Cp4.1LG16g00840 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g00840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG16 : 1612320 .. 1613916 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCACATGGCAAGCTGCCAAGCTCCATGAACTCCATGTCCATGGGTTACAAAAGGGGTGCTTTTCATTCCCTTGCTTCTCCTCCTACTGGTTCCTCCATTTGCATGGATAAGATAAGGTTGATTGAAGCCATAATAATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCGAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGTAAGTATGGAAGGCTTAATGATTGCGTGTGTGTGTGTGTTTTTGGTTTGAGTAAGGCTTTCAGATGAGCAATGGTTTTGTGATGAACTGCAGGAAGCAGCGCTGTACGTGATGAACACAACTAGCATGGAAGAAGCAATCAAGATCTTCACAGAGGTAATATCATACACAAATTTCGCTATCAATCATTATCAGATTCCATATTAATTGGAGTTGGGTAACGAAACATTCCTTATAAAGGTATGAAAATCGCTCCATAGTACACGCATTTTAAAATCGTGAGACTGATGACGATACGTAACGGGCCAAAGCGGACATGTCGCTCTATTAGTGTTGGGCTTGGGCTATTACAAATGGTATTTGTGCCAACCACGGCTCTCTCTGGCCCCTAAAAGAGTGGATTGTGAGATCCCACGTTAGTTGGAGAGGGGAACAAAGCATTCCTTATAAGAGTGTGAAAATCTCTCCCTAGGTTGGTAGCGGTACGTAACAGGCCAAAGCGGACATATCTAGGTGGGCTTGGGCTATTACAAATGGTTTCAAAGCCAGACAATGGACAGTGTGTCAGTAAGGACGCTGACCCTTTAGGGAGGTGGATTGTGAGATCTCATATTCGTTGTAGAGGGAAAACGAAGCATTTCTTATACGAGTGTGGAAACCTCTCCCTAGTAGACGTATTTTGAAACTGTGAGGCTGACAAAGCGGAAAATATCTACCAGCGGTGAGCTTGGACTATTACAAATGGTATCAGAGCCAGCCACCGAGCTATGAGCTAGCAAGGACGCTGCTCCCAAAGGGGTGGATTTTGAAATCTCATTCGTTGGGGGAGGGAAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTGAAAACCTTGAGGTTGACGGCGATACATAATGAGTCAAAATGGACAATATCTACTAGCGGTGGGTTTGAGGTACTACAAATGGTATCAGAGTCACAGAATCGCATACCGTGTAGTGTGCCAGCGAGGATGTTGACCCTCAAAGTGGTGGATTGTGAGATTCCACGTTGGTTGGAGAGGGGAACGGAACGGAACAGAACATTCTTACCCCTCTCTAATAGACACGTTTTAAAACTGTGAGGCTGATGACGATACCTAACGGACCAAAACAAACAATATTTACTAGCGGTGAAATAGAGCTATTACAATTACTTTAATATAAAAAAATGGAAAAGGGTTATATGATGGTGATGTAGTGGAAATTGCAGGGATTAGAAGCAGTGGAATGCAAAGCAATTCGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTAAGAGACATTGTCACTGCCCCTTTT

mRNA sequence

AGCCACATGGCAAGCTGCCAAGCTCCATGAACTCCATGTCCATGGGTTACAAAAGGGGTGCTTTTCATTCCCTTGCTTCTCCTCCTACTGGTTCCTCCATTTGCATGGATAAGATAAGGTTGATTGAAGCCATAATAATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCGAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGTAAGTATGGAAGGCTTAATGATTGCGTATGAGCAATGGTTTTGTGATGAACTGCAGGAAGCAGCGCTGTACGGATTAGAAGCAGTGGAATGCAAAGCAATTCGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTAAGAGACATTGTCACTGCCCCTTTT

Coding sequence (CDS)

ATGAACTCCATGTCCATGGGTTACAAAAGGGGTGCTTTTCATTCCCTTGCTTCTCCTCCTACTGGTTCCTCCATTTGCATGGATAAGATAAGGTTGATTGAAGCCATAATAATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCGAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGTAAGTATGGAAGGCTTAATGATTGCGTATGAGCAATGGTTTTGTGATGAACTGCAGGAAGCAGCGCTGTACGGATTAGAAGCAGTGGAATGCAAAGCAATTCGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAGCTGATGAGCTTCCACCTCTTTATCAGCTAAGAGACATTGTCACTGCCCCTTTT

Protein sequence

MNSMSMGYKRGAFHSLASPPTGSSICMDKIRLIEAIIMGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
Homology
[Close]
BLAST of Cp4.1LG16g00840 vs. TrEMBL
Match: A0A0A0LQ89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-18
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1 

