ClCG02G006670 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G006670
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RING/U-box superfamily protein LENGTH=250
Location	CG_Chr02 : 7678802 .. 7681288 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATTCCAATTCCAACTCAATCCAATCCACGCTCGAGTTTTTCTTTCAATCTGTCTGCTACCGCAAGTAACCAAGCAAATCCCCCTCCATTTACCTTCAACTTCCATCCACATTTCTCCGAAATTTCGCCTCCATTTCTTCCCACTTTCAAACCCTTTCCATTTTTCCTTTTTTACATTTCAGATTCTACTCAAAACAAGCATTGAAGCGTTTGAATCTGTGCATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTGGGACTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGTCATCATGCTCACAACGGCAACCACCGTCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCATCGCTGCATGAACGCCGCCAATCTCCTAGATTTTTTAACCCTGTAAGGAAGGCTGGGTTTCTGTTACTTGAGAAATTGGGTTTTTAATTCGATGAAGTCTATATTAACGGCTGAGAATTGTTGGAGTTGGAAGAACTGTTCATATTTTGTTTTGATTGGGAATTTTTTAGCGTTTCTGACCTAAAAGTTCTTCTAAACCGTAGAATCAGTTGGGAATATGTTGAAAAGATCATGTTTGCCCTAATTTATTAGTTAAGGTTGTTGGGATGGTTTTATATGATATCCCTGGGTTCATGCCCTAAGAATAGTGTCTTTTGCACTTAATTTAGTCTTGTAATCGGAGTTCCAATTATGAGTTTCTTTGTTTTGTTAATGTTTTTAAAAGTTTTAGTTGTTTTTGGTTTTAGAATTTGACTATGATTCAAATGTTTTCGTATGAAAGATGAAAACTGATTAAAAACTAAATGGTTAGCAACGGATATTTGGCTAAGCTAATGAGTTAGTGATTATTCTTATTCTTCAGTGATAATTCTGTTTTCCATTGCTATGAAATACTTGGAACCTGAATATAACTTTTCCAGTTTTATTAGCTTCTTAATGCTACTTGGCTGTGAAAATATGATTTAGTTGGTATGTGATCATGGAGACATAACTTCCTTACAATTAAGGATGCTTTTCTATATTTCTTTTTCTGGGTTGTCATCTCTATTCTGAATTTCAAATTCAATTAGTTTGGAGGCATTAACACTATGTCTTCATTGTAGCTTTCTGTTGACCGATCGCCTGCACAGTCTGACTCAGTTACAAGCATTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGCTTAAGTGGGGAGTCCAGATTGCCTGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTCGAGAGATTGAGAGGTGTCTCTTCACCGACGAGCAGGTCAGTTCCTATTGTCATGTGCTTGTTGTTTACACTACTATGCAGAAAAATTTGGGACTTCAATTGGAATATTCCATGTTATTTCTCCTAGAAACATCTTTCTAGATATAATCACTTTTGTCAGGTTCAAGACATGTCTCTAATTATACAAAATCAATGTAGTGTTTGATTTTACACTTTTAAATGTGATTTTCATATAATCAAAGTTGATTTTAAATAATTAAATGAACGCTTGTAAACACATGCTGTGGTATGAATTTACTTGTATGATTTTCTTTGTTGATTGGGAGTTGGTTGTACTGTATACTCAGAAAATAGTATCCGATTCCAATAAACTCATGAAGTTTCTACAATTTCTGTCCTAGACTTCAACATTCTTGAAAAACTATATTTCTGGATAGCAAATTGGACTTGAAAATTGTTACTGGTTGGCCATTTGTATGTTGACAACTGGAATATATCCCAGCTTTGTAGTATTGCTAACTGAATTAGTTTATTCATCAGGAACACTCTTGCTGAAGCATCAGATGTAAGTCCAGAAATCTTGACAAGTCGATCACAGAGGATATCCCTTGTTGATGCTGACAGGATTCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGAGGTTTTTATCAATACAGAGCACATCATCGACGATