++RDI SAPF
Sbjct: 68 DRMKDMSREMQSVDELEQRQLTEIRDIASAPF 96

The following BLAST results are available for this feature:

BLAST of Lsi10G007250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G007250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ89_CUCSA	1.7e-35	86.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302230 PE=4 SV=1	[more]
A0A061DJK4_THECC	5.0e-16	58.62	Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theob...	[more]
U5GGT9_POPTR	1.5e-15	56.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06030g PE=4 SV=1	[more]
M1CSN4_SOLTU	1.9e-15	55.32	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028663 PE=4 SV=1	[more]
B9HEJ9_POPTR	4.3e-15	54.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03830g PE=4 SV=1	[more]

BLAST of Lsi10G007250 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33467.1	4.8e-10	42.86	unknown protein	[more]

BLAST of Lsi10G007250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121948\|ref\|XP_008460897.1\|	1.8e-35	85.87	PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo]	[more]
gi\|778670210\|ref\|XP_011649401.1\|	2.4e-35	86.96	PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus]	[more]
gi\|590708804\|ref\|XP_007048380.1\|	7.2e-16	58.62	Coiled-coil domain-containing protein 18, putative isoform 2, partial [Theobroma...	[more]
gi\|743865997\|ref\|XP_011032335.1\|	2.1e-15	57.78	PREDICTED: uncharacterized protein LOC105131187 isoform X1 [Populus euphratica]	[more]
gi\|566169757\|ref\|XP_006382845.1\|	2.1e-15	56.52	hypothetical protein POPTR_0005s06030g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G007250.1	Lsi10G007250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	FAMILY NOT NAMED	coord: 1..90 score: 4.2
None	No IPR available	PANTHER	PTHR34808:SF2	SUBFAMILY NOT NAMED	coord: 1..90 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G007250	Csa2G302230	Cucumber (Chinese Long) v2	culsiB093
Lsi10G007250	CSPI02G15710	Wild cucumber (PI 183967)	cpilsiB091
Lsi10G007250	CmaCh02G006260	Cucurbita maxima (Rimu)	cmalsiB542
Lsi10G007250	CmaCh20G010620	Cucurbita maxima (Rimu)	cmalsiB508
Lsi10G007250	CmoCh20G010700	Cucurbita moschata (Rifu)	cmolsiB492
Lsi10G007250	CmoCh02G006300	Cucurbita moschata (Rifu)	cmolsiB527
Lsi10G007250	Cla007808	Watermelon (97103) v1	lsiwmB066
Lsi10G007250	MELO3C023245	Melon (DHL92) v3.5.1	lsimeB056
Lsi10G007250	ClCG02G000540	Watermelon (Charleston Gray)	lsiwcgB056
Lsi10G007250	MELO3C023245.2	Melon (DHL92) v3.6.1	lsimedB058
Lsi10G007250	Cla97C02G026780	Watermelon (97103) v2	lsiwmbB053
Lsi10G007250	Bhi10G001337	Wax gourd	lsiwgoB071
Lsi10G007250	Cp4.1LG05g10590	Cucurbita pepo (Zucchini)	cpelsiB601
Lsi10G007250	Cp4.1LG16g00840	Cucurbita pepo (Zucchini)	cpelsiB222
Lsi10G007250	CsGy2G015710	Cucumber (Gy14) v2	cgyblsiB086
Lsi10G007250	Carg24317	Silver-seed gourd	carlsiB656
Lsi10G007250	Carg11692	Silver-seed gourd	carlsiB962
Lsi10G007250	CsaV3_2G018270	Cucumber (Chinese Long) v3	cuclsiB106

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G007250	Cucumber (Gy14) v1	cgylsiB409