MELO3C018508.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C018508.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionE3 ubiquitin-protein ligase RLIM
Locationchr01 : 734207 .. 736728 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTCAATCTGTCCTCTACCGCAAGTAACCAAGCAAATCTCCTCTCCATTACCTTCAACTTCCATCCACATTTCTACGAAATTTCGACTCCATTTCCTCCCAGTTTCAAACCCTTTCCGTTTTTCATTCATTCAAATTCAGATTCTACGCTAAATTTTGAGTGAAAACAAGCATAGAACCGGCTGAGTTTGTGCATGACGAGCGCTTCGGAGCTGTTTTATTGTCGGAGGTACAGATTTGGTCGTACTGACTCTGACTTGGGCCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGGTCACAATGCCAATCACCGCCGCGATTTGAACTCCTGTGGCGATTTCCGCCGTTCCTCGTTGCAAGAACGTCGTCAATCTCCCCGGTTTTTTAACCCTGTAAGAAGGATTAAACAAAATTTGCTAGATTCTGGGCTTATGTTACTTGACAATATATTTTTTTTTTTTTTTACTTCGATGAAGTATATATTAACCGGTTGAGAATAGTTGGAATTGGGAGAACTGTTCATAATTGGTTTCGATTGGGAAATTTTAAGCGTTTCCGACTTAAAATTTCCTCTAAACTGTAGAATCTGTTGGGAATATGTTGAAAATATCAGATTTGCCCTAATTTATCAGCTTAGGTTGTTGGTATGGTTTTATTTGGTTCATGTCCTAAGAATAATGTCATTTGTACTTAGCTATGGATTGATCCAACAAACGACTCTATTGATAACCATTTAGTTTTTTGGCTTTGAAAATTAAGCTTGTTAAAGTTGCTTCCAAGTTCCAACTATGGATTTCTTTGTTTTGTTTATGTTTTCAAAATCCAGGCTTAAAGGAATAGGTTTTAGAAGCTTGTTTTTTTTTTAAAAAAAAAATTGGCTATAGATTCAAATGGTTATCAAATTGATCTCTAGTCAAGCTATTGATTTGATTATTGTTATTCTTCAGTGATAATTCTGTTTTCCATTGCTGTGAAATAATTAGAACCAGAATAAATCAAATTGCAGAAGTTGGTACTGAGAGTGACGATGGATATAACTTTTCAAGTTTTATTAGCTTCTAAATGCTACTTTGCTATTAAACCATGATTTAATTGGTATGTGTTCATGGAGACGTAATTTGGTTAATTAAGAATGCTTTTCTTTATTATTGTTGTTGTTTTTTTTCTGGGTTGTCATCTCTGTCTGAATGTTATCTTCAATTAGTTTGGAGGCATTAACACTATGTTTTCGTTGTAGCTTTCCGTTGATCGATCGCCTGCACAGTCTGACTCAGCTACGAGCGTTGGTTCTAGAAATAATATCAATGGAAATACTCAGAATAGCTTGAGGTCTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGGCTTCTCGAGAGATTGAGAGGTGCCTCTTCTCCAACGAGCAGGTCAGTTCCTATTGTCATGTCTTTGTTTTTCACATCACTATTCAGAAAACTTTTGTGACTTCAATTAGAATGTTCCATGCTATCTCTCTAGTTTTAAGGGCATGTTTGGAAGCAATCTTAAAATTGTTAGAAACACTTTTCTCAGGATCATAATCACTCTGAGACATGTCATCTTTAGTCATTCAAAGTTTCAAAAATCAATTTAATGCTTGATTTCACACGTTTAAACTTGATTTTTATATAATCAAAGTTGATTTTGAATACTTAAAAGAATGCTCGTAAACATATGCTGTGGTATGAATCAATTTGTATGGTTTTCTTTTGTTGATAGGGATTTGGTTTGTATTGTATACTCAGGAAATAGGATCCAATTCTAATAAACTTGTAAAGTTTCAACAAGTTCTGTCCTATACTTTTAAAGATAAATTGTTACTGGGTCACCATCTGAATGTTGAAAGCTAGAATAGATCCCAGCGCTGTAGTGTATTGCTAACCGAATTAGTTTATTCATCAGGAACGCACTTGTCGAAGCATCAAATGGAAATCCAGAAATCTCAACAAGTCGATCGCAGAGGATATCCCTCATCGATGCTGACAGGATGCGATTAGTAGCTGTACCTAGCAAGAGGCCTCCTGGTCTTTCCCAGGATGCAATCAACCGCTTACAACTTGAGGTTTTTATCAATACAGATCGTATCATCGATGACGATGTGATGACAATAACCTCAACAGACTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGATAAGCTCATCCATTTACCTTGTGAGCACAAATTTCACCATGCTTGCTTGGACCGATGGATTAGAACTTGTGGAGAATGCCCATATTGTCGACAACATATCTCACCATCAACCAATATTTTCTAACACGCTTCGCAACTTCGGATTTCATGTCTGTGTAGAAAACTTAGAGACTTTATTATTCGAAGTTGTGGTATTAATCTTTTATACTTCTGTAGTTGATGATGTTCATACTTGTATCCTTTTAAGGTCCTGTATTGACTCCAAATTGTGTGGCAATTTTAATAGCCAAAGAGGTTTGACTGC

