Lsi03G005640.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G005640.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RING/U-box superfamily protein
Location	chr03 : 6818230 .. 6821081 (-)
Sequence length	1250

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGCTCCAAGCTCTAAAATTATTACAACACAAAATAAATAAAAAGATAAAGATAAGAACAACCAATTCATTTGTTAAGTTCCCTAATTCCAACCCAATCCAATCCAATCCACGCTCGAGTTTTTCTGTTAGCGCAAGTAAGTAACCAAGCAAATCCCCTCCTTTACCTTCAACTTCCATCCACATTTCTCCGAAATTTCTTCCCCATTTCTTCCCAGTTTCAAACCCTTTTCCATTTTTCCTTTATTAATTTCAGATTGTACGCAAAATTTGAGTTAAACAAACTTTAGGACCGGCTAAGCCCGTGCATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTGTAAGGAAGGATTAAACATTTTTTTTTTTATCAAATTCTGGGTTTGTGTTATTTGAGAAATTGCTATTTACTTCGATGAAGTCTATATTAACGGCTGAGAATAGTTGGAGTTGGAAGAACTGTTCATATTTTGTTTTGATTGGGAATTTCTTAGCGTTTCTGACCAAAAATTTCTTCTAAACTGTAGAACCAGTTGGGGATATGTTGAAAAGATATTATTTGCCCTAATTTATCAGCTTAGGTTGTTGGGAATTGGGATGGTTTTATATGGTTCATGCCCTAAGAATAATGTCTTTTGCACTTAACTATGGATTGATCCAACAAATAACTCTAGTCCACCTAGGTCTGCTCCATAAATGTTTGGTTTTTGGTTTTTGAAAATTAAACCTTGTAAAGGCTGTTTCTAAGTTCCAAATATGAACTTTGTTTTGTTAATGTTTTGAAAATCCAAGCTTTAAAGAAAAAAATAGTTTCTAGAAGCTTGTTTTTGTTTCTAAAATTTAGCTATAGATTCAAATGTTTTCTTATGAAAGATGAAAACTATTGGAAAGAAATCGTGAGAAAACAAGTGCAATTTTCAAAAACTAAATGGTTATCAAACAGATTTCTAGCTAAGCTATTGGTTTAGTGATTGTTGTTATTCTTCAGTGATAATTCTGTTTTCCATTGCTATGAACTACTTAGAACCATAATAAATCAAATTGCAGAACTTGGTACGGAGAGTGATGATGAATAGAACTTTTCCAGTTTTATTAGCTTCTTAATGCTACTTGGCTATTAAACCATGATCTAATTGGTATGTGATCATGGAGACATAACTTGGTTACAACTTACAATTAAGGATGCTTTTCTATATTTCTTTTCTGGGTTGTCATCTCTGTCTGAATGTTAAATTCAATTACTTTGGAGGCATTAACACTGTGTCTTCATTGTAGCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGTTAGTTCCTATTGTCGTGTACTTGTTGTTTACACTACTATGCAGAAAAATTTGGGACTTCAATTGGAATATTCCATGTCATTTCTCTAAAGACATCTTTCTAGATTTAAAGGCATATTTGGAAGTGATTTTAAAATCATTATAATCACTTTTGTCAGGTTCAATATCACTTTAAAACATGTCTTTAATTATACAAAATCAATGTAATGTTTGATTTGACACTTTTAAACGTGATTTTCATAAAAATCAAAGTTGATTTTGAATCATTAAAAGAACACTTGTAAACATATGCTGTGGTATGTATCTACTTGTATGATTTTCTTTGTTGATAGGGAGTTGGTTGTATTGTATACTCAGAAAATAGAATCCAATTCCAATAAACTCAAAGTTTCTACAAGTTATGTCCTAGATTTTAGCGTTCTTTATAAACTATATTTATGGATAGCAAATTGGAATTGAAAATTGTTACTAGTTGGCCATCTGTATATTGAAAACTGGAATAGATCCCAGCTCTGTGCTACTGCTAACCGAATTAGTTTATTCATCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAATCTTTTCTAACCCGTTTTCGCAACTTGGGATTTTCCTGTATGTGTAAAAAGCTTAGAGACTGTCAATTATTCCAAGTTGTGGTATTAATCTTTATAGTTATAGTTGATGTTTATACTTGTATCCTTCTAAGTGACTGCGTTGACTCCAAATTGTGAGGCTTTTTTTACTAGCCAAGAGGTTTGACTGCTTTGTAACTCTTCTTTTTATTGGTTTTAGTTGAGAAAAAGGACACTGATTTTTTAATATAAAGAATGAGGAAGCTGTTCCAAAATACTACCATTCATTTTG

