Cla016082 (gene) Watermelon (97103) v1

Overview
NameCla016082
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRING-H2 finger protein (AHRD V1 **-- Q8LJR8_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
LocationChr2 : 7293391 .. 7295396 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTGGGACTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGTCATCATGCTCACAACGGCAACCACCGTCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCATCGCTGCATGAACGCCGCCAATCTCCTAGATTTTTTAACCCTGTAAGGAAGGCTGGGTTTCTGTTACTTGAGAAATTGGGTTTTTAATTCGATGAAGTCTATATTAACGGCTGAGAATTGTTGGAGTTGGAAGAACTGTTCATATTTTGTTTTGATTGGGAATTTTTTAGCGTTTCTGACCTAAAAGTTCTTCTAAACCGTAGAATCAGTTGGGAATATGTTGAAAAGATCATGTTTGCCCTAATTTATTAGTTAAGGTTGTTGGGATGGTTTTATATGATATCCCTGGGTTCATGCCCTAAGAATAGTGTCTTTTGCACTTAATTTAGTCTTGTAATCGGAGTTCCAATTATGAGTTTCTTTGTTTTGTTAATGTTTTTAAAAGTTTTAGTTGTTTTTGGTTTTAGAATTTGACTATGATTCAAATGTTTTCGTATGAAAGATGAAAACTGATTAAAAACTAAATGGTTAGCAACGGATATTTGGCTAAGCTAATGAGTTAGTGATTATTCTTATTCTTCAGTGATAATTCTGTTTTCCATTGCTATGAAATACTTGGAACCTGAATATAACTTTTCCAGTTTTATTAGCTTCTTAATGCTACTTGGCTGTGAAAATATGATTTAGTTGGTATGTGATCATGGAGACATAACTTCCTTACAATTAAGGATGCTTTTCTATATTTCTTTTTCTGGGTTGTCATCTCTATTCTGAATTTCAAATTCAATTAGTTTGGAGGCATTAACACTATGTCTTCATTGTAGCTTTCTGTTGACCGATCGCCTGCACAGTCTGACTCAGTTACAAGCATTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGCTTAAGTGGGGAGTCCAGATTGCCTGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTCGAGAGATTGAGAGGTGTCTCTTCACCGACGAGCAGGTCAGTTCCTATTGTCATGTGCTTGTTGTTTACACTACTATGCAGAAAAATTTGGGACTTCAATTGGAATATTCCATGTTATTTCTCCTAGAAACATCTTTCTAGATATAATCACTTTTGTCAGGTTCAAGACATGTCTCTAATTATACAAAATCAATGTAGTGTTTGATTTTACACTTTTAAATGTGATTTTCATATAATCAAAGTTGATTTTAAATAATTAAATGAACGCTTGTAAACACATGCTGTGGTATGAATTTACTTGTATGATTTTCTTTGTTGATTGGGAGTTGGTTGTACTGTATACTCAGAAAATAGTATCCGATTCCAATAAACTCATGAAGTTTCTACAATTTCTGTCCTAGACTTCAACATTCTTGAAAAACTATATTTCTGGATAGCAAATTGGACTTGAAAATTGTTACTGGTTGGCCATTTGTATGTTGACAACTGGAATATATCCCAGCTTTGTAGTATTGCTAACTGAATTAGTTTATTCATCAGGAACACTCTTGCTGAAGCATCAGATGTAAGTCCAGAAATCTTGACAAGTCGATCACAGAGGATATCCCTTGTTGATGCTGACAGGATTCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGAGGTTTTTATCAATACAGAGCACATCATCGACGATGACATGACTACGACAACAACGTCAAAGGATTGTAGTATATGTTTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCTTGTGAGCACAAATTTCATCATGCTTGCTTGGACCGATGGATTCGAACATGTGGAGAATGTCCATATTGTCGACAACATATCGTCGTTAACTAA

mRNA sequence

ATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTGGGACTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGTCATCATGCTCACAACGGCAACCACCGTCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCATCGCTGCATGAACGCCGCCAATCTCCTAGATTTTTTAACCCTCTTTCTGTTGACCGATCGCCTGCACAGTCTGACTCAGTTACAAGCATTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGCTTAAGTGGGGAGTCCAGATTGCCTGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTCGAGAGATTGAGAGGTGTCTCTTCACCGACGAGCAGGAACACTCTTGCTGAAGCATCAGATGTAAGTCCAGAAATCTTGACAAGTCGATCACAGAGGATATCCCTTGTTGATGCTGACAGGATTCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGAGGTTTTTATCAATACAGAGCACATCATCGACGATGACATGACTACGACAACAACGTCAAAGGATTGTAGTATATGTTTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCTTGTGAGCACAAATTTCATCATGCTTGCTTGGACCGATGGATTCGAACATGTGGAGAATGTCCATATTGTCGACAACATATCGTCGTTAACTAA

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTGGGACTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGTCATCATGCTCACAACGGCAACCACCGTCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCATCGCTGCATGAACGCCGCCAATCTCCTAGATTTTTTAACCCTCTTTCTGTTGACCGATCGCCTGCACAGTCTGACTCAGTTACAAGCATTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGCTTAAGTGGGGAGTCCAGATTGCCTGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTCGAGAGATTGAGAGGTGTCTCTTCACCGACGAGCAGGAACACTCTTGCTGAAGCATCAGATGTAAGTCCAGAAATCTTGACAAGTCGATCACAGAGGATATCCCTTGTTGATGCTGACAGGATTCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGAGGTTTTTATCAATACAGAGCACATCATCGACGATGACATGACTACGACAACAACGTCAAAGGATTGTAGTATATGTTTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCTTGTGAGCACAAATTTCATCATGCTTGCTTGGACCGATGGATTCGAACATGTGGAGAATGTCCATATTGTCGACAACATATCGTCGTTAACTAA

Protein sequence

MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSSLHERRQSPRFFNPLSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN
Homology
[Close]
BLAST of Cla016082 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.6e-42
Identity = 110/265 (41.51%), Postives = 142/265 (53.58%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQ-RRHHAHNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  RRH  H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANTQNSLRTGLSGESRLPGSVL 120
           +   RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRRF---FHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLFERLRGVS-SPTSRNTLAEASDVSPEILTSRSQRISLVDADRI------RLVPA 180
           LAR+RLFERLRGVS S  SR+      D        R      +D D I      ++   
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDD-------QRESSFHSIDGDPIFQLAGLQVTYE 180

Query: 181 PSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCE 240
            +K+P GL+QDAIN L  + F + E  +  +M      +DCSICLESFT GD LI LPC 
Sbjct: 181 CNKKPQGLTQDAINCLHRQTFSSAE--VKSEM------RDCSICLESFTKGDMLISLPCT 240

Query: 241 HKFHHACLDRWIRTCGECPYCRQHI 257
           H FH +CL+ W+R CG+CP CR+ I
Sbjct: 241 HSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]
BLAST of Cla016082 vs. Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-11
Identity = 47/181 (25.97%), Postives = 77/181 (42.54%), Query Frame = 1 

Query: 79  SPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLARERLFERLRGVSSPTSRN 138
           S + S S +S  S ++ ++++ +S  +   GES    S L           G SS  S  
Sbjct: 453 SSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSN-----EGSSSSGSSG 512

Query: 139 TLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLSQDAINRLQLEVFINTEHI 198
              E    +P           L  A    L      +P GL+++ I+ L +  F   + +
Sbjct: 513 ARREGRHRAPVTFDESGSLPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLAMRSFGENDAL 572

Query: 199 IDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVV 258
                      K CS+C+  +T+G+KL  LPC H++H  C+DRW+     CP CR+ ++ 
Sbjct: 573 -----------KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLA 617

Query: 259 N 260
           +
Sbjct: 633 S 617

[Close]
BLAST of Cla016082 vs. Swiss-Prot
Match: ZNRF3_HUMAN (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-10
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1 

Query: 202 DMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 258
           D  +++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 283 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338

[Close]
BLAST of Cla016082 vs. Swiss-Prot
Match: ZNRF3_DANRE (E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-10
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1 

Query: 202 DMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 258
           D  +++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 257 DSVSSSSTSDCAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNII 312

[Close]
BLAST of Cla016082 vs. Swiss-Prot
Match: ZNRF3_XENTR (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.7e-10
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1 

Query: 202 DMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 258
           D  +++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 256 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311

[Close]
BLAST of Cla016082 vs. TrEMBL
Match: A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 2.4e-127
Identity = 223/259 (86.10%), Postives = 236/259 (91.12%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHH HNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLA 120
           L ERRQSPRFFNPLSVDRSPAQSDS TS+ SRNNIN NTQNSLR+GLSG+SRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLS 180
           RERL ERLRG SSPT+RN L EAS+ +PE  TSRSQRISLVDADR+RLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQLEVFINT+HII+D +  T TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 260
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]
BLAST of Cla016082 vs. TrEMBL
Match: A0A061E823_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 9.9e-49
Identity = 126/264 (47.73%), Postives = 163/264 (61.74%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANT-QNSLRTGLSGESRLPGSVL 120
            H R+ S R  +  S +RS  + D  TS     N +NA+   +S R  L+   RLPG+VL
Sbjct: 61  -HVRQFSSRASSQ-SQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRIS-----LVDADRIRLVPAPS 180
           LAR RL ERLRGVS  T+R  L +A D   EI T  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHK 240
           K+PPGL+Q+A++ L LEVF + E  +D D   +  S+DCSICLESF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLDRWIRTCGECPYCRQHIV 258
           FH ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 255