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MG +DRKSSIE EPRTLKM+QIQFAR   E  +        +E  +    GL+ VECKAI
Sbjct: 1   MGSIDRKSSIENEPRTLKMHQIQFAR---EAALYVMNTATIEEAMKIFTEGLQPVECKAI 60

Query: 98  RDEDESIMENWFHEQEADE-LPPLYQLRDIVTAPF 132
            ++ +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61  MEDKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]
BLAST of Cp4.1LG16g00840 vs. NCBI nr
Match: gi|659121948|ref|XP_008460897.1| (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 1 

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MG +DRKSSIE EPRTLKMNQIQFAR   E  +        +E  +    GL+ VECKAI
Sbjct: 1   MGSIDRKSSIENEPRTLKMNQIQFAR---EAALYVLNTTTIEEAMKIFTEGLKPVECKAI 60

Query: 98  RDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF 132
            DED +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61  IDEDKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]
BLAST of Cp4.1LG16g00840 vs. NCBI nr
Match: gi|778670210|ref|XP_011649401.1| (PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-18
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1 

Query: 38  MGRMDRKSSIETEPRTLKMNQIQFARVSMEGLMIAYEQWFCDELQEAALYGLEAVECKAI 97
           MG +DRKSSIE EPRTLKM+QIQFAR   E  +        +E  +    GL+ VECKAI
Sbjct: 1   MGSIDRKSSIENEPRTLKMHQIQFAR---EAALYVMNTATIEEAMKIFTEGLQPVECKAI 60

Query: 98  RDEDESIMENWFHEQEADE-LPPLYQLRDIVTAPF 132
            ++ +SI++NW+H++E DE L P YQLRDIV+APF
Sbjct: 61  MEDKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g00840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g00840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ89_CUCSA3.5e-1854.74Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302230 PE=4 SV=1[more]
BLAST of Cp4.1LG16g00840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g00840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121948|ref|XP_008460897.1|2.0e-1958.95PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo][more]
gi|778670210|ref|XP_011649401.1|5.0e-1854.74PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00840.1Cp4.1LG16g00840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34808FAMILY NOT NAMEDcoord: 88..131
score: 2.5E-15coord: 21..63
score: 2.5
NoneNo IPR availablePANTHERPTHR34808:SF2SUBFAMILY NOT NAMEDcoord: 88..131
score: 2.5E-15coord: 21..63
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g00840CmaCh20G010620Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g00840CmaCh02G006260Cucurbita maxima (Rimu)cmacpeB623
Cp4.1LG16g00840CmoCh20G010700Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g00840CmoCh02G006300Cucurbita moschata (Rifu)cmocpeB573
Cp4.1LG16g00840Cla007808Watermelon (97103) v1cpewmB288
Cp4.1LG16g00840Csa2G302230Cucumber (Chinese Long) v2cpecuB268
Cp4.1LG16g00840MELO3C023245Melon (DHL92) v3.5.1cpemeB261
Cp4.1LG16g00840ClCG02G000540Watermelon (Charleston Gray)cpewcgB268
Cp4.1LG16g00840CSPI02G15710Wild cucumber (PI 183967)cpecpiB270
Cp4.1LG16g00840Lsi10G007250Bottle gourd (USVL1VR-Ls)cpelsiB222
Cp4.1LG16g00840MELO3C023245.2Melon (DHL92) v3.6.1cpemedB305
Cp4.1LG16g00840CsaV3_2G018270Cucumber (Chinese Long) v3cpecucB0335
Cp4.1LG16g00840Bhi10G001337Wax gourdcpewgoB0359
Cp4.1LG16g00840CsGy2G015710Cucumber (Gy14) v2cgybcpeB194
Cp4.1LG16g00840Carg11692Silver-seed gourdcarcpeB1472
Cp4.1LG16g00840Carg24317Silver-seed gourdcarcpeB1010
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG16g00840Cp4.1LG05g10590Cucurbita pepo (Zucchini)cpecpeB320
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g00840Cucurbita pepo (Zucchini)cpecpeB295
Cp4.1LG16g00840Cucumber (Gy14) v1cgycpeB0665
Cp4.1LG16g00840Watermelon (Charleston Gray)cpewcgB274
Cp4.1LG16g00840Watermelon (97103) v1cpewmB302
Cp4.1LG16g00840Melon (DHL92) v3.5.1cpemeB268
Cp4.1LG16g00840Cucumber (Gy14) v2cgybcpeB199
Cp4.1LG16g00840Melon (DHL92) v3.6.1cpemedB312
Cp4.1LG16g00840Silver-seed gourdcarcpeB1132