MELO3C023245.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023245.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Coiled-coil domain-containing protein 18, putative isoform 2
Location	chr11 : 502137 .. 503321 (+)
Sequence length	906

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGCATGGCAGCCGGCGATTGGTCCGGTCACGGAAGCTGAAAGCAAGAACCCGATGAAGACAAGAGATTTGGAGGTGACGGTGACACGCACGATGAGAAGCCCACGTGGTTGGAGATCCCCGTCCTTCTCTTGCCACGTGTACACCAATCTAAATGGTTGACAGTCTCCACGTGGCGGAGTTAATTCGCCCATGGATCGGTGCCACATGCCAAGCTGTCAACTCTCCTCCCTCTTCCACTATATATACACATCATACAACCAAAGAGGAACATTTCATTCTCTTTCTCTTTCAAAAGTGAAAAACAGTTGGAAGCCATTTTCCCATCCTTCTTCCTTTCTAGAGCTGTGTTGTTAAAAGAAGATTGAAGAAAAGCTTAGAAAAAGGAGTAATATATTCATTATGGGAAGTATTGATAGAAAATCATCCATTGAAAATGAGCCAAGAACTCTCAAAATGAATCAAATCCAATTTGCAAGAGTAAGTCTCTCTCTCTCTCTTTCTCTTTTTAAAAAAATTTATTTTTCACTATTCTATATTTTTTGCTTTAATTTTTAGATTTAGTGATTGAATTTGGTGTTGTATATAGCTCATCATAATCATGATCAATTTGGATTAATATATATATATTTCAGGAAGCAGCACTTTATGTGTTAAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGTACGTAATTATTATTAAATTAGACACAAATATATATATACAAATTCTTTTTGGTAATTACCAATTTAATTACCCTATTATGATTGAGGTGTGAATAAATGGTGGAAAATAATTCTTGATGCAGGGATTAAAACCAGTGGAATGTAAAGCAATTATTGATGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAAATTGATGAGTTACAACCTTTTTGTCAACTTAGAGATATTGTCTCTGCCCCTTTTTAGTTTTTTTTTTCCTTCTTTTTTTTTTCTTTTGATAAATACACACATGTAAAGGTTTCTGTCTTAATTCTTTTAGTGGAAAGGAGCAAGTTTTAATTTCCATCTATCCTTTCTTAAAAAAAAGAAAAAAAGAAAAAAGAAAAACAATGGTTTAGTAGTAATGTAAATAAGGAGCTTTCAAATGTTGTTATTGGTAGAAATTTTATAAAAAAAGAATATTTAAATCAA

mRNA sequence

TCGGCATGGCAGCCGGCGATTGGTCCGGTCACGGAAGCTGAAAGCAAGAACCCGATGAAGACAAGAGATTTGGAGGTGACGGTGACACGCACGATGAGAAGCCCACGTGGTTGGAGATCCCCGTCCTTCTCTTGCCACGTGTACACCAATCTAAATGGTTGACAGTCTCCACGTGGCGGAGTTAATTCGCCCATGGATCGGTGCCACATGCCAAGCTGTCAACTCTCCTCCCTCTTCCACTATATATACACATCATACAACCAAAGAGGAACATTTCATTCTCTTTCTCTTTCAAAAGTGAAAAACAGTTGGAAGCCATTTTCCCATCCTTCTTCCTTTCTAGAGCTGTGTTGTTAAAAGAAGATTGAAGAAAAGCTTAGAAAAAGGAGTAATATATTCATTATGGGAAGTATTGATAGAAAATCATCCATTGAAAATGAGCCAAGAACTCTCAAAATGAATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGTTAAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTAAAACCAGTGGAATGTAAAGCAATTATTGATGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAAATTGATGAGTTACAACCTTTTTGTCAACTTAGAGATATTGTCTCTGCCCCTTTTTAGTTTTTTTTTTCCTTCTTTTTTTTTTCTTTTGATAAATACACACATGTAAAGGTTTCTGTCTTAATTCTTTTAGTGGAAAGGAGCAAGTTTTAATTTCCATCTATCCTTTCTTAAAAAAAAGAAAAAAAGAAAAAAGAAAAACAATGGTTTAGTAGTAATGTAAATAAGGAGCTTTCAAATGTTGTTATTGGTAGAAATTTTATAAAAAAAGAATATTTAAATCAA

Coding sequence (CDS)

ATGGGAAGTATTGATAGAAAATCATCCATTGAAAATGAGCCAAGAACTCTCAAAATGAATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGTTAAACACAACAACAATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTAAAACCAGTGGAATGTAAAGCAATTATTGATGAAGATAAAGATTCAATAATGAAAAATTGGTACCATGATGAAGAAATTGATGAGTTACAACCTTTTTGTCAACTTAGAGATATTGTCTCTGCCCCTTTTTAG

Protein sequence

MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDEDKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF

Homology

[Close]

BLAST of MELO3C023245.2.1 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of MELO3C023245.2.1 vs. NCBI nr
Match: XP_011649401.1 (PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_2G302230 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 3.9e-37
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NT TIEEAMKIFTEGL+PVECKAI+ E
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIM-E 60

Query: 61 DKDSIMKNWYHDEEIDE-LQPFCQLRDIVSAPF 93
          DKDSI+KNWYHDEEIDE LQPF QLRDIVSAPF
Sbjct: 61 DKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of MELO3C023245.2.1 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MG +DRKSSIE EPRTLKMNQIQFAREAALYV+NTT++EEA+KIFTEGL+ VECKAI DE
Sbjct: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          D +SIM+NW+H++E DEL P  QLRDIV+APF
Sbjct: 61 D-ESIMENWFHEQEADELPPLYQLRDIVTAPF 91

[Close]

BLAST of MELO3C023245.2.1 vs. NCBI nr
Match: XP_022947894.1 (uncharacterized protein LOC111451648 [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          M  IDRKSSIENEPRTLKM+QIQFAREAALYV+NT++IEEAM+IFTEGL+ VECK I  E
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPI--E 60

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          D+DS M+N  H+EE+DEL  F +L DIVSAPF
Sbjct: 61 DRDSSMQNCCHEEEVDELPSFYRLPDIVSAPF 90

[Close]

BLAST of MELO3C023245.2.1 vs. NCBI nr
Match: XP_022150869.1 (uncharacterized protein LOC111018915 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 64/92 (69.57%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MG IDRKSSIENEPRTLKM+QIQFAREAALY+LNTTTI+EAM+IFTEGL+ VECKA  D 
Sbjct: 6  MGRIDRKSSIENEPRTLKMHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKATRDR 65

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          + +   K  Y++EE+ +L+P  + RDIVSAPF
Sbjct: 66 NINGRKKQVYYEEELSDLEPLYRFRDIVSAPF 97

[Close]

BLAST of MELO3C023245.2.1 vs. TAIR10
Match: AT4G33467.1 (unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFT-----EGLKPVECK 60
           M  ++R+SSIE EP TL ++Q++ ARE ALYV+ T T+EEAM IFT     EGL+  E +
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  -AIIDEDKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
                  KD        DE +  + P     DI +APF
Sbjct: 67  GGRCINLKDEXXXXXXXDERMMFMSPHAW--DIHTAPF 102

[Close]

BLAST of MELO3C023245.2.1 vs. TrEMBL
Match: tr|A0A1S3CDH2|A0A1S3CDH2_CUCME (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.7e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
          DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of MELO3C023245.2.1 vs. TrEMBL
Match: tr|A0A0A0LQ89|A0A0A0LQ89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-37
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NT TIEEAMKIFTEGL+PVECKAI+ E
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIM-E 60

Query: 61 DKDSIMKNWYHDEEIDE-LQPFCQLRDIVSAPF 93
          DKDSI+KNWYHDEEIDE LQPF QLRDIVSAPF
Sbjct: 61 DKDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of MELO3C023245.2.1 vs. TrEMBL
Match: tr|A0A061DJK4|A0A061DJK4_THECC (Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_001473 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.5e-16
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 4   IDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDEDKD 63
           IDRKSSIE+EPRTL +N+IQ AREAA+YV+ T TIEEAM IFTEGL+PV     +  D  
Sbjct: 45  IDRKSSIESEPRTLNINEIQCAREAAMYVVRTRTIEEAMSIFTEGLEPV---VSVARDNI 104

