Lsi03G005640 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G005640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RING/U-box superfamily protein
Location	chr03 : 6818230 .. 6821081 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGCTCCAAGCTCTAAAATTATTACAACACAAAATAAATAAAAAGATAAAGATAAGAACAACCAATTCATTTGTTAAGTTCCCTAATTCCAACCCAATCCAATCCAATCCACGCTCGAGTTTTTCTGTTAGCGCAAGTAAGTAACCAAGCAAATCCCCTCCTTTACCTTCAACTTCCATCCACATTTCTCCGAAATTTCTTCCCCATTTCTTCCCAGTTTCAAACCCTTTTCCATTTTTCCTTTATTAATTTCAGATTGTACGCAAAATTTGAGTTAAACAAACTTTAGGACCGGCTAAGCCCGTGCATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTGTAAGGAAGGATTAAACATTTTTTTTTTTATCAAATTCTGGGTTTGTGTTATTTGAGAAATTGCTATTTACTTCGATGAAGTCTATATTAACGGCTGAGAATAGTTGGAGTTGGAAGAACTGTTCATATTTTGTTTTGATTGGGAATTTCTTAGCGTTTCTGACCAAAAATTTCTTCTAAACTGTAGAACCAGTTGGGGATATGTTGAAAAGATATTATTTGCCCTAATTTATCAGCTTAGGTTGTTGGGAATTGGGATGGTTTTATATGGTTCATGCCCTAAGAATAATGTCTTTTGCACTTAACTATGGATTGATCCAACAAATAACTCTAGTCCACCTAGGTCTGCTCCATAAATGTTTGGTTTTTGGTTTTTGAAAATTAAACCTTGTAAAGGCTGTTTCTAAGTTCCAAATATGAACTTTGTTTTGTTAATGTTTTGAAAATCCAAGCTTTAAAGAAAAAAATAGTTTCTAGAAGCTTGTTTTTGTTTCTAAAATTTAGCTATAGATTCAAATGTTTTCTTATGAAAGATGAAAACTATTGGAAAGAAATCGTGAGAAAACAAGTGCAATTTTCAAAAACTAAATGGTTATCAAACAGATTTCTAGCTAAGCTATTGGTTTAGTGATTGTTGTTATTCTTCAGTGATAATTCTGTTTTCCATTGCTATGAACTACTTAGAACCATAATAAATCAAATTGCAGAACTTGGTACGGAGAGTGATGATGAATAGAACTTTTCCAGTTTTATTAGCTTCTTAATGCTACTTGGCTATTAAACCATGATCTAATTGGTATGTGATCATGGAGACATAACTTGGTTACAACTTACAATTAAGGATGCTTTTCTATATTTCTTTTCTGGGTTGTCATCTCTGTCTGAATGTTAAATTCAATTACTTTGGAGGCATTAACACTGTGTCTTCATTGTAGCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGTTAGTTCCTATTGTCGTGTACTTGTTGTTTACACTACTATGCAGAAAAATTTGGGACTTCAATTGGAATATTCCATGTCATTTCTCTAAAGACATCTTTCTAGATTTAAAGGCATATTTGGAAGTGATTTTAAAATCATTATAATCACTTTTGTCAGGTTCAATATCACTTTAAAACATGTCTTTAATTATACAAAATCAATGTAATGTTTGATTTGACACTTTTAAACGTGATTTTCATAAAAATCAAAGTTGATTTTGAATCATTAAAAGAACACTTGTAAACATATGCTGTGGTATGTATCTACTTGTATGATTTTCTTTGTTGATAGGGAGTTGGTTGTATTGTATACTCAGAAAATAGAATCCAATTCCAATAAACTCAAAGTTTCTACAAGTTATGTCCTAGATTTTAGCGTTCTTTATAAACTATATTTATGGATAGCAAATTGGAATTGAAAATTGTTACTAGTTGGCCATCTGTATATTGAAAACTGGAATAGATCCCAGCTCTGTGCTACTGCTAACCGAATTAGTTTATTCATCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAATCTTTTCTAACCCGTTTTCGCAACTTGGGATTTTCCTGTATGTGTAAAAAGCTTAGAGACTGTCAATTATTCCAAGTTGTGGTATTAATCTTTATAGTTATAGTTGATGTTTATACTTGTATCCTTCTAAGTGACTGCGTTGACTCCAAATTGTGAGGCTTTTTTTACTAGCCAAGAGGTTTGACTGCTTTGTAACTCTTCTTTTTATTGGTTTTAGTTGAGAAAAAGGACACTGATTTTTTAATATAAAGAATGAGGAAGCTGTTCCAAAATACTACCATTCATTTTG