[Close]
BLAST of Cla016082 vs. TrEMBL
Match: A0A061E052_THECC (RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-48
Identity = 125/264 (47.35%), Postives = 162/264 (61.36%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANT-QNSLRTGLSGESRLPGSVL 120
            H R+ S R  +    +RS  + D  TS     N +NA+   +S R  L+   RLPG+VL
Sbjct: 61  -HVRQFSSRASS--QSERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRIS-----LVDADRIRLVPAPS 180
           LAR RL ERLRGVS  T+R  L +A D   EI T  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHK 240
           K+PPGL+Q+A++ L LEVF + E  +D D   +  S+DCSICLESF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLDRWIRTCGECPYCRQHIV 258
           FH ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 254

[Close]
BLAST of Cla016082 vs. TrEMBL
Match: A0A067EVC3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.4e-48
Identity = 132/291 (45.36%), Postives = 168/291 (57.73%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSV-TSIGSRNNINANTQNS-LRTGLS-----GESRL 120
            H R  S R         SP++  SV    G+  ++++N  NS +  G S     G  RL
Sbjct: 61  -HARHLSHR--------PSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLFERLRGVS-SPTSRN------------------TLAEASDVSPEILTSR 180
           PG+VLLAR RL ERLRGVS S   R+                   L +A D + E     
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGW 180

Query: 181 SQRIS----LVDADRIR--LVPAPSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTT 240
           S   S    L+ +   R  LV    K+PPGL+Q+A++ L +E+F      I  +   + T
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIF--NSFAISSEGEASKT 240

Query: 241 SKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 260
           S DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]
BLAST of Cla016082 vs. TrEMBL
Match: V4SB77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-47
Identity = 130/286 (45.45%), Postives = 164/286 (57.34%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTSIG-SRNNINANTQNSLRT-GLSGESRLPGSVL 120
            H R    R   P   +R+    D  TS   S N +N+    S  +   +G  RLPG+VL
Sbjct: 61  -HARHLPHR---PSPSERASVWLDQGTSQHVSSNPMNSEVSRSTSSPSWNGNERLPGTVL 120

Query: 121 LARERLFERLRGVS-SPTSRN------------------TLAEASDVSPEILTSRSQRIS 180
           LAR RL ERLRGVS S   R+                   L +A D + E     S   S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 ----LVDADRIR--LVPAPSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCS 240
               L+ +   R  LV    K+PPGL+Q+A++ L +E+F      I  +   + TS DCS
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIF--NSFAISSEGEASKTSLDCS 240

Query: 241 ICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 260
           ICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 ICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]
BLAST of Cla016082 vs. NCBI nr
Match: gi|449438341|ref|XP_004136947.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus])

HSP 1 Score: 463.0 bits (1190), Expect = 3.4e-127
Identity = 223/259 (86.10%), Postives = 236/259 (91.12%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHH HNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLA 120
           L ERRQSPRFFNPLSVDRSPAQSDS TS+ SRNNIN NTQNSLR+GLSG+SRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLS 180
           RERL ERLRG SSPT+RN L EAS+ +PE  TSRSQRISLVDADR+RLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQLEVFINT+HII+D +  T TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 260
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]
BLAST of Cla016082 vs. NCBI nr
Match: gi|659110057|ref|XP_008455026.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo])

HSP 1 Score: 462.6 bits (1189), Expect = 4.5e-127
Identity = 224/256 (87.50%), Postives = 236/256 (92.19%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDR+LQYQRRHH HN NHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLA 120
           L ERRQSPRFFNPLSVDRSPAQSDS TS+GSRNNIN NTQNSLR+GLSG+SRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLS 180
           RERL ERLRG SSPTSRN L EAS+ +PEI TSRSQRISL+DADR+RLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQLEVFINT+ IIDDD+  T TS DCSICLESFTDGDKLIHLPCEHKFHHACLD
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240

Query: 241 RWIRTCGECPYCRQHI 257
           RWIRTCGECPYCRQHI
Sbjct: 241 RWIRTCGECPYCRQHI 255

[Close]
BLAST of Cla016082 vs. NCBI nr
Match: gi|590687187|ref|XP_007042592.1| (RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 126/264 (47.73%), Postives = 163/264 (61.74%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANT-QNSLRTGLSGESRLPGSVL 120
            H R+ S R  +  S +RS  + D  TS     N +NA+   +S R  L+   RLPG+VL
Sbjct: 61  -HVRQFSSRASSQ-SQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRIS-----LVDADRIRLVPAPS 180
           LAR RL ERLRGVS  T+R  L +A D   EI T  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHK 240
           K+PPGL+Q+A++ L LEVF + E  +D D   +  S+DCSICLESF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLDRWIRTCGECPYCRQHIV 258
           FH ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 255

[Close]
BLAST of Cla016082 vs. NCBI nr
Match: gi|568867241|ref|XP_006486949.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis])

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 134/291 (46.05%), Postives = 169/291 (58.08%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSV-TSIGSRNNINANTQNS-LRTGLS-----GESRL 120
            H R  S R         SP++  SV    G+  ++++N  NS +  G S     G  RL
Sbjct: 61  -HARHLSHR--------PSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLFERLRGVS-SPTSRN------------------TLAEASDVSPEILTSR 180
           PG+VLLAR RL ERLRGVS S   R+                   L +A D + E  T  
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSNNNQRGNIFGDELRLVDAGDWAAETSTGW 180

Query: 181 SQRIS----LVDADRIR--LVPAPSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTT 240
           S   S    L+ +   R  LV    K+PPGL+Q+A++ L +EVF      I  +   + T
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEVF--NSFAISSEGEASKT 240

Query: 241 SKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 260
           S DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]
BLAST of Cla016082 vs. NCBI nr
Match: gi|590687191|ref|XP_007042593.1| (RING/U-box superfamily protein, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 200.3 bits (508), Expect = 4.2e-48
Identity = 125/264 (47.35%), Postives = 162/264 (61.36%), Query Frame = 1 

Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANT-QNSLRTGLSGESRLPGSVL 120
            H R+ S R  +    +RS  + D  TS     N +NA+   +S R  L+   RLPG+VL
Sbjct: 61  -HVRQFSSRASS--QSERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRIS-----LVDADRIRLVPAPS 180
           LAR RL ERLRGVS  T+R  L +A D   EI T  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHK 240
           K+PPGL+Q+A++ L LEVF + E  +D D   +  S+DCSICLESF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLDRWIRTCGECPYCRQHIV 258
           FH ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 254

The following BLAST results are available for this feature:
BLAST of Cla016082 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHY1A_ARATH7.6e-4241.51Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2... [more]
RNF12_HUMAN4.1e-1125.97E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3[more]
ZNRF3_HUMAN5.9e-1041.07E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3[more]
ZNRF3_DANRE5.9e-1041.07E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2[more]
ZNRF3_XENTR7.7e-1041.07E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1[more]
BLAST of Cla016082 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6D2_CUCSA2.4e-12786.10Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1[more]
A0A061E823_THECC9.9e-4947.73RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007... [more]
A0A061E052_THECC2.9e-4847.35RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007... [more]
A0A067EVC3_CITSI6.4e-4845.36Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1[more]
V4SB77_9ROSI1.4e-4745.45Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1[more]
BLAST of Cla016082 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438341|ref|XP_004136947.1|3.4e-12786.10PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus][more]
gi|659110057|ref|XP_008455026.1|4.5e-12787.50PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo][more]
gi|590687187|ref|XP_007042592.1|1.4e-4847.73RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao][more]
gi|568867241|ref|XP_006486949.1|1.9e-4846.05PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis][more]
gi|590687191|ref|XP_007042593.1|4.2e-4847.35RING/U-box superfamily protein, putative isoform 3 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0008150 biological_process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0061630 ubiquitin protein ligase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU11881watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU15201watermelon EST collection version 2.0transcribed_cluster
WMU40667watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla016082Cla016082.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU40667WMU40667transcribed_cluster
WMU11881WMU11881transcribed_cluster
WMU15201WMU15201transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 211..253
score: 4.7
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 212..252
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 212..253
score: 1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 208..256
score: 7.7
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 35..49
score: 2.0E-41coord: 174..259
score: 2.0
NoneNo IPR availablePANTHERPTHR14155:SF182SUBFAMILY NOT NAMEDcoord: 174..259
score: 2.0E-41coord: 35..49
score: 2.0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 195..258
score: 2.7