Query: 64  SIMKNWYHDEEIDELQPFCQLRDIVSAPF 93
             M N    + ++EL    ++RD+VSAPF
Sbjct: 105 GTMMNPKDMQYLEELLHLQEIRDVVSAPF 130

[Close]

BLAST of MELO3C023245.2.1 vs. TrEMBL
Match: tr|A0A1R3GDT9|A0A1R3GDT9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35729 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-15
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 3   SIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDEDK 62
           +IDRKSSIE+EPRTL  +QIQ AREAA+YV++T +IEEAM IFTEGL+PV   A  D   
Sbjct: 12  NIDRKSSIESEPRTLSFHQIQCAREAAMYVVSTRSIEEAMSIFTEGLEPVVSGARADNIG 71

Query: 63  DSIMKNWYHDE--EIDELQPFCQLRDIVSAPF 93
            + M +    +  E++E Q   + RD+VSAPF
Sbjct: 72  TNTMMDSKEMQFLELEEFQQLHEFRDVVSAPF 103

[Close]

BLAST of MELO3C023245.2.1 vs. TrEMBL
Match: tr|M1CSN4|M1CSN4_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.2e-15
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60
          M  ++R SSIENEPRTL +NQIQFAR+AALYV+NT  +EEAM+IFTEGL+PV  + + D+
Sbjct: 6  MVPLNRTSSIENEPRTLNLNQIQFARDAALYVINTRGLEEAMRIFTEGLEPVS-QCVHDK 65

Query: 61 DKDSIMKNWYHDEEIDELQPF---CQLRDIVSAPF 93
          ++D +M+  Y DE      P     + RDI +APF
Sbjct: 66 EEDVMME--YADELESLSNPLRINPETRDIATAPF 97

The following BLAST results are available for this feature:

BLAST of MELO3C023245.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460897.1	1.5e-44	100.00	PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo]	[more]
XP_011649401.1	3.9e-37	90.32	PREDICTED: uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hy...	[more]
XP_023512402.1	1.9e-31	77.17	uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo]	[more]
XP_022947894.1	1.6e-27	73.91	uncharacterized protein LOC111451648 [Cucurbita moschata]	[more]
XP_022150869.1	3.6e-27	69.57	uncharacterized protein LOC111018915 [Momordica charantia]	[more]

BLAST of MELO3C023245.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33467.1	1.4e-09	41.84	unknown protein	[more]

BLAST of MELO3C023245.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C023245.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CDH2\|A0A1S3CDH2_CUCME	9.7e-45	100.00	uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=...	[more]
tr\|A0A0A0LQ89\|A0A0A0LQ89_CUCSA	2.6e-37	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1	[more]
tr\|A0A061DJK4\|A0A061DJK4_THECC	9.5e-16	56.18	Coiled-coil domain-containing protein 18, putative isoform 2 (Fragment) OS=Theob...	[more]
tr\|A0A1R3GDT9\|A0A1R3GDT9_9ROSI	2.8e-15	54.35	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35729 PE=4 SV=1	[more]
tr\|M1CSN4\|M1CSN4_SOLTU	6.2e-15	53.68	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C023245.2	MELO3C023245.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C023245.2.1	MELO3C023245.2.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023245.2.1.five_prime_UTR.1	MELO3C023245.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023245.2.1.exon.1	MELO3C023245.2.1.exon.1	exon
MELO3C023245.2.1.exon.2	MELO3C023245.2.1.exon.2	exon
MELO3C023245.2.1.exon.3	MELO3C023245.2.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023245.2.1.CDS.1	MELO3C023245.2.1.CDS.1	CDS
MELO3C023245.2.1.CDS.2	MELO3C023245.2.1.CDS.2	CDS
MELO3C023245.2.1.CDS.3	MELO3C023245.2.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023245.2.1.three_prime_UTR.1	MELO3C023245.2.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	FAMILY NOT NAMED	coord: 4..92
None	No IPR available	PANTHER	PTHR34808:SF2	SUBFAMILY NOT NAMED	coord: 4..92