mRNA sequence

CTTAGCTCCAAGCTCTAAAATTATTACAACACAAAATAAATAAAAAGATAAAGATAAGAACAACCAATTCATTTGTTAAGTTCCCTAATTCCAACCCAATCCAATCCAATCCACGCTCGAGTTTTTCTGTTAGCGCAAATTGTACGCAAAATTTGAGTTAAACAAACTTTAGGACCGGCTAAGCCCGTGCATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAATCTTTTCTAACCCGTTTTCGCAACTTGGGATTTTCCTGTATGTGTAAAAAGCTTAGAGACTGTCAATTATTCCAAGTTGTGGTATTAATCTTTATAGTTATAGTTGATGTTTATACTTGTATCCTTCTAAGTGACTGCGTTGACTCCAAATTGTGAGGCTTTTTTTACTAGCCAAGAGGTTTGACTGCTTTGTAACTCTTCTTTTTATTGGTTTTAGTTGAGAAAAAGGACACTGATTTTTTAATATAAAGAATGAGGAAGCTGTTCCAAAATACTACCATTCATTTTG

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAA

Protein sequence

MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSSLQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN

Homology

[Close]

BLAST of Lsi03G005640 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-37
Identity = 101/255 (39.61%), Postives = 137/255 (53.73%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHG-HNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  R HG H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSVTSVG-SRNNINANTQNSLRTGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRRF---FHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPG 180
           LAR+RL ERLRG S  ++  +     D   E S        +     +++    +K+P G
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSIDGDPIFQLAGLQVTYECNKKPQG 180

Query: 181 LSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           L+QDAIN L    F         + +  +DCSICLESFT GD LI LPC H FH +CL+ 
Sbjct: 181 LTQDAINCLHRQTF-----SSAEVKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNP 240

Query: 241 WIRTCGECPYCRQHI 254
           W+R CG+CP CR+ I
Sbjct: 241 WLRACGDCPCCRRAI 247

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BLAST of Lsi03G005640 vs. Swiss-Prot
Match: ZNRF3_HUMAN (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-10
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 199 DVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           D   ++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 283 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338

[Close]

BLAST of Lsi03G005640 vs. Swiss-Prot
Match: ZNRF3_XENTR (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-10
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 199 DVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           D   ++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 256 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311

[Close]

BLAST of Lsi03G005640 vs. Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-10
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 175 RPPGLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHA 234
           +P GL+++ I+ L    F    ND +      K CS+C+  +T+G+KL  LPC H++H  
Sbjct: 559 QPRGLTKEQIDNLSTRNFGE--NDAL------KTCSVCITEYTEGNKLRKLPCSHEYHVH 618

Query: 235 CLDRWIRTCGECPYCRQHIVV 256
           C+DRW+     CP CR+ ++V
Sbjct: 619 CIDRWLSENSTCPICRRAVLV 631

[Close]

BLAST of Lsi03G005640 vs. Swiss-Prot
Match: ZNRF3_DANRE (E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 199 DVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           D   ++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 257 DSVSSSSTSDCAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNII 312

[Close]

BLAST of Lsi03G005640 vs. TrEMBL
Match: A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 2.6e-126
Identity = 231/259 (89.19%), Postives = 239/259 (92.28%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSV SRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVE S+G+PE +TSRSQRISLVD DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   IIND V MT TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]

BLAST of Lsi03G005640 vs. TrEMBL
Match: A0A067EVC3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.1e-47
Identity = 129/289 (44.64%), Postives = 171/289 (59.17%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSV-TSVGSRNNINANTQNS-LRTGLS-----GDSRL 120
                        LS   SP++  SV    G+  ++++N  NS +  G S     G+ RL
Sbjct: 61  HARH---------LSHRPSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEIS--- 180
           PG+VLLAR RLLERLRG S S   R+                   LV+  D + E S   
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGW 180

Query: 181 ---TSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSK 240
              +S    +    T+R++LV    K+PPGL+Q+A++ L + +F +  I+ +   + TS 
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSL 240

Query: 241 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of Lsi03G005640 vs. TrEMBL
Match: V4SB77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.0e-47
Identity = 128/284 (45.07%), Postives = 168/284 (59.15%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRS- 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVG-SRNNINANTQNSLRT-GLSGDSRLPGSVL 120
               R  P    P   +R+    D  TS   S N +N+    S  +   +G+ RLPG+VL
Sbjct: 61  -PHARHLPH--RPSPSERASVWLDQGTSQHVSSNPMNSEVSRSTSSPSWNGNERLPGTVL 120

Query: 121 LARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEIS------TS 180
           LAR RLLERLRG S S   R+                   LV+  D + E S      +S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 RSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSKDCSIC 240
               +    T+R++LV    K+PPGL+Q+A++ L + +F +  I+ +   + TS DCSIC
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSIC 240

Query: 241 LESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           LESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 LESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of Lsi03G005640 vs. TrEMBL
Match: A0A061E823_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.3e-44
Identity = 123/262 (46.95%), Postives = 163/262 (62.21%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNN-INANT-QNSLRTGLSGDSRLPGSVL 120
               RQ     +  S +RS  + D  TS    +N +NA+   +S R  L+ + RLPG+VL
Sbjct: 61  --HVRQFSSRASSQSQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRIS-----LVDTDRMRLVPAPS 180
           LAR RLLERLRG S  T+R  LV+  D   EIST  S   S        T+R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLVVFIN-IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFH 240
           K+PPGL+Q+A++ L L VF +  ++ D  ++  S+DCSICLESF D D L  LPC H+FH
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGEVDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHRFH 240

Query: 241 HACLDRWIRTCGECPYCRQHIV 255
            ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 LACLDPWVRTCGDCPYCRRSIL 255

[Close]

BLAST of Lsi03G005640 vs. TrEMBL
Match: A0A061E052_THECC (RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 123/262 (46.95%), Postives = 164/262 (62.60%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNN-INANT-QNSLRTGLSGDSRLPGSVL 120
              R+ S R  +    +RS  + D  TS    +N +NA+   +S R  L+ + RLPG+VL
Sbjct: 61  -HVRQFSSRASS--QSERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRIS-----LVDTDRMRLVPAPS 180
           LAR RLLERLRG S  T+R  LV+  D   EIST  S   S        T+R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLVVFIN-IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFH 240
           K+PPGL+Q+A++ L L VF +  ++ D  ++  S+DCSICLESF D D L  LPC H+FH
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGEVDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHRFH 240

Query: 241 HACLDRWIRTCGECPYCRQHIV 255
            ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 LACLDPWVRTCGDCPYCRRSIL 254

[Close]

BLAST of Lsi03G005640 vs. TAIR10
Match: AT1G49850.1 (AT1G49850.1 RING/U-box superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 101/255 (39.61%), Postives = 137/255 (53.73%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHG-HNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  R HG H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSVTSVG-SRNNINANTQNSLRTGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRRF---FHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPG 180
           LAR+RL ERLRG S  ++  +     D   E S        +     +++    +K+P G
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSIDGDPIFQLAGLQVTYECNKKPQG 180

Query: 181 LSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           L+QDAIN L    F         + +  +DCSICLESFT GD LI LPC H FH +CL+ 
Sbjct: 181 LTQDAINCLHRQTF-----SSAEVKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNP 240

Query: 241 WIRTCGECPYCRQHI 254
           W+R CG+CP CR+ I
Sbjct: 241 WLRACGDCPCCRRAI 247

[Close]

BLAST of Lsi03G005640 vs. TAIR10
Match: AT1G71980.1 (AT1G71980.1 Protease-associated (PA) RING/U-box zinc finger family protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-10
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 178 GLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 237
           G+S+  +  +  ++F +   D+ T  T    C+ICLE +T GDKL  LPC HKFH AC+D
Sbjct: 205 GMSRRLVKAMPSLIFSSFHEDNTTAFT----CAICLEDYTVGDKLRLLPCCHKFHAACVD 264

Query: 238 RWIRTCGE-CPYCRQ 252
            W+ +    CP C++
Sbjct: 265 SWLTSWRTFCPVCKR 275

[Close]

BLAST of Lsi03G005640 vs. TAIR10
Match: AT5G66070.2 (AT5G66070.2 RING/U-box superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-10
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1


Query: 178 GLSQDAINRLQLVVFINIINDDVTMTTTSKD---CSICLESFTDGDKLIHLP-CEHKFHH 237
           GL+ D++NR+            V +T TS +   CS+CL+ F  G+ +  LP C H FH 
Sbjct: 176 GLTGDSLNRIP----------KVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHL 235

Query: 238 ACLDRWIRTCGECPYCRQHI 254
            C+D+W+R    CP CR+H+
Sbjct: 236 PCIDKWLRRHASCPLCRRHL 245

[Close]

BLAST of Lsi03G005640 vs. TAIR10
Match: AT3G61180.1 (AT3G61180.1 RING/U-box superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-09
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1


Query: 208 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           +CSICL ++ DG +L  LPC H FH  C+D+W+R    CP C+ +I+ N
Sbjct: 322 ECSICLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCPLCKFNILKN 370

[Close]

BLAST of Lsi03G005640 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 51/179 (28.49%), Postives = 79/179 (44.13%), Query Frame = 1


Query: 78  RSPAQSDSVTSVGSRNNINANTQNSLRT---GLSGDSRLPGSVLLARERLLERLRGASSP 137
           R P+ S   T+  S     + ++ S+R    G   D +L G+   A++RL +RLR    P
Sbjct: 41  RRPSFSLYTTNHESHQAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR--IPP 100

Query: 138 TSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFIN 197
            +R       D   ++   + + +  + T+ + L     K+  G   +   R        
Sbjct: 101 RTRQ---NGKDKGNKLEQGKGKPLGDLPTEVVGL-----KKSRGRLMEWFKR-------- 160

Query: 198 IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 254
                       +DC+ICL+ F  G+ L+HLPC HKFH  CL  W+ T   CPYCR  I
Sbjct: 161 -------RVREQQDCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: gi|449438341|ref|XP_004136947.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus])

HSP 1 Score: 459.5 bits (1181), Expect = 3.8e-126
Identity = 231/259 (89.19%), Postives = 239/259 (92.28%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSV SRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVE S+G+PE +TSRSQRISLVD DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   IIND V MT TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: gi|659110057|ref|XP_008455026.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo])

HSP 1 Score: 459.5 bits (1181), Expect = 3.8e-126
Identity = 232/256 (90.62%), Postives = 240/256 (93.75%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSVGSRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVE S+G+PEISTSRSQRISL+D DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   II+DDV MT TS DCSICLESFTDGDKLIHLPCEHKFHHACLD
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240

Query: 241 RWIRTCGECPYCRQHI 254
           RWIRTCGECPYCRQHI
Sbjct: 241 RWIRTCGECPYCRQHI 255

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: gi|568867241|ref|XP_006486949.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 131/289 (45.33%), Postives = 171/289 (59.17%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSV-TSVGSRNNINANTQNS-LRTGLS-----GDSRL 120
                        LS   SP++  SV    G+  ++++N  NS +  G S     G+ RL
Sbjct: 61  HARH---------LSHRPSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEISTSR 180
           PG+VLLAR RLLERLRG S S   R+                   LV+  D + E ST  
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSNNNQRGNIFGDELRLVDAGDWAAETSTGW 180

Query: 181 S------QRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSK 240
           S        +    T+R++LV    K+PPGL+Q+A++ L + VF +  I+ +   + TS 
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEVFNSFAISSEGEASKTSL 240

Query: 241 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: gi|641838909|gb|KDO57845.1| (hypothetical protein CISIN_1g023376mg [Citrus sinensis])

HSP 1 Score: 196.4 bits (498), Expect = 5.9e-47
Identity = 129/289 (44.64%), Postives = 171/289 (59.17%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSV-TSVGSRNNINANTQNS-LRTGLS-----GDSRL 120
                        LS   SP++  SV    G+  ++++N  NS +  G S     G+ RL
Sbjct: 61  HARH---------LSHRPSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEIS--- 180
           PG+VLLAR RLLERLRG S S   R+                   LV+  D + E S   
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGW 180

Query: 181 ---TSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSK 240
              +S    +    T+R++LV    K+PPGL+Q+A++ L + +F +  I+ +   + TS 
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSL 240

Query: 241 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: gi|567860412|ref|XP_006422860.1| (hypothetical protein CICLE_v10028999mg [Citrus clementina])

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 128/284 (45.07%), Postives = 168/284 (59.15%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRS- 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVG-SRNNINANTQNSLRT-GLSGDSRLPGSVL 120
               R  P    P   +R+    D  TS   S N +N+    S  +   +G+ RLPG+VL
Sbjct: 61  -PHARHLPH--RPSPSERASVWLDQGTSQHVSSNPMNSEVSRSTSSPSWNGNERLPGTVL 120

Query: 121 LARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEIS------TS 180
           LAR RLLERLRG S S   R+                   LV+  D + E S      +S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 RSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSKDCSIC 240
               +    T+R++LV    K+PPGL+Q+A++ L + +F +  I+ +   + TS DCSIC
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSIC 240

Query: 241 LESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           LESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 LESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

The following BLAST results are available for this feature:

BLAST of Lsi03G005640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHY1A_ARATH	1.9e-37	39.61	Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2...	[more]
ZNRF3_HUMAN	5.8e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3	[more]
ZNRF3_XENTR	7.6e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1	[more]
RNF12_XENTR	7.6e-10	37.04	E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1	[more]
ZNRF3_DANRE	9.9e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2	[more]

BLAST of Lsi03G005640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D2_CUCSA	2.6e-126	89.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1	[more]
A0A067EVC3_CITSI	4.1e-47	44.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1	[more]
V4SB77_9ROSI	7.0e-47	45.07	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1	[more]
A0A061E823_THECC	3.3e-44	46.95	RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007...	[more]
A0A061E052_THECC	2.1e-43	46.95	RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007...	[more]

BLAST of Lsi03G005640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49850.1	1.1e-38	39.61	RING/U-box superfamily protein	[more]
AT1G71980.1	2.8e-10	40.00	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT5G66070.2	6.2e-10	37.50	RING/U-box superfamily protein	[more]
AT3G61180.1	1.0e-09	46.94	RING/U-box superfamily protein	[more]
AT2G15580.1	1.8e-09	28.49	RING/U-box superfamily protein	[more]

BLAST of Lsi03G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438341\|ref\|XP_004136947.1\|	3.8e-126	89.19	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus]	[more]
gi\|659110057\|ref\|XP_008455026.1\|	3.8e-126	90.63	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo]	[more]
gi\|568867241\|ref\|XP_006486949.1\|	1.2e-47	45.33	PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis]	[more]
gi\|641838909\|gb\|KDO57845.1\|	5.9e-47	44.64	hypothetical protein CISIN_1g023376mg [Citrus sinensis]	[more]
gi\|567860412\|ref\|XP_006422860.1\|	1.0e-46	45.07	hypothetical protein CICLE_v10028999mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G005640.1	Lsi03G005640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 208..250 score: 4.6
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 209..249 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 209..250 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 206..253 score: 9.3
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 35..49 score: 1.9E-40coord: 174..256 score: 1.9
None	No IPR available	PANTHER	PTHR14155:SF182	SUBFAMILY NOT NAMED	coord: 35..49 score: 1.9E-40coord: 174..256 score: 1.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 208..255 score: 1.58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G005640	Csa7G071510	Cucumber (Chinese Long) v2	culsiB522
Lsi03G005640	CSPI07G06980	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G005640	Cucsa.219270	Cucumber (Gy14) v1	cgylsiB367
Lsi03G005640	CmaCh11G017080	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G005640	CmoCh11G014100	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G005640	Cla016082	Watermelon (97103) v1	lsiwmB268
Lsi03G005640	MELO3C018508	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G005640	ClCG02G006670	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G005640	MELO3C018508.2	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G005640	Cla97C02G033660	Watermelon (97103) v2	lsiwmbB226
Lsi03G005640	Bhi05G000887	Wax gourd	lsiwgoB317
Lsi03G005640	Cp4.1LG04g07640	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G005640	CsGy7G006520	Cucumber (Gy14) v2	cgyblsiB488
Lsi03G005640	CsaV3_7G007960	Cucumber (Chinese Long) v3	cuclsiB555

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G005640	Silver-seed gourd	carlsiB167
Lsi03G005640	Silver-seed gourd	carlsiB267
Lsi03G005640	Silver-seed gourd	carlsiB342
Lsi03G005640	Silver-seed gourd	carlsiB411
Lsi03G005640	Cucumber (Chinese Long) v3	cuclsiB128
Lsi03G005640	Cucumber (Chinese Long) v3	cuclsiB300
Lsi03G005640	Watermelon (97103) v2	lsiwmbB237
Lsi03G005640	Watermelon (97103) v2	lsiwmbB244
Lsi03G005640	Wax gourd	lsiwgoB307
Lsi03G005640	Wax gourd	lsiwgoB320
Lsi03G005640	Wax gourd	lsiwgoB323
Lsi03G005640	Wax gourd	lsiwgoB344
Lsi03G005640	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G005640	Bottle gourd (USVL1VR-Ls)	lsilsiB130
Lsi03G005640	Bottle gourd (USVL1VR-Ls)	lsilsiB135
Lsi03G005640	Cucumber (Gy14) v1	cgylsiB568
Lsi03G005640	Cucurbita maxima (Rimu)	cmalsiB309
Lsi03G005640	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G005640	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G005640	Cucurbita maxima (Rimu)	cmalsiB723
Lsi03G005640	Cucurbita moschata (Rifu)	cmolsiB411
Lsi03G005640	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G005640	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G005640	Cucurbita moschata (Rifu)	cmolsiB714
Lsi03G005640	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G005640	Cucurbita pepo (Zucchini)	cpelsiB348
Lsi03G005640	Cucurbita pepo (Zucchini)	cpelsiB454
Lsi03G005640	Wild cucumber (PI 183967)	cpilsiB278
Lsi03G005640	Cucumber (Chinese Long) v2	culsiB116
Lsi03G005640	Cucumber (Chinese Long) v2	culsiB279
Lsi03G005640	Melon (DHL92) v3.5.1	lsimeB258
Lsi03G005640	Melon (DHL92) v3.5.1	lsimeB272
Lsi03G005640	Watermelon (Charleston Gray)	lsiwcgB243
Lsi03G005640	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G005640	Watermelon (Charleston Gray)	lsiwcgB251
Lsi03G005640	Watermelon (97103) v1	lsiwmB245
Lsi03G005640	Watermelon (97103) v1	lsiwmB247
Lsi03G005640	Watermelon (97103) v1	lsiwmB256
Lsi03G005640	Cucumber (Gy14) v2	cgyblsiB103
Lsi03G005640	Melon (DHL92) v3.6.1	lsimedB271
Lsi03G005640	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G005640	Melon (DHL92) v3.6.1	lsimedB285