mRNA sequence

ACTTCAATCTGTCCTCTACCGCAAGTAACCAAGCAAATCTCCTCTCCATTACCTTCAACTTCCATCCACATTTCTACGAAATTTCGACTCCATTTCCTCCCAGTTTCAAACCCTTTCCGTTTTTCATTCATTCAAATTCAGATTCTACGCTAAATTTTGAGTGAAAACAAGCATAGAACCGGCTGAGTTTGTGCATGACGAGCGCTTCGGAGCTGTTTTATTGTCGGAGGTACAGATTTGGTCGTACTGACTCTGACTTGGGCCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGGTCACAATGCCAATCACCGCCGCGATTTGAACTCCTGTGGCGATTTCCGCCGTTCCTCGTTGCAAGAACGTCGTCAATCTCCCCGGTTTTTTAACCCTCTTTCCGTTGATCGATCGCCTGCACAGTCTGACTCAGCTACGAGCGTTGGTTCTAGAAATAATATCAATGGAAATACTCAGAATAGCTTGAGGTCTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGGCTTCTCGAGAGATTGAGAGGTGCCTCTTCTCCAACGAGCAGGAACGCACTTGTCGAAGCATCAAATGGAAATCCAGAAATCTCAACAAGTCGATCGCAGAGGATATCCCTCATCGATGCTGACAGGATGCGATTAGTAGCTGTACCTAGCAAGAGGCCTCCTGGTCTTTCCCAGGATGCAATCAACCGCTTACAACTTGAGGTTTTTATCAATACAGATCGTATCATCGATGACGATGTGATGACAATAACCTCAACAGACTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGATAAGCTCATCCATTTACCTTGTGAGCACAAATTTCACCATGCTTGCTTGGACCGATGGATTAGAACTTGTGGAGAATGCCCATATTGTCGACAACATATCTCACCATCAACCAATATTTTCTAACACGCTTCGCAACTTCGGATTTCATGTCTGTGTAGAAAACTTAGAGACTTTATTATTCGAAGTTGTGGTATTAATCTTTTATACTTCTGTAGTTGATGATGTTCATACTTGTATCCTTTTAAGGTCCTGTATTGACTCCAAATTGTGTGGCAATTTTAATAGCCAAAGAGGTTTGACTGC

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGCTGTTTTATTGTCGGAGGTACAGATTTGGTCGTACTGACTCTGACTTGGGCCTTGATTCTGAGCCTCCCGATCGGAATCTTCAGTATCAACGCCGTCATCATGGTCACAATGCCAATCACCGCCGCGATTTGAACTCCTGTGGCGATTTCCGCCGTTCCTCGTTGCAAGAACGTCGTCAATCTCCCCGGTTTTTTAACCCTCTTTCCGTTGATCGATCGCCTGCACAGTCTGACTCAGCTACGAGCGTTGGTTCTAGAAATAATATCAATGGAAATACTCAGAATAGCTTGAGGTCTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCTGTTTTACTTGCTAGAGAAAGGCTTCTCGAGAGATTGAGAGGTGCCTCTTCTCCAACGAGCAGGAACGCACTTGTCGAAGCATCAAATGGAAATCCAGAAATCTCAACAAGTCGATCGCAGAGGATATCCCTCATCGATGCTGACAGGATGCGATTAGTAGCTGTACCTAGCAAGAGGCCTCCTGGTCTTTCCCAGGATGCAATCAACCGCTTACAACTTGAGGTTTTTATCAATACAGATCGTATCATCGATGACGATGTGATGACAATAACCTCAACAGACTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGATAAGCTCATCCATTTACCTTGTGAGCACAAATTTCACCATGCTTGCTTGGACCGATGGATTAGAACTTGTGGAGAATGCCCATATTGTCGACAACATATCTCACCATCAACCAATATTTTCTAA

Protein sequence

MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSSLQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHISPSTNIF
Homology
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BLAST of MELO3C018508.2 vs. NCBI nr
Match: XP_008455026.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo])

HSP 1 Score: 524.6 bits (1350), Expect = 1.9e-145
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240

Query: 241 WIRTCGECPYCRQHISPSTNIF 263
           WIRTCGECPYCRQHISPSTNIF
Sbjct: 241 WIRTCGECPYCRQHISPSTNIF 262

[Close]
BLAST of MELO3C018508.2 vs. NCBI nr
Match: XP_004136947.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus] >KGN43862.1 hypothetical protein Csa_7G071510 [Cucumis sativus])

HSP 1 Score: 491.5 bits (1264), Expect = 1.8e-135
Identity = 244/256 (95.31%), Postives = 250/256 (97.66%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFYCRRYRFGRTDSDLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCGDFRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDSATSV SRNNINGNTQNSLRSGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVEASNGNPE +TSRSQRISL+DADRMRLVAVPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           QDAINRLQLEVFINTD II+D VMTITSTDCSICLESFTDGDKLIHLPCEHKFHH CLDR
Sbjct: 181 QDAINRLQLEVFINTDHIINDGVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLDR 240

Query: 241 WIRTCGECPYCRQHIS 257
           WIRTCGECPYCRQHI+
Sbjct: 241 WIRTCGECPYCRQHIA 256

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BLAST of MELO3C018508.2 vs. NCBI nr
Match: XP_022988901.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita maxima])

HSP 1 Score: 406.0 bits (1042), Expect = 9.8e-110
Identity = 207/256 (80.86%), Postives = 223/256 (87.11%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELF+ RRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRR LN+CG FRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQER QSPRF NPL+VDRSPAQS+S  SVGSRNNIN N QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERHQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERL ERLRGASSPT RN LVEA + +PEIS SRSQ ISL DADR+RLV   SKRPPGLS
Sbjct: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
            +AIN LQLE FI+ + IIDDD+ MT TS DCSICL+SF DGDKLIHLPC+HKFHHACL+
Sbjct: 181 LEAINCLQLERFIDIEHIIDDDLTMTTTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240

Query: 241 RWIRTCGECPYCRQHI 256
            WIRTCGECPYCRQHI
Sbjct: 241 PWIRTCGECPYCRQHI 256

[Close]
BLAST of MELO3C018508.2 vs. NCBI nr
Match: XP_023529438.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.0 bits (1042), Expect = 9.8e-110
Identity = 207/256 (80.86%), Postives = 224/256 (87.50%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELF+ RRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRR LN+CG FRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRF NPL+VDRSPAQS+S  SVGSRNNIN N QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERL ERLRGASSPT RN LVEA + +PEIS SRSQ ISL DADR+RLV   SKRPPGLS
Sbjct: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTI-TSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           Q+AIN LQLE FI+ + IIDDD+  I TS DCSICL+SF DGDKLIHLPC+HKFHHACL+
Sbjct: 181 QEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240

Query: 241 RWIRTCGECPYCRQHI 256
           +WIRTCGECPYCRQ I
Sbjct: 241 QWIRTCGECPYCRQRI 256

[Close]
BLAST of MELO3C018508.2 vs. NCBI nr
Match: XP_022148864.1 (probable E3 ubiquitin-protein ligase RHY1A [Momordica charantia])

HSP 1 Score: 399.4 bits (1025), Expect = 9.2e-108
Identity = 201/257 (78.21%), Postives = 226/257 (87.94%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELF+ RRYR+GRTD+DLGLDSEPPDR+L   RRHHGH   HRRDLN+CG FRRSS
Sbjct: 1   MTSASELFHHRRYRWGRTDADLGLDSEPPDRHLPSPRRHHGHTGTHRRDLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGN--TQNSLRSGLSGDSRLPGSVL 120
           LQER QSPRF  PL+ DRS AQSDS TS+GSRN+IN N   +NS R+GLS DSRLPG+VL
Sbjct: 61  LQERHQSPRFSYPLAQDRSAAQSDSVTSLGSRNSINANIHIRNSSRTGLSXDSRLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPG 180
           LARERLLERLRGAS PTSRN L EAS+GNPEISTS+SQRISL+DADR++LV   +KRPPG
Sbjct: 121 LARERLLERLRGASLPTSRNGLTEASDGNPEISTSQSQRISLVDADRLQLVPELNKRPPG 180

Query: 181 LSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACL 240
           LS +A++RLQLEVF+NT+ IIDDD  TITSTDCSICLESFTDGDKLIHLPCEHKFHHACL
Sbjct: 181 LSXEAVDRLQLEVFMNTEHIIDDDPTTITSTDCSICLESFTDGDKLIHLPCEHKFHHACL 240

Query: 241 DRWIRTCGECPYCRQHI 256
           DRW+R+CG+CPYCRQ I
Sbjct: 241 DRWVRSCGDCPYCRQRI 257

[Close]
BLAST of MELO3C018508.2 vs. TAIR10
Match: AT1G49850.1 (RING/U-box superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-31
Identity = 100/265 (37.74%), Postives = 133/265 (50.19%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLD-SEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRS 60
           MTSASELF  RR R GR+D  L  D S                      D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSXXXXXXXXXXXXXXXXXXXXXXDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSATS-VGSRNNINGNTQNSLRSGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGAS-SPTSRNALVEASNGNPEISTSRSQRISLIDAD------RMRLVAV 180
           LAR+RL ERLRG S S  SR+  V        +   R      ID D       +++   
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRV-------SLDDQRESSFHSIDGDPIFQLAGLQVTYE 180

Query: 181 PSKRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEH 240
            +K+P GL+QDAIN L  + F + +       +     DCSICLESFT GD LI LPC H
Sbjct: 181 CNKKPQGLTQDAINCLHRQTFSSAE-------VKSEMRDCSICLESFTKGDMLISLPCTH 240

Query: 241 KFHHACLDRWIRTCGECPYCRQHIS 257
            FH +CL+ W+R CG+CP CR+ I+
Sbjct: 241 SFHSSCLNPWLRACGDCPCCRRAIA 248

[Close]
BLAST of MELO3C018508.2 vs. TAIR10
Match: AT2G15580.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-11
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 210 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 256
           DC+ICL+ F  G+ L+HLPC HKFH  CL  W+ T   CPYCR  I
Sbjct: 149 DCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

[Close]
BLAST of MELO3C018508.2 vs. TAIR10
Match: AT1G12760.1 (Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 210 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHISPSTNI 262
           +C ICL ++ DG +L  LPC H FH +C+D+W+     CP C+ +I  S+N+
Sbjct: 352 ECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNL 403

[Close]
BLAST of MELO3C018508.2 vs. TAIR10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0 

Query: 178 GLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLP-CEHKFHHA 237
           GL Q AI+ L + ++ N    ++         DC++CL  F+D DKL  LP C H FH  
Sbjct: 180 GLDQTAIDALPVFLYGNVTISLEQPF------DCAVCLNEFSDTDKLRLLPVCSHAFHLH 239

Query: 238 CLDRWIRTCGECPYCRQHISPS 259
           C+D W+ +   CP CR+ +S S
Sbjct: 240 CIDTWLLSNSTCPLCRRSLSTS 255

[Close]
BLAST of MELO3C018508.2 vs. TAIR10
Match: AT4G11360.1 (RING-H2 finger A1B)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0 

Query: 202 DVMTITSTDCSICLESFTDGDKLIHLP-CEHKFHHACLDRWIRTCGE--CPYCRQHISP 258
           D++T     C++CL  F   DK+  LP C H FHH CLDRWI  C +  CP CR    P
Sbjct: 76  DLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFLP 134

[Close]
BLAST of MELO3C018508.2 vs. Swiss-Prot
Match: sp|Q852U6|RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-30
Identity = 100/265 (37.74%), Postives = 133/265 (50.19%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLD-SEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRS 60
           MTSASELF  RR R GR+D  L  D S                      D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSXXXXXXXXXXXXXXXXXXXXXXDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSATS-VGSRNNINGNTQNSLRSGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGAS-SPTSRNALVEASNGNPEISTSRSQRISLIDAD------RMRLVAV 180
           LAR+RL ERLRG S S  SR+  V        +   R      ID D       +++   
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRV-------SLDDQRESSFHSIDGDPIFQLAGLQVTYE 180

Query: 181 PSKRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEH 240
            +K+P GL+QDAIN L  + F + +       +     DCSICLESFT GD LI LPC H
Sbjct: 181 CNKKPQGLTQDAINCLHRQTFSSAE-------VKSEMRDCSICLESFTKGDMLISLPCTH 240

Query: 241 KFHHACLDRWIRTCGECPYCRQHIS 257
            FH +CL+ W+R CG+CP CR+ I+
Sbjct: 241 SFHSSCLNPWLRACGDCPCCRRAIA 248

[Close]
BLAST of MELO3C018508.2 vs. Swiss-Prot
Match: sp|Q9NVW2|RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens OX=9606 GN=RLIM PE=1 SV=3)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0 

Query: 175 RPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFH 234
           +P GL+++ I+ L +  F   D +            CS+C+  +T+G+KL  LPC H++H
Sbjct: 544 QPRGLTKEQIDNLAMRSFGENDAL----------KTCSVCITEYTEGNKLRKLPCSHEYH 603

Query: 235 HACLDRWIRTCGECPYCRQHISPSTN 261
             C+DRW+     CP CR+ +  S N
Sbjct: 604 VHCIDRWLSENSTCPICRRAVLASGN 619

[Close]
BLAST of MELO3C018508.2 vs. Swiss-Prot
Match: sp|Q9WTV7|RNF12_MOUSE (E3 ubiquitin-protein ligase RLIM OS=Mus musculus OX=10090 GN=Rlim PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0 

Query: 175 RPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFH 234
           +P GL+++ I+ L +  F   D +            CS+C+  +T+G+KL  LPC H++H
Sbjct: 520 QPRGLTKEQIDNLAMRSFGENDAL----------KTCSVCITEYTEGNKLRKLPCSHEYH 579

Query: 235 HACLDRWIRTCGECPYCRQHISPSTN 261
             C+DRW+     CP CR+ +  S N
Sbjct: 580 VHCIDRWLSENSTCPICRRAVLSSGN 595

[Close]
BLAST of MELO3C018508.2 vs. Swiss-Prot
Match: sp|Q7XLY8|ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-10
Identity = 30/82 (36.59%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 176 PPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLP-CEHKFH 235
           P GL +  IN++ +  +   D  +        +TDCS+CL  F+DG+ L  LP C H FH
Sbjct: 129 PSGLDETLINKITVCKYRRGDGFVH-------TTDCSVCLGEFSDGESLRLLPRCSHAFH 188

Query: 236 HACLDRWIRTCGECPYCRQHIS 257
             C+D W+++   CP CR +I+
Sbjct: 189 QQCIDTWLKSHSNCPLCRANIT 203

[Close]
BLAST of MELO3C018508.2 vs. Swiss-Prot
Match: sp|Q641J8|RF12A_XENLA (E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis OX=8355 GN=rnf12-a PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-10
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 0 

Query: 175 RPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFH 234
           +P GL+++ I+ L    F   D +            CS+C+  +T+G+KL  LPC H++H
Sbjct: 542 QPRGLTKEQIDNLSTRNFGENDAL----------KTCSVCITEYTEGNKLRKLPCSHEYH 601

Query: 235 HACLDRWIRTCGECPYCRQHISPSTN 261
             C+DRW+     CP CR+ +  ++N
Sbjct: 602 IHCIDRWLSENSTCPICRRAVLVASN 617

[Close]
BLAST of MELO3C018508.2 vs. TrEMBL
Match: tr|A0A1S3C156|A0A1S3C156_CUCME (E3 ubiquitin-protein ligase RLIM OS=Cucumis melo OX=3656 GN=LOC103495299 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 1.3e-145
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240

Query: 241 WIRTCGECPYCRQHISPSTNIF 263
           WIRTCGECPYCRQHISPSTNIF
Sbjct: 241 WIRTCGECPYCRQHISPSTNIF 262

[Close]
BLAST of MELO3C018508.2 vs. TrEMBL
Match: tr|A0A0A0K6D2|A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 1.2e-135
Identity = 244/256 (95.31%), Postives = 250/256 (97.66%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFYCRRYRFGRTDSDLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCGDFRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDSATSV SRNNINGNTQNSLRSGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVEASNGNPE +TSRSQRISL+DADRMRLVAVPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           QDAINRLQLEVFINTD II+D VMTITSTDCSICLESFTDGDKLIHLPCEHKFHH CLDR
Sbjct: 181 QDAINRLQLEVFINTDHIINDGVMTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLDR 240

Query: 241 WIRTCGECPYCRQHIS 257
           WIRTCGECPYCRQHI+
Sbjct: 241 WIRTCGECPYCRQHIA 256

[Close]
BLAST of MELO3C018508.2 vs. TrEMBL
Match: tr|A0A061E823|A0A061E823_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.2e-44
Identity = 125/262 (47.71%), Postives = 159/262 (60.69%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFY RR R GR DSD  + S   DRN  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSS-IDRN--YNRRHHLGHHNHRHDVDGCDHLRRS- 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNN-INGN-TQNSLRSGLSGDSRLPGSVL 120
               RQ     +  S +RS  + D  TS    +N +N +   +S R  L+ + RLPG+VL
Sbjct: 61  -PHVRQFSSRASSQSQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRIS-----LIDADRMRLVAVPS 180
           LAR RLLERLRG S   S N LV+A +   EIST  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVS--VSTNRLVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKF 240
           K+PPGL+Q+A++ L LEVF ++  +  D  ++  S DCSICLESF D D L  LPC H+F
Sbjct: 181 KKPPGLTQEALDGLPLEVF-SSGEVDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHRF 240

Query: 241 HHACLDRWIRTCGECPYCRQHI 256
           H ACLD W+RTCG+CPYCR+ I
Sbjct: 241 HLACLDPWVRTCGDCPYCRRSI 254

[Close]
BLAST of MELO3C018508.2 vs. TrEMBL
Match: tr|A0A2I4F7M8|A0A2I4F7M8_9ROSI (probable E3 ubiquitin-protein ligase RHY1A isoform X1 OS=Juglans regia OX=51240 GN=LOC108996295 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.3e-43
Identity = 125/288 (43.40%), Postives = 164/288 (56.94%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRH----HGH--NANHRRDLNSCG 60
           MTSASELFY RR R GR+D DLG      DR   Y RRH    H H  + +HRRDL+ C 
Sbjct: 1   MTSASELFYSRRSRLGRSDQDLGF-----DRICPYNRRHHIDLHSHQPDHHHRRDLDGCN 60

Query: 61  DFRRSSLQERRQSPRFFNPLSVDRSPAQSDSATS--VGSRNNINGNTQNSLRSGLSGDSR 120
             RRSS               V+R+  +SD +TS  V S N+   N  +  R  L+ + R
Sbjct: 61  PPRRSSHVSHH----------VERASVRSDRSTSQFVASNNSNTENLSSRSRPRLTENDR 120

Query: 121 LPGSVLLARERLLERLRG--------ASSPTSR------------NALVEASNGNPEIST 180
           LPG+VLLAR RLL+RLRG        +S P S               LV+  +     ST
Sbjct: 121 LPGAVLLARARLLQRLRGEPLSGNRESSRPPSYINRTEIMFEDDIRGLVDVGDMGNRTST 180

Query: 181 SRSQRISLID-----ADRMRLVAVPSKRPPGLSQDAINRLQLEVFINTDRIIDDDVMTIT 240
            +S   S I       +R++L+  P K+PPGL+Q+A++ L++EV+ +T     + V++  
Sbjct: 181 GQSVGSSTITDLSSRIERLQLLQEPKKKPPGLTQEALDCLRMEVYSST----VEGVVSRG 240

Query: 241 STDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 256
           S DCSICLE+F +GD LIHLPC HKFH ACLD W+RTCG+CPYCR+ I
Sbjct: 241 SQDCSICLETFLEGDDLIHLPCGHKFHSACLDPWVRTCGDCPYCRRDI 269

[Close]
BLAST of MELO3C018508.2 vs. TrEMBL
Match: tr|A0A061E052|A0A061E052_THECC (RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.0e-43
Identity = 125/262 (47.71%), Postives = 160/262 (61.07%), Query Frame = 0 

Query: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60
           MTSASELFY RR R GR DSD  + S   DRN  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSS-IDRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNN-INGN-TQNSLRSGLSGDSRLPGSVL 120
              R+ S R  +    +RS  + D  TS    +N +N +   +S R  L+ + RLPG+VL
Sbjct: 61  -HVRQFSSRASS--QSERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRIS-----LIDADRMRLVAVPS 180
           LAR RLLERLRG S   S N LV+A +   EIST  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVS--VSTNRLVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTDRIIDDDVMTITSTDCSICLESFTDGDKLIHLPCEHKF 240
           K+PPGL+Q+A++ L LEVF ++  +  D  ++  S DCSICLESF D D L  LPC H+F
Sbjct: 181 KKPPGLTQEALDGLPLEVF-SSGEVDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHRF 240

Query: 241 HHACLDRWIRTCGECPYCRQHI 256
           H ACLD W+RTCG+CPYCR+ I
Sbjct: 241 HLACLDPWVRTCGDCPYCRRSI 253

The following BLAST results are available for this feature:
BLAST of MELO3C018508.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455026.11.9e-145100.00PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo][more]
XP_004136947.11.8e-13595.31PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus] >KGN43862.1 hypoth... [more]
XP_022988901.19.8e-11080.86probable E3 ubiquitin-protein ligase RHY1A [Cucurbita maxima][more]
XP_023529438.19.8e-11080.86probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo][more]
XP_022148864.19.2e-10878.21probable E3 ubiquitin-protein ligase RHY1A [Momordica charantia][more]
BLAST of MELO3C018508.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49850.13.8e-3137.74RING/U-box superfamily protein[more]
AT2G15580.14.4e-1156.52RING/U-box superfamily protein[more]
AT1G12760.11.1e-0942.31Zinc finger, C3HC4 type (RING finger) family protein[more]
AT3G48030.11.4e-0937.80hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ... [more]
AT4G11360.11.4e-0945.76RING-H2 finger A1B[more]
BLAST of MELO3C018508.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q852U6|RHY1A_ARATH6.8e-3037.74Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
sp|Q9NVW2|RNF12_HUMAN2.1e-1033.72E3 ubiquitin-protein ligase RLIM OS=Homo sapiens OX=9606 GN=RLIM PE=1 SV=3[more]
sp|Q9WTV7|RNF12_MOUSE2.1e-1033.72E3 ubiquitin-protein ligase RLIM OS=Mus musculus OX=10090 GN=Rlim PE=1 SV=2[more]
sp|Q7XLY8|ATL41_ORYSJ6.0e-1036.59E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994... [more]
sp|Q641J8|RF12A_XENLA6.0e-1032.56E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis OX=8355 GN=rnf12-a PE=1 SV... [more]
BLAST of MELO3C018508.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C156|A0A1S3C156_CUCME1.3e-145100.00E3 ubiquitin-protein ligase RLIM OS=Cucumis melo OX=3656 GN=LOC103495299 PE=4 SV... [more]
tr|A0A0A0K6D2|A0A0A0K6D2_CUCSA1.2e-13595.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071510 PE=4 SV=1[more]
tr|A0A061E823|A0A061E823_THECC6.2e-4447.71RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao OX=3641 GN... [more]
tr|A0A2I4F7M8|A0A2I4F7M8_9ROSI2.3e-4343.40probable E3 ubiquitin-protein ligase RHY1A isoform X1 OS=Juglans regia OX=51240 ... [more]
tr|A0A061E052|A0A061E052_THECC4.0e-4347.71RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao OX=3641 GN... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018508.2.1MELO3C018508.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 211..251
e-value: 1.3E-5
score: 34.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 210..252
e-value: 1.2E-13
score: 51.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 211..252
score: 13.02
NoneNo IPR availableSMARTSM01197FANCL_C_2coord: 207..260
e-value: 0.0099
score: -1.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..111
NoneNo IPR availablePANTHERPTHR14155:SF293E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATEDcoord: 1..255
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..255
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 210..252
e-value: 2.30366E-16
score: 69.6381
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 198..259
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 170..258
e-value: 1.5E-19
score: 71.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018508.2Csa7G071510Cucumber (Chinese Long) v2cumedB509
MELO3C018508.2CSPI07G06980Wild cucumber (PI 183967)cpimedB523
MELO3C018508.2Cucsa.219270Cucumber (Gy14) v1cgymedB377
MELO3C018508.2CmaCh11G017080Cucurbita maxima (Rimu)cmamedB106
MELO3C018508.2CmoCh11G014100Cucurbita moschata (Rifu)cmomedB091
MELO3C018508.2Lsi03G005640Bottle gourd (USVL1VR-Ls)lsimedB260
MELO3C018508.2Cp4.1LG04g07640Cucurbita pepo (Zucchini)cpemedB715
MELO3C018508.2CsGy7G006520Cucumber (Gy14) v2cgybmedB465
MELO3C018508.2Cla016082Watermelon (97103) v1medwmB232
MELO3C018508.2ClCG02G006670Watermelon (Charleston Gray)medwcgB192
MELO3C018508.2Cla97C02G033660Watermelon (97103) v2medwmbB166
MELO3C018508.2Bhi05G000887Wax gourdmedwgoB217
MELO3C018508.2CsaV3_7G007960Cucumber (Chinese Long) v3cucmedB536
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018508.2Watermelon (97103) v1medwmB214
MELO3C018508.2Watermelon (97103) v1medwmB215
MELO3C018508.2Watermelon (97103) v1medwmB227
MELO3C018508.2Silver-seed gourdcarmedB0189
MELO3C018508.2Silver-seed gourdcarmedB0196
MELO3C018508.2Silver-seed gourdcarmedB0306
MELO3C018508.2Silver-seed gourdcarmedB0382
MELO3C018508.2Silver-seed gourdcarmedB0463
MELO3C018508.2Cucumber (Chinese Long) v3cucmedB101
MELO3C018508.2Cucumber (Chinese Long) v3cucmedB269
MELO3C018508.2Cucumber (Chinese Long) v3cucmedB275
MELO3C018508.2Watermelon (97103) v2medwmbB160
MELO3C018508.2Watermelon (97103) v2medwmbB178
MELO3C018508.2Watermelon (97103) v2medwmbB179
MELO3C018508.2Watermelon (97103) v2medwmbB190
MELO3C018508.2Wax gourdmedwgoB200
MELO3C018508.2Wax gourdmedwgoB228
MELO3C018508.2Wax gourdmedwgoB264
MELO3C018508.2Cucumber (Gy14) v2cgybmedB087
MELO3C018508.2Cucumber (Gy14) v2cgybmedB236
MELO3C018508.2Cucumber (Gy14) v1cgymedB568
MELO3C018508.2Cucumber (Gy14) v1cgymedB639
MELO3C018508.2Cucurbita maxima (Rimu)cmamedB018
MELO3C018508.2Cucurbita maxima (Rimu)cmamedB331
MELO3C018508.2Cucurbita maxima (Rimu)cmamedB535
MELO3C018508.2Cucurbita maxima (Rimu)cmamedB754
MELO3C018508.2Cucurbita maxima (Rimu)cmamedB809
MELO3C018508.2Cucurbita moschata (Rifu)cmomedB006
MELO3C018508.2Cucurbita moschata (Rifu)cmomedB317
MELO3C018508.2Cucurbita moschata (Rifu)cmomedB523
MELO3C018508.2Cucurbita moschata (Rifu)cmomedB751
MELO3C018508.2Cucurbita pepo (Zucchini)cpemedB103
MELO3C018508.2Cucurbita pepo (Zucchini)cpemedB220
MELO3C018508.2Cucurbita pepo (Zucchini)cpemedB263
MELO3C018508.2Cucurbita pepo (Zucchini)cpemedB457
MELO3C018508.2Cucurbita pepo (Zucchini)cpemedB883
MELO3C018508.2Wild cucumber (PI 183967)cpimedB100
MELO3C018508.2Wild cucumber (PI 183967)cpimedB266
MELO3C018508.2Cucumber (Chinese Long) v2cumedB100
MELO3C018508.2Cucumber (Chinese Long) v2cumedB266
MELO3C018508.2Melon (DHL92) v3.6.1medmedB080
MELO3C018508.2Melon (DHL92) v3.6.1medmedB094
MELO3C018508.2Melon (DHL92) v3.6.1medmedB098
MELO3C018508.2Bottle gourd (USVL1VR-Ls)lsimedB306
MELO3C018508.2Bottle gourd (USVL1VR-Ls)lsimedB485
MELO3C018508.2Watermelon (Charleston Gray)medwcgB214
MELO3C018508.2Watermelon (Charleston Gray)medwcgB184
MELO3C018508.2Watermelon (Charleston Gray)medwcgB204