Cp4.1LG04g07640 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionE3 ubiquitin-protein ligase RLIM
LocationCp4.1LG04 : 3929986 .. 3932512 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTTTTTTTTTTTTTTTTTTAATTCTCTCGAATTATTTAATCATAAATAAAAGATAAAGATAAGAATCTAGTAACCTGTTGAGTTCCGATCCAAGCTCGAGTTTTCCGTTCTCTTCGTCTTCATTCAATCTGTCTCGTAGCGTAAGCAACCAAGCAATCCCCCGCCATTTCCTGCAACTTCCATCGATATTTCTCCGTAATTTCCCCTATTTTGCTTCCCAGTTTAAATTCCTCTCCAGTTTCCGCTTCCTTTTCCTTCCCTTTGTTGTGAAACCGCCTTCAATTTCAGTAATTTCGTCAAATTTGAGGGGAAGAACAAGCATTAGAGCAGCTGAGTCTGTGTATGACGAGCGCTTCGGAGTTGTTTCACAGTCGGAGGTATAGATTGGGTCGCACAGATGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGCCATCATGGTCATAATGGCAATCACCGCCGCGTTTTGAACGCATGTGGTGCTTTCCGCCGGTCCTCGCTGCAAGAACGCCGTCAATCTCCCCGGTTTTTGAATCCTGTAAGAACAAACAAATTTGACAAACTTCTCTGTTTGTGTTATTATCGCGTGCGGATTATTTTTCTTGTTGTTCTTACTTCGGAAATGATTTTGACTTCGAGAAATTTATATTAATTGGCTGCTAATTGTTGGAGTTGGAGGAACTGTTCAAATTTTATTTTGATTGAATTATGTGTTTGTTTCTGACCTAACAGTGTTTATAAACTGTATAGCCAATTAGGAGGAATATGTTGAAAAGAGCATTATGCCCTAATTCATCAACTTAAGTTCTTGGTCTGAGAGTACTGTTCTTTTCCACCTAACCATTGACTTAAGTTTTTTCTGGATTTTGGATTGATCTAACAAGAACTCTTGTCCACCCTGCTGTTAATTCAGTGATTATTTTCATTCTTCAATGCTAATTCTGTTTTCATATTGCTGTGAAATCCTTAGAACCAAAATAAATTAAATGACAGAACTAGGTTTTGAAAGTGATGACGACTAAACTCTCCAAAATTTATAAGCTTTTAATGCTACTTGGCTATGAAGTCTTGATTTAATTGTGGTTTTTCTGGGTTGTTATCTTGGACTGAATGTTGAATTCAATTAGTTTGGAGGTATTGACACTCCATATCTTCTTGTAGCTTGCTGTCGATCGATCGCCTGCTCAATCTGAATCGGGTATAAGCGTTGGTTCTAGAAATAATATCAATGCAAATATTCAGAATAGCTTGAGGCCTGGGTTAAGTGGGGATTCCAGATTGCCAGGCTCTGTTTTACTTGCAAGAGAAAGGCTTTTCGAGAGATTGAGAGGCGCCTCTTCACCAACGATCAGGTTAGTTGCTACTCTATTATCATGTGCTTGTTTAGACTGCTATACATAAAAGTTTGGGAATTCAATTGGAATTGTAACGGCCCAAGCTCATTGTTAGTAGATATTGTCCTCTTTGAGCTTTCCCATTCGGGCTTCCCTTTAAGGTTTTTAAAACGTGTCTGTTAGGAAGAGGTTTCCACACCCTTATAAAGAACCGCTTCGTTCTCGTTCCCAACCGATGTGGGATCTTACAGGAATAGTCCCTCCTAGAGACATAATCTTTATACCTATTGACGCGTCATGAGTTTGCCTGTGGCATCTTTCTAGATTTTGGTACGATTATGACTGCTATGAATCTGCTTGTATATACCCAGAAAATAGGATCCAATTCCTATAAATTCGTACAATTTCAACTCTCTACGAACTGCCGAGCTATCCCGTTTCATCTTATTCTCCTAGATTTATATATGGATATTGTTTGTTCATCTATGTGTTGAAAAACTGGAACGGATCCCTGCTCTGTCATAACTGAAGTGGTTTATTTATCAGAAATGGTCTTGTTGAAGCATTGGATTGGAGTCCAGAAATTTCAGCAAGTCGATCGCAGATGATATCCCTCGAGGATGCTGACAGGTTGCGGTTGGTTCCTGCAGTCAGCAAGAGGCCCCCTGGTCTCTCACAGGAGGCAATCAACTGCTTACAACTGGAGCGTTTTATCGACATAGAGCATATCATTGACGATGACTTGACGATGATAAGAACATCAAACGATTGTAGCATATGTCTAGACAGTTTCATAGATGGAGACAAGCTCATTCATTTGCCCTGTAAGCACAAATTTCACCATGCTTGCTTGGAACAATGGATTCGAACTTGTGGTGAATGTCCATATTGTCGACAACGTATCGTTGTTAACTAATCTTTTCTAACACGTTTTGCAACTCGGGATTTCGTGTATGTACAAAGGTTAAGACAGTTGACCAACAAGCATCAGAAGTTGTGGTATTAATCCCTCTAAGTTGTGAGTTGAGACCAAATTGTGTGGGAATTTTATGAAAGATGTGTGTAGGATACTATATGTTGAGAAAAGGATGGTTTTTTTTGTACAAAATGAAAAAGCAGTCGCGTATGTACTCTAGTTAAAAACTACCACTGCCATTCAATTTG

mRNA sequence

TTTTTTTTTTTTTTTTTTTTTTTTTAATTCTCTCGAATTATTTAATCATAAATAAAAGATAAAGATAAGAATCTAGTAACCTGTTGAGTTCCGATCCAAGCTCGAGTTTTCCGTTCTCTTCGTCTTCATTCAATCTGTCTCGTAGCGTAAGCAACCAAGCAATCCCCCGCCATTTCCTGCAACTTCCATCGATATTTCTCCGTAATTTCCCCTATTTTGCTTCCCAGTTTAAATTCCTCTCCAGTTTCCGCTTCCTTTTCCTTCCCTTTGTTGTGAAACCGCCTTCAATTTCAGTAATTTCGTCAAATTTGAGGGGAAGAACAAGCATTAGAGCAGCTGAGTCTGTGTATGACGAGCGCTTCGGAGTTGTTTCACAGTCGGAGGTATAGATTGGGTCGCACAGATGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGCCATCATGGTCATAATGGCAATCACCGCCGCGTTTTGAACGCATGTGGTGCTTTCCGCCGGTCCTCGCTGCAAGAACGCCGTCAATCTCCCCGGTTTTTGAATCCTCTTGCTGTCGATCGATCGCCTGCTCAATCTGAATCGGGTATAAGCGTTGGTTCTAGAAATAATATCAATGCAAATATTCAGAATAGCTTGAGGCCTGGGTTAAGTGGGGATTCCAGATTGCCAGGCTCTGTTTTACTTGCAAGAGAAAGGCTTTTCGAGAGATTGAGAGGCGCCTCTTCACCAACGATCAGAAATGGTCTTGTTGAAGCATTGGATTGGAGTCCAGAAATTTCAGCAAGTCGATCGCAGATGATATCCCTCGAGGATGCTGACAGGTTGCGGTTGGTTCCTGCAGTCAGCAAGAGGCCCCCTGGTCTCTCACAGGAGGCAATCAACTGCTTACAACTGGAGCGTTTTATCGACATAGAGCATATCATTGACGATGACTTGACGATGATAAGAACATCAAACGATTGTAGCATATGTCTAGACAGTTTCATAGATGGAGACAAGCTCATTCATTTGCCCTGTAAGCACAAATTTCACCATGCTTGCTTGGAACAATGGATTCGAACTTGTGGTGAATGTCCATATTGTCGACAACGTATCGTTGTTAACTAATCTTTTCTAACACGTTTTGCAACTCGGGATTTCGTGTATGTACAAAGGTTAAGACAGTTGACCAACAAGCATCAGAAGTTGTGGTATTAATCCCTCTAAGTTGTGAGTTGAGACCAAATTGTGTGGGAATTTTATGAAAGATGTGTGTAGGATACTATATGTTGAGAAAAGGATGGTTTTTTTTGTACAAAATGAAAAAGCAGTCGCGTATGTACTCTAGTTAAAAACTACCACTGCCATTCAATTTG

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGTTGTTTCACAGTCGGAGGTATAGATTGGGTCGCACAGATGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGCCATCATGGTCATAATGGCAATCACCGCCGCGTTTTGAACGCATGTGGTGCTTTCCGCCGGTCCTCGCTGCAAGAACGCCGTCAATCTCCCCGGTTTTTGAATCCTCTTGCTGTCGATCGATCGCCTGCTCAATCTGAATCGGGTATAAGCGTTGGTTCTAGAAATAATATCAATGCAAATATTCAGAATAGCTTGAGGCCTGGGTTAAGTGGGGATTCCAGATTGCCAGGCTCTGTTTTACTTGCAAGAGAAAGGCTTTTCGAGAGATTGAGAGGCGCCTCTTCACCAACGATCAGAAATGGTCTTGTTGAAGCATTGGATTGGAGTCCAGAAATTTCAGCAAGTCGATCGCAGATGATATCCCTCGAGGATGCTGACAGGTTGCGGTTGGTTCCTGCAGTCAGCAAGAGGCCCCCTGGTCTCTCACAGGAGGCAATCAACTGCTTACAACTGGAGCGTTTTATCGACATAGAGCATATCATTGACGATGACTTGACGATGATAAGAACATCAAACGATTGTAGCATATGTCTAGACAGTTTCATAGATGGAGACAAGCTCATTCATTTGCCCTGTAAGCACAAATTTCACCATGCTTGCTTGGAACAATGGATTCGAACTTGTGGTGAATGTCCATATTGTCGACAACGTATCGTTGTTAACTAA

Protein sequence

MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSSLQERRQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIVVN
Homology
[Close]
BLAST of Cp4.1LG04g07640 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.9e-38
Identity = 101/258 (39.15%), Postives = 136/258 (52.71%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHG-HNGNHRRVLNACGAFRRS 60
           MTSASELF +RR R GR+D  L  D+     H  +  R HG H+ N R   + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFLNPLAVDRSPAQSESGIS-VGSRNNINANIQNSLRPGLSGDSRLPGSVL 120
           + + RR    F +P+     P +   G S   + ++ +   Q+S    L+G  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPG 180
           LAR+RLFERLRG S  +       +LD   E S        +     L++    +K+P G
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSIDGDPIFQLAGLQVTYECNKKPQG 180

Query: 181 LSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHAC 240
           L+Q+AINCL  + F   E        +     DCSICL+SF  GD LI LPC H FH +C
Sbjct: 181 LTQDAINCLHRQTFSSAE--------VKSEMRDCSICLESFTKGDMLISLPCTHSFHSSC 240

Query: 241 LEQWIRTCGECPYCRQRI 257
           L  W+R CG+CP CR+ I
Sbjct: 241 LNPWLRACGDCPCCRRAI 247

[Close]
BLAST of Cp4.1LG04g07640 vs. Swiss-Prot
Match: ZNRF3_MOUSE (E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 208 TSNDCSICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIV 258
           +++DC+ICL+ +IDG++L  +PC H+FH  C++ W+     CP+CR  I+
Sbjct: 286 STSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 335

[Close]
BLAST of Cp4.1LG04g07640 vs. Swiss-Prot
Match: ZNRF3_HUMAN (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 208 TSNDCSICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIV 258
           +++DC+ICL+ +IDG++L  +PC H+FH  C++ W+     CP+CR  I+
Sbjct: 289 STSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338

[Close]
BLAST of Cp4.1LG04g07640 vs. Swiss-Prot
Match: ZNRF3_XENTR (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-09
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 208 TSNDCSICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIV 258
           +++DC+ICL+ +IDG++L  +PC H+FH  C++ W+     CP+CR  I+
Sbjct: 262 STSDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311

[Close]
BLAST of Cp4.1LG04g07640 vs. Swiss-Prot
Match: ZNRF3_DANRE (E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-09
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 208 TSNDCSICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIV 258
           +++DC+ICL+ +IDG++L  +PC H+FH  C++ W+     CP+CR  I+
Sbjct: 263 STSDCAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNII 312

[Close]
BLAST of Cp4.1LG04g07640 vs. TrEMBL
Match: A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 5.7e-113
Identity = 205/259 (79.15%), Postives = 224/259 (86.49%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF+ RRYR GRTD+DLGLDSEPPDRHLQYQRRHHGHNGNHRR LN+CG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120
           LQERRQSPRF NPL+VDRSPAQS+S  SV SRNNIN N QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180
           RERL ERLRGASSPT RN LVEA + +PE + SRSQ ISL DADR+RLV   SKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240
           Q+AIN LQLE FI+ +HII+D +  I TS DCSICL+SF DGDKLIHLPC+HKFHH CL+
Sbjct: 181 QDAINRLQLEVFINTDHIINDGVMTI-TSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 QWIRTCGECPYCRQRIVVN 260
           +WIRTCGECPYCRQ I +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]
BLAST of Cp4.1LG04g07640 vs. TrEMBL
Match: V4SB77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 132/286 (46.15%), Postives = 168/286 (58.74%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF++RR R+GR D DLGLDS   +R L + RRHH HN NHR  L+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVG-SRNNINANIQNSLR-PGLSGDSRLPGSVL 120
               R  P    P   +R+    + G S   S N +N+ +  S   P  +G+ RLPG+VL
Sbjct: 61  --HARHLPH--RPSPSERASVWLDQGTSQHVSSNPMNSEVSRSTSSPSWNGNERLPGTVL 120

Query: 121 LARERLFERLRGAS-SPTIRNG------------------LVEALDWSPEISASRSQMIS 180
           LAR RL ERLRG S S   R+G                  LV+A DW+ E SA  S + S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 ------LEDADRLRLVPAVSKRPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCS 240
                     +RL+LV    K+PPGL+QEA++CL +E F      I  +    +TS DCS
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFA--ISSEGEASKTSLDCS 240

Query: 241 ICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIVVN 260
           ICL+SF DGD+LI LPCKH+FH  CL+ W+R+CG+CPYCR+ IVVN
Sbjct: 241 ICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]
BLAST of Cp4.1LG04g07640 vs. TrEMBL
Match: A0A067EVC3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.4e-50
Identity = 132/286 (46.15%), Postives = 170/286 (59.44%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF++RR R+GR D DLGLDS   +R L + RRHH HN NHR  L+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVG-SRNNINANI-QNSLRPGLSGDSRLPGSVL 120
              R  S R   P   +R+    + G S   S N +N+ + + +  P  +G+ RLPG+VL
Sbjct: 61  -HARHLSHR---PSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERLPGTVL 120

Query: 121 LARERLFERLRGAS-SPTIRNG------------------LVEALDWSPEISASRSQMIS 180
           LAR RL ERLRG S S   R+G                  LV+A DW+ E SA  S + S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 ------LEDADRLRLVPAVSKRPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCS 240
                     +RL+LV    K+PPGL+QEA++CL +E F      I  +    +TS DCS
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFA--ISSEGEASKTSLDCS 240

Query: 241 ICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIVVN 260
           ICL+SF DGD+LI LPCKH+FH  CL+ W+R+CG+CPYCR+ IVVN
Sbjct: 241 ICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]
BLAST of Cp4.1LG04g07640 vs. TrEMBL
Match: A0A061E823_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.1e-46
Identity = 122/264 (46.21%), Postives = 162/264 (61.36%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF++RR R+GR D+D  + S   DR+  Y RRHH  + NHR  ++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVGSRNN-INAN-IQNSLRPGLSGDSRLPGSVL 120
               RQ     +  + +RS  + + G S    +N +NA+ + +S RP L+ + RLPG+VL
Sbjct: 61  --HVRQFSSRASSQSQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMIS-----LEDADRLRLVPAVS 180
           LAR RL ERLRG S  T  N LV+A DW  EIS   S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVST--NRLVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHK 240
           K+PPGL+QEA++ L LE F   E  +D D  + R S DCSICL+SF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLEQWIRTCGECPYCRQRIV 258
           FH ACL+ W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 255

[Close]
BLAST of Cp4.1LG04g07640 vs. TrEMBL
Match: A0A061E052_THECC (RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.0e-45
Identity = 123/264 (46.59%), Postives = 163/264 (61.74%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF++RR R+GR D+D  + S   DR+  Y RRHH  + NHR  ++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVGSRNN-INAN-IQNSLRPGLSGDSRLPGSVL 120
              R+ S R  +    +RS  + + G S    +N +NA+ + +S RP L+ + RLPG+VL
Sbjct: 61  -HVRQFSSRASSQS--ERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMIS-----LEDADRLRLVPAVS 180
           LAR RL ERLRG S  T  N LV+A DW  EIS   S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVST--NRLVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHK 240
           K+PPGL+QEA++ L LE F   E  +D D  + R S DCSICL+SF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLEQWIRTCGECPYCRQRIV 258
           FH ACL+ W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 254

[Close]
BLAST of Cp4.1LG04g07640 vs. TAIR10
Match: AT1G49850.1 (AT1G49850.1 RING/U-box superfamily protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-39
Identity = 101/258 (39.15%), Postives = 136/258 (52.71%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHG-HNGNHRRVLNACGAFRRS 60
           MTSASELF +RR R GR+D  L  D+     H  +  R HG H+ N R   + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFLNPLAVDRSPAQSESGIS-VGSRNNINANIQNSLRPGLSGDSRLPGSVL 120
           + + RR    F +P+     P +   G S   + ++ +   Q+S    L+G  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPG 180
           LAR+RLFERLRG S  +       +LD   E S        +     L++    +K+P G
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSIDGDPIFQLAGLQVTYECNKKPQG 180

Query: 181 LSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHAC 240
           L+Q+AINCL  + F   E        +     DCSICL+SF  GD LI LPC H FH +C
Sbjct: 181 LTQDAINCLHRQTFSSAE--------VKSEMRDCSICLESFTKGDMLISLPCTHSFHSSC 240

Query: 241 LEQWIRTCGECPYCRQRI 257
           L  W+R CG+CP CR+ I
Sbjct: 241 LNPWLRACGDCPCCRRAI 247

[Close]
BLAST of Cp4.1LG04g07640 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-12
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1 

Query: 206 IRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRI 257
           +R   DC+ICLD F  G+ L+HLPC HKFH  CL  W+ T   CPYCR  I
Sbjct: 144 VREQQDCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

[Close]
BLAST of Cp4.1LG04g07640 vs. TAIR10
Match: AT5G24870.1 (AT5G24870.1 RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 69/260 (26.54%), Postives = 116/260 (44.62%), Query Frame = 1 

Query: 26  SEPP-DRHLQYQRRHHGHNGNHRRVLNACGAFRRSSLQERRQSPR-----FLNPLAVDRS 85
           SEP  +R+L   R +   + + RR     G   R+      Q+PR      LNP    RS
Sbjct: 257 SEPRRNRNLPSVRDNSVVSSSTRRSTGYYGRTGRAGAVATLQAPRPPTRADLNP---SRS 316

Query: 86  PAQSESGISVGSRN-NINANIQNSLRPGLSGDSRLPGS-----------------VLLAR 145
              S S ++  SR  + N  +++ + PG   ++ L  S                 VLLA 
Sbjct: 317 AEASRSPLNSYSRPISSNGRLRSLMMPGSPSEAGLSRSLMNRDTFRRYNMNGVAEVLLAL 376

Query: 146 ERL-------FERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSK 205
           ER+       +E+L    +    NG+    D   ++   R  + ++   + L L   +  
Sbjct: 377 ERIEQDEELTYEQLAVLETNLFLNGMSSFHDQHRDM---RLDIDNMSYEELLALEEKMGT 436

Query: 206 RPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSN-DCSICLDSFIDGDKLIHLPCKHK 254
               LS+EA+    L+  I   +   DD+ + +  +  CSIC + ++DGD++  LPC+HK
Sbjct: 437 VSTALSEEAL-LKSLKSSIYRPNDESDDICLNKDDDVKCSICQEEYVDGDEVGTLPCQHK 496

[Close]
BLAST of Cp4.1LG04g07640 vs. TAIR10
Match: AT5G10650.1 (AT5G10650.1 RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 44/183 (24.04%), Postives = 88/183 (48.09%), Query Frame = 1 

Query: 79  SPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLARERL-------FERLRGA 138
           SP +++   S+ +R+ ++    N +             VLLA ER+       +E+L   
Sbjct: 349 SPTEADPSSSLVNRDGLSHYNMNGI-----------AEVLLALERIEHDEELTYEQLASI 408

Query: 139 SSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLSQEAINCLQLER 198
            +    +G+    D   ++   R  + ++   + L L   +      LS+EA++   L++
Sbjct: 409 ETNLFSSGMFRFYDQHRDM---RLDIDNMSYEELLALGDKMGTVSTALSEEALS-RSLKQ 468

Query: 199 FIDIEHIIDDDLTMIRTSN-DCSICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECP 254
            I  E      +++ +  +  CSIC + ++DGD+L  +PC+H +H +C++QW+R    CP
Sbjct: 469 SIYQETDETGSISLYKDDDIKCSICQEEYVDGDELGTIPCQHMYHVSCVQQWLRMKNWCP 516

[Close]
BLAST of Cp4.1LG04g07640 vs. TAIR10
Match: AT5G55970.1 (AT5G55970.1 RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09
Identity = 24/67 (35.82%), Postives = 36/67 (53.73%), Query Frame = 1 

Query: 188 QLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCG 247
           + +R  D     D D   +    +C ICL  + D +++  LPC HKFH  C++QW+R   
Sbjct: 273 KFKRIDDSASDSDSDSATVTDDPECCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIIS 332

Query: 248 ECPYCRQ 255
            CP C+Q
Sbjct: 333 CCPLCKQ 339

[Close]
BLAST of Cp4.1LG04g07640 vs. NCBI nr
Match: gi|449438341|ref|XP_004136947.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus])

HSP 1 Score: 415.2 bits (1066), Expect = 8.2e-113
Identity = 205/259 (79.15%), Postives = 224/259 (86.49%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF+ RRYR GRTD+DLGLDSEPPDRHLQYQRRHHGHNGNHRR LN+CG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120
           LQERRQSPRF NPL+VDRSPAQS+S  SV SRNNIN N QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180
           RERL ERLRGASSPT RN LVEA + +PE + SRSQ ISL DADR+RLV   SKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240
           Q+AIN LQLE FI+ +HII+D +  I TS DCSICL+SF DGDKLIHLPC+HKFHH CL+
Sbjct: 181 QDAINRLQLEVFINTDHIINDGVMTI-TSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 QWIRTCGECPYCRQRIVVN 260
           +WIRTCGECPYCRQ I +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]
BLAST of Cp4.1LG04g07640 vs. NCBI nr
Match: gi|659110057|ref|XP_008455026.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo])

HSP 1 Score: 414.5 bits (1064), Expect = 1.4e-112
Identity = 207/256 (80.86%), Postives = 224/256 (87.50%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF+ RRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRR LN+CG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120
           LQERRQSPRF NPL+VDRSPAQS+S  SVGSRNNIN N QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180
           RERL ERLRGASSPT RN LVEA + +PEIS SRSQ ISL DADR+RLV   SKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240
           Q+AIN LQLE FI+ + IIDDD+  I TS DCSICL+SF DGDKLIHLPC+HKFHHACL+
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDVMTI-TSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240

Query: 241 QWIRTCGECPYCRQRI 257
           +WIRTCGECPYCRQ I
Sbjct: 241 RWIRTCGECPYCRQHI 255

[Close]
BLAST of Cp4.1LG04g07640 vs. NCBI nr
Match: gi|567860412|ref|XP_006422860.1| (hypothetical protein CICLE_v10028999mg [Citrus clementina])

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 132/286 (46.15%), Postives = 168/286 (58.74%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF++RR R+GR D DLGLDS   +R L + RRHH HN NHR  L+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVG-SRNNINANIQNSLR-PGLSGDSRLPGSVL 120
               R  P    P   +R+    + G S   S N +N+ +  S   P  +G+ RLPG+VL
Sbjct: 61  --HARHLPH--RPSPSERASVWLDQGTSQHVSSNPMNSEVSRSTSSPSWNGNERLPGTVL 120

Query: 121 LARERLFERLRGAS-SPTIRNG------------------LVEALDWSPEISASRSQMIS 180
           LAR RL ERLRG S S   R+G                  LV+A DW+ E SA  S + S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 ------LEDADRLRLVPAVSKRPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCS 240
                     +RL+LV    K+PPGL+QEA++CL +E F      I  +    +TS DCS
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFA--ISSEGEASKTSLDCS 240

Query: 241 ICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIVVN 260
           ICL+SF DGD+LI LPCKH+FH  CL+ W+R+CG+CPYCR+ IVVN
Sbjct: 241 ICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]
BLAST of Cp4.1LG04g07640 vs. NCBI nr
Match: gi|641838909|gb|KDO57845.1| (hypothetical protein CISIN_1g023376mg [Citrus sinensis])

HSP 1 Score: 207.2 bits (526), Expect = 3.4e-50
Identity = 132/286 (46.15%), Postives = 170/286 (59.44%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF++RR R+GR D DLGLDS   +R L + RRHH HN NHR  L+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVG-SRNNINANI-QNSLRPGLSGDSRLPGSVL 120
              R  S R   P   +R+    + G S   S N +N+ + + +  P  +G+ RLPG+VL
Sbjct: 61  -HARHLSHR---PSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERLPGTVL 120

Query: 121 LARERLFERLRGAS-SPTIRNG------------------LVEALDWSPEISASRSQMIS 180
           LAR RL ERLRG S S   R+G                  LV+A DW+ E SA  S + S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 ------LEDADRLRLVPAVSKRPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCS 240
                     +RL+LV    K+PPGL+QEA++CL +E F      I  +    +TS DCS
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFA--ISSEGEASKTSLDCS 240

Query: 241 ICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIVVN 260
           ICL+SF DGD+LI LPCKH+FH  CL+ W+R+CG+CPYCR+ IVVN
Sbjct: 241 ICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]
BLAST of Cp4.1LG04g07640 vs. NCBI nr
Match: gi|568867241|ref|XP_006486949.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis])

HSP 1 Score: 205.7 bits (522), Expect = 9.9e-50
Identity = 131/286 (45.80%), Postives = 169/286 (59.09%), Query Frame = 1 

Query: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60
           MTSASELF++RR R+GR D DLGLDS   +R L + RRHH HN NHR  L+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVG-SRNNINANI-QNSLRPGLSGDSRLPGSVL 120
              R  S R   P   +R+    + G S   S N +N+ + + +  P  +G+ RLPG+VL
Sbjct: 61  -HARHLSHR---PSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERLPGTVL 120

Query: 121 LARERLFERLRGAS-SPTIRNG------------------LVEALDWSPEISASRSQMIS 180
           LAR RL ERLRG S S   R+G                  LV+A DW+ E S   S + S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSNNNQRGNIFGDELRLVDAGDWAAETSTGWSAVSS 180

Query: 181 ------LEDADRLRLVPAVSKRPPGLSQEAINCLQLERFIDIEHIIDDDLTMIRTSNDCS 240
                     +RL+LV    K+PPGL+QEA++CL +E F      I  +    +TS DCS
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEVFNSFA--ISSEGEASKTSLDCS 240

Query: 241 ICLDSFIDGDKLIHLPCKHKFHHACLEQWIRTCGECPYCRQRIVVN 260
           ICL+SF DGD+LI LPCKH+FH  CL+ W+R+CG+CPYCR+ IVVN
Sbjct: 241 ICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHY1A_ARATH3.9e-3839.15Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2... [more]
ZNRF3_MOUSE2.2e-0942.00E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=1 SV=1[more]
ZNRF3_HUMAN2.2e-0942.00E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3[more]
ZNRF3_XENTR2.9e-0942.00E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1[more]
ZNRF3_DANRE2.9e-0942.00E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2[more]
BLAST of Cp4.1LG04g07640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6D2_CUCSA5.7e-11379.15Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1[more]
V4SB77_9ROSI1.1e-5046.15Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1[more]
A0A067EVC3_CITSI2.4e-5046.15Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1[more]
A0A061E823_THECC2.1e-4646.21RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007... [more]
A0A061E052_THECC1.0e-4546.59RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007... [more]
BLAST of Cp4.1LG04g07640 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49850.12.2e-3939.15 RING/U-box superfamily protein[more]
AT2G15580.11.8e-1254.90 RING/U-box superfamily protein[more]
AT5G24870.11.4e-0926.54 RING/U-box superfamily protein[more]
AT5G10650.11.4e-0924.04 RING/U-box superfamily protein[more]
AT5G55970.12.4e-0935.82 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG04g07640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438341|ref|XP_004136947.1|8.2e-11379.15PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus][more]
gi|659110057|ref|XP_008455026.1|1.4e-11280.86PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo][more]
gi|567860412|ref|XP_006422860.1|1.5e-5046.15hypothetical protein CICLE_v10028999mg [Citrus clementina][more]
gi|641838909|gb|KDO57845.1|3.4e-5046.15hypothetical protein CISIN_1g023376mg [Citrus sinensis][more]
gi|568867241|ref|XP_006486949.1|9.9e-5045.80PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07640.1Cp4.1LG04g07640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 211..253
score: 8.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 212..252
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 212..253
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 209..256
score: 1.3
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 149..259
score: 3.4E-38coord: 35..49
score: 3.4
NoneNo IPR availablePANTHERPTHR14155:SF182SUBFAMILY NOT NAMEDcoord: 149..259
score: 3.4E-38coord: 35..49
score: 3.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 197..258
score: 1.08

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07640Cucsa.219270Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07640CmaCh11G017080Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07640CmoCh11G014100Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07640Cla016082Watermelon (97103) v1cpewmB665
Cp4.1LG04g07640Csa7G071510Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07640MELO3C018508Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07640ClCG02G006670Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g07640CSPI07G06980Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07640Lsi03G005640Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07640MELO3C018508.2Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07640CsaV3_7G007960Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07640Bhi05G000887Wax gourdcpewgoB0847
Cp4.1LG04g07640CsGy7G006520Cucumber (Gy14) v2cgybcpeB969
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07640Cucumber (Chinese Long) v3cpecucB0834
Cp4.1LG04g07640Cucumber (Chinese Long) v3cpecucB0847
Cp4.1LG04g07640Wax gourdcpewgoB0860
Cp4.1LG04g07640Wax gourdcpewgoB0879
Cp4.1LG04g07640Cucurbita pepo (Zucchini)cpecpeB133
Cp4.1LG04g07640Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g07640Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07640Cucurbita pepo (Zucchini)cpecpeB497
Cp4.1LG04g07640Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG04g07640Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07640Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07640Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07640Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07640Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07640Bottle gourd (USVL1VR-Ls)cpelsiB552
Cp4.1LG04g07640Watermelon (Charleston Gray)cpewcgB624
Cp4.1LG04g07640Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g07640Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g07640Melon (DHL92) v3.6.1cpemedB771
Cp4.1LG04g07640Silver-seed gourdcarcpeB0266
Cp4.1LG04g07640Silver-seed gourdcarcpeB0272
Cp4.1LG04g07640Silver-seed gourdcarcpeB0409
Cp4.1LG04g07640Silver-seed gourdcarcpeB0529
Cp4.1LG04g07640Silver-seed gourdcarcpeB0639