mRNA sequence

CTTAGCTCCAAGCTCTAAAATTATTACAACACAAAATAAATAAAAAGATAAAGATAAGAACAACCAATTCATTTGTTAAGTTCCCTAATTCCAACCCAATCCAATCCAATCCACGCTCGAGTTTTTCTGTTAGCGCAAATTGTACGCAAAATTTGAGTTAAACAAACTTTAGGACCGGCTAAGCCCGTGCATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAATCTTTTCTAACCCGTTTTCGCAACTTGGGATTTTCCTGTATGTGTAAAAAGCTTAGAGACTGTCAATTATTCCAAGTTGTGGTATTAATCTTTATAGTTATAGTTGATGTTTATACTTGTATCCTTCTAAGTGACTGCGTTGACTCCAAATTGTGAGGCTTTTTTTACTAGCCAAGAGGTTTGACTGCTTTGTAACTCTTCTTTTTATTGGTTTTAGTTGAGAAAAAGGACACTGATTTTTTAATATAAAGAATGAGGAAGCTGTTCCAAAATACTACCATTCATTTTG

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAA

Protein sequence

MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSSLQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN

Homology

[Close]

BLAST of Lsi03G005640.1 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-37
Identity = 101/255 (39.61%), Postives = 137/255 (53.73%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHG-HNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  R HG H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSVTSVG-SRNNINANTQNSLRTGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRRF---FHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPG 180
           LAR+RL ERLRG S  ++  +     D   E S        +     +++    +K+P G
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSIDGDPIFQLAGLQVTYECNKKPQG 180

Query: 181 LSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           L+QDAIN L    F         + +  +DCSICLESFT GD LI LPC H FH +CL+ 
Sbjct: 181 LTQDAINCLHRQTF-----SSAEVKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNP 240

Query: 241 WIRTCGECPYCRQHI 254
           W+R CG+CP CR+ I
Sbjct: 241 WLRACGDCPCCRRAI 247

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BLAST of Lsi03G005640.1 vs. Swiss-Prot
Match: ZNRF3_HUMAN (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-10
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 199 DVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           D   ++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 283 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338

[Close]

BLAST of Lsi03G005640.1 vs. Swiss-Prot
Match: ZNRF3_XENTR (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-10
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 199 DVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           D   ++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 256 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311

[Close]

BLAST of Lsi03G005640.1 vs. Swiss-Prot
Match: RNF12_XENTR (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-10
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 175 RPPGLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHA 234
           +P GL+++ I+ L    F    ND +      K CS+C+  +T+G+KL  LPC H++H  
Sbjct: 559 QPRGLTKEQIDNLSTRNFGE--NDAL------KTCSVCITEYTEGNKLRKLPCSHEYHVH 618

Query: 235 CLDRWIRTCGECPYCRQHIVV 256
           C+DRW+     CP CR+ ++V
Sbjct: 619 CIDRWLSENSTCPICRRAVLV 631

[Close]

BLAST of Lsi03G005640.1 vs. Swiss-Prot
Match: ZNRF3_DANRE (E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 199 DVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           D   ++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 257 DSVSSSSTSDCAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNII 312

[Close]

BLAST of Lsi03G005640.1 vs. TrEMBL
Match: A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 2.6e-126
Identity = 231/259 (89.19%), Postives = 239/259 (92.28%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSV SRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVE S+G+PE +TSRSQRISLVD DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   IIND V MT TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]

BLAST of Lsi03G005640.1 vs. TrEMBL
Match: A0A067EVC3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.1e-47
Identity = 129/289 (44.64%), Postives = 171/289 (59.17%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSV-TSVGSRNNINANTQNS-LRTGLS-----GDSRL 120
                        LS   SP++  SV    G+  ++++N  NS +  G S     G+ RL
Sbjct: 61  HARH---------LSHRPSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEIS--- 180
           PG+VLLAR RLLERLRG S S   R+                   LV+  D + E S   
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGW 180

