WMU11881 (transcribed_cluster) Watermelon (97103) v1

NameWMU11881
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr2 : 7293736 .. 7295452 (+)
Sequence length500
The following sequences are available for this feature:

transcribed_cluster sequence

ATCTGATGCTTCAGCAAGAGTGTTCCTGCTCGTCGGTGAAGAGACACCTCTCAATCTCTCGAAAAGCCTTTCTCTAAGCAAGTAAAACGGATCCAGGCAATCTGGACTCCCCACTTAAGCCAGTCCTCAAGCTATTCTGTGTATTTGCATTGATATTATTTCTAGAACCAATGCTTGTAACTGAGTCAGACTGTGCAGGCGATCGGTCAACAGAAAAGAGGGGTTAAAAAAATCTAGGAGATTGGCGGCGTTCATGCAGCGATGACCGCCGGAAAAGCGCCACAGGAGTTCAAAATCGCGACGGTGGTTGCCGTTGTGAGCATGATGACGGCGTTGATACTGAAGATGCCGATCGGGAGGCTCAGAATCAAGTCCCCAAAATCCGCGTCAGTGCGACCCAATCTGTACCTCCGACAATGAAACAGCTCCGAAGCGCTCGTCATGCACAGATTCAAAACGCTTCAATGCTTATTTTGAGTAGAATCTGAAATGTAAAAAAA
BLAST of WMU11881 vs. TrEMBL
Match: A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-21
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = -2

Query: 77  FRRSSLHERRQSPRFF*PLFSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLP 136
           FRRSSL ERRQSPRFF PL SVDRSPAQSDS TS+ SRNNIN NTQNSLR+GLSG+SRLP
Sbjct: 56  FRRSSLQERRQSPRFFNPL-SVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLP 115

Query: 137 GSVLLA 196
           GSVLLA
Sbjct: 116 GSVLLA 120

Query: 197 256
           
Sbjct: 176 120

Query: 257 275
           
Sbjct: 236 120

BLAST of WMU11881 vs. TrEMBL
Match: A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-01
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = -1

Query: 375 MTSASELFHCRRYRLGRTDADFG 434
           MTSASELF+CRRYR GRTD+D G
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLG 23

Query: 435 444
           
Sbjct: 61  23


HSP 2 Score: 35.0 bits (79), Expect = 1.0e+02
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = -3

Query: 334 GLDSEPPDRHLQYQ 376
           GLDSEPPDRHLQYQ
Sbjct: 23  GLDSEPPDRHLQYQ 36

BLAST of WMU11881 vs. NCBI nr
Match: gi|659110057|ref|XP_008455026.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 3.6e-21
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = -2

Query: 77  FRRSSLHERRQSPRFF*PLFSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLP 136
           FRRSSL ERRQSPRFF PL SVDRSPAQSDS TS+GSRNNIN NTQNSLR+GLSG+SRLP
Sbjct: 56  FRRSSLQERRQSPRFFNPL-SVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLP 115

Query: 137 GSVLLA 196
           GSVLLA
Sbjct: 116 GSVLLA 120

Query: 197 256
           
Sbjct: 176 120

Query: 257 275
           
Sbjct: 236 120

BLAST of WMU11881 vs. NCBI nr
Match: gi|449438341|ref|XP_004136947.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = -2

Query: 77  FRRSSLHERRQSPRFF*PLFSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLP 136
           FRRSSL ERRQSPRFF PL SVDRSPAQSDS TS+ SRNNIN NTQNSLR+GLSG+SRLP
Sbjct: 56  FRRSSLQERRQSPRFFNPL-SVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLP 115

Query: 137 GSVLLA 196
           GSVLLA
Sbjct: 116 GSVLLA 120

Query: 197 256
           
Sbjct: 176 120

Query: 257 275
           
Sbjct: 236 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K6D2_CUCSA5.6e-2186.36Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1[more]
A0A0A0K6D2_CUCSA1.0e-0182.61Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659110057|ref|XP_008455026.1|3.6e-2187.88PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo][more]
gi|449438341|ref|XP_004136947.1|1.8e-2086.36PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla016082Cla016082gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0073762S2_0073762EST
S3_0035960S3_0035960EST