Query: 181 ---TSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSK 240
              +S    +    T+R++LV    K+PPGL+Q+A++ L + +F +  I+ +   + TS 
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSL 240

Query: 241 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of Lsi03G005640.1 vs. TrEMBL
Match: V4SB77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.0e-47
Identity = 128/284 (45.07%), Postives = 168/284 (59.15%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRS- 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVG-SRNNINANTQNSLRT-GLSGDSRLPGSVL 120
               R  P    P   +R+    D  TS   S N +N+    S  +   +G+ RLPG+VL
Sbjct: 61  -PHARHLPH--RPSPSERASVWLDQGTSQHVSSNPMNSEVSRSTSSPSWNGNERLPGTVL 120

Query: 121 LARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEIS------TS 180
           LAR RLLERLRG S S   R+                   LV+  D + E S      +S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 RSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSKDCSIC 240
               +    T+R++LV    K+PPGL+Q+A++ L + +F +  I+ +   + TS DCSIC
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSIC 240

Query: 241 LESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           LESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 LESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of Lsi03G005640.1 vs. TrEMBL
Match: A0A061E823_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.3e-44
Identity = 123/262 (46.95%), Postives = 163/262 (62.21%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNN-INANT-QNSLRTGLSGDSRLPGSVL 120
               RQ     +  S +RS  + D  TS    +N +NA+   +S R  L+ + RLPG+VL
Sbjct: 61  --HVRQFSSRASSQSQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRIS-----LVDTDRMRLVPAPS 180
           LAR RLLERLRG S  T+R  LV+  D   EIST  S   S        T+R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLVVFIN-IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFH 240
           K+PPGL+Q+A++ L L VF +  ++ D  ++  S+DCSICLESF D D L  LPC H+FH
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGEVDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHRFH 240

Query: 241 HACLDRWIRTCGECPYCRQHIV 255
            ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 LACLDPWVRTCGDCPYCRRSIL 255

[Close]

BLAST of Lsi03G005640.1 vs. TrEMBL
Match: A0A061E052_THECC (RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 123/262 (46.95%), Postives = 164/262 (62.60%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNN-INANT-QNSLRTGLSGDSRLPGSVL 120
              R+ S R  +    +RS  + D  TS    +N +NA+   +S R  L+ + RLPG+VL
Sbjct: 61  -HVRQFSSRASS--QSERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRIS-----LVDTDRMRLVPAPS 180
           LAR RLLERLRG S  T+R  LV+  D   EIST  S   S        T+R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLVVFIN-IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFH 240
           K+PPGL+Q+A++ L L VF +  ++ D  ++  S+DCSICLESF D D L  LPC H+FH
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGEVDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHRFH 240

Query: 241 HACLDRWIRTCGECPYCRQHIV 255
            ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 LACLDPWVRTCGDCPYCRRSIL 254

[Close]

BLAST of Lsi03G005640.1 vs. TAIR10
Match: AT1G49850.1 (AT1G49850.1 RING/U-box superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 101/255 (39.61%), Postives = 137/255 (53.73%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHG-HNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  R HG H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSVTSVG-SRNNINANTQNSLRTGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRRF---FHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPG 180
           LAR+RL ERLRG S  ++  +     D   E S        +     +++    +K+P G
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSIDGDPIFQLAGLQVTYECNKKPQG 180

Query: 181 LSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           L+QDAIN L    F         + +  +DCSICLESFT GD LI LPC H FH +CL+ 
Sbjct: 181 LTQDAINCLHRQTF-----SSAEVKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNP 240

Query: 241 WIRTCGECPYCRQHI 254
           W+R CG+CP CR+ I
Sbjct: 241 WLRACGDCPCCRRAI 247

[Close]

BLAST of Lsi03G005640.1 vs. TAIR10
Match: AT1G71980.1 (AT1G71980.1 Protease-associated (PA) RING/U-box zinc finger family protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-10
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 178 GLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 237
           G+S+  +  +  ++F +   D+ T  T    C+ICLE +T GDKL  LPC HKFH AC+D
Sbjct: 205 GMSRRLVKAMPSLIFSSFHEDNTTAFT----CAICLEDYTVGDKLRLLPCCHKFHAACVD 264

Query: 238 RWIRTCGE-CPYCRQ 252
            W+ +    CP C++
Sbjct: 265 SWLTSWRTFCPVCKR 275

[Close]

BLAST of Lsi03G005640.1 vs. TAIR10
Match: AT5G66070.2 (AT5G66070.2 RING/U-box superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-10
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1


Query: 178 GLSQDAINRLQLVVFINIINDDVTMTTTSKD---CSICLESFTDGDKLIHLP-CEHKFHH 237
           GL+ D++NR+            V +T TS +   CS+CL+ F  G+ +  LP C H FH 
Sbjct: 176 GLTGDSLNRIP----------KVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHL 235

Query: 238 ACLDRWIRTCGECPYCRQHI 254
            C+D+W+R    CP CR+H+
Sbjct: 236 PCIDKWLRRHASCPLCRRHL 245

[Close]

BLAST of Lsi03G005640.1 vs. TAIR10
Match: AT3G61180.1 (AT3G61180.1 RING/U-box superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-09
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1


Query: 208 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           +CSICL ++ DG +L  LPC H FH  C+D+W+R    CP C+ +I+ N
Sbjct: 322 ECSICLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCPLCKFNILKN 370

[Close]

BLAST of Lsi03G005640.1 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 51/179 (28.49%), Postives = 79/179 (44.13%), Query Frame = 1


Query: 78  RSPAQSDSVTSVGSRNNINANTQNSLRT---GLSGDSRLPGSVLLARERLLERLRGASSP 137
           R P+ S   T+  S     + ++ S+R    G   D +L G+   A++RL +RLR    P
Sbjct: 41  RRPSFSLYTTNHESHQAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR--IPP 100

Query: 138 TSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFIN 197
            +R       D   ++   + + +  + T+ + L     K+  G   +   R        
Sbjct: 101 RTRQ---NGKDKGNKLEQGKGKPLGDLPTEVVGL-----KKSRGRLMEWFKR-------- 160

Query: 198 IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 254
                       +DC+ICL+ F  G+ L+HLPC HKFH  CL  W+ T   CPYCR  I
Sbjct: 161 -------RVREQQDCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

[Close]

BLAST of Lsi03G005640.1 vs. NCBI nr
Match: gi|449438341|ref|XP_004136947.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus])

HSP 1 Score: 459.5 bits (1181), Expect = 3.8e-126
Identity = 231/259 (89.19%), Postives = 239/259 (92.28%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSV SRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVE S+G+PE +TSRSQRISLVD DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   IIND V MT TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]

BLAST of Lsi03G005640.1 vs. NCBI nr
Match: gi|659110057|ref|XP_008455026.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo])

HSP 1 Score: 459.5 bits (1181), Expect = 3.8e-126
Identity = 232/256 (90.62%), Postives = 240/256 (93.75%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSVGSRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVE S+G+PEISTSRSQRISL+D DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   II+DDV MT TS DCSICLESFTDGDKLIHLPCEHKFHHACLD
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240

Query: 241 RWIRTCGECPYCRQHI 254
           RWIRTCGECPYCRQHI
Sbjct: 241 RWIRTCGECPYCRQHI 255

[Close]

BLAST of Lsi03G005640.1 vs. NCBI nr
Match: gi|568867241|ref|XP_006486949.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 131/289 (45.33%), Postives = 171/289 (59.17%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSV-TSVGSRNNINANTQNS-LRTGLS-----GDSRL 120
                        LS   SP++  SV    G+  ++++N  NS +  G S     G+ RL
Sbjct: 61  HARH---------LSHRPSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEISTSR 180
           PG+VLLAR RLLERLRG S S   R+                   LV+  D + E ST  
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSNNNQRGNIFGDELRLVDAGDWAAETSTGW 180

Query: 181 S------QRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSK 240
           S        +    T+R++LV    K+PPGL+Q+A++ L + VF +  I+ +   + TS 
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEVFNSFAISSEGEASKTSL 240

Query: 241 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of Lsi03G005640.1 vs. NCBI nr
Match: gi|641838909|gb|KDO57845.1| (hypothetical protein CISIN_1g023376mg [Citrus sinensis])

HSP 1 Score: 196.4 bits (498), Expect = 5.9e-47
Identity = 129/289 (44.64%), Postives = 171/289 (59.17%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSV-TSVGSRNNINANTQNS-LRTGLS-----GDSRL 120
                        LS   SP++  SV    G+  ++++N  NS +  G S     G+ RL
Sbjct: 61  HARH---------LSHRPSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEIS--- 180
           PG+VLLAR RLLERLRG S S   R+                   LV+  D + E S   
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGW 180

Query: 181 ---TSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSK 240
              +S    +    T+R++LV    K+PPGL+Q+A++ L + +F +  I+ +   + TS 
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSL 240

Query: 241 DCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 DCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of Lsi03G005640.1 vs. NCBI nr
Match: gi|567860412|ref|XP_006422860.1| (hypothetical protein CICLE_v10028999mg [Citrus clementina])

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 128/284 (45.07%), Postives = 168/284 (59.15%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRS- 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVG-SRNNINANTQNSLRT-GLSGDSRLPGSVL 120
               R  P    P   +R+    D  TS   S N +N+    S  +   +G+ RLPG+VL
Sbjct: 61  -PHARHLPH--RPSPSERASVWLDQGTSQHVSSNPMNSEVSRSTSSPSWNGNERLPGTVL 120

Query: 121 LARERLLERLRGAS-SPTSRNA------------------LVEPSDGSPEIS------TS 180
           LAR RLLERLRG S S   R+                   LV+  D + E S      +S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 RSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINI-INDDVTMTTTSKDCSIC 240
               +    T+R++LV    K+PPGL+Q+A++ L + +F +  I+ +   + TS DCSIC
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIFNSFAISSEGEASKTSLDCSIC 240

Query: 241 LESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 257
           LESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 LESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

The following BLAST results are available for this feature:

BLAST of Lsi03G005640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHY1A_ARATH	1.9e-37	39.61	Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2...	[more]
ZNRF3_HUMAN	5.8e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3	[more]
ZNRF3_XENTR	7.6e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1	[more]
RNF12_XENTR	7.6e-10	37.04	E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1	[more]
ZNRF3_DANRE	9.9e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2	[more]

BLAST of Lsi03G005640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D2_CUCSA	2.6e-126	89.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1	[more]
A0A067EVC3_CITSI	4.1e-47	44.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1	[more]
V4SB77_9ROSI	7.0e-47	45.07	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1	[more]
A0A061E823_THECC	3.3e-44	46.95	RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007...	[more]
A0A061E052_THECC	2.1e-43	46.95	RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007...	[more]

BLAST of Lsi03G005640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49850.1	1.1e-38	39.61	RING/U-box superfamily protein	[more]
AT1G71980.1	2.8e-10	40.00	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT5G66070.2	6.2e-10	37.50	RING/U-box superfamily protein	[more]
AT3G61180.1	1.0e-09	46.94	RING/U-box superfamily protein	[more]
AT2G15580.1	1.8e-09	28.49	RING/U-box superfamily protein	[more]

BLAST of Lsi03G005640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438341\|ref\|XP_004136947.1\|	3.8e-126	89.19	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus]	[more]
gi\|659110057\|ref\|XP_008455026.1\|	3.8e-126	90.63	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo]	[more]
gi\|568867241\|ref\|XP_006486949.1\|	1.2e-47	45.33	PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis]	[more]
gi\|641838909\|gb\|KDO57845.1\|	5.9e-47	44.64	hypothetical protein CISIN_1g023376mg [Citrus sinensis]	[more]
gi\|567860412\|ref\|XP_006422860.1\|	1.0e-46	45.07	hypothetical protein CICLE_v10028999mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G005640	Lsi03G005640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G005640.1	Lsi03G005640.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G005640.1.three_prime_UTR.1	Lsi03G005640.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G005640.1.CDS.3	Lsi03G005640.1.CDS.3	CDS
Lsi03G005640.1.CDS.2	Lsi03G005640.1.CDS.2	CDS
Lsi03G005640.1.CDS.1	Lsi03G005640.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G005640.1.five_prime_UTR.2	Lsi03G005640.1.five_prime_UTR.2	five_prime_UTR
Lsi03G005640.1.five_prime_UTR.1	Lsi03G005640.1.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 208..250 score: 4.6
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 209..249 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 209..250 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 206..253 score: 9.3
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 35..49 score: 1.9E-40coord: 174..256 score: 1.9
None	No IPR available	PANTHER	PTHR14155:SF182	SUBFAMILY NOT NAMED	coord: 35..49 score: 1.9E-40coord: 174..256 score: 1.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 208..255 score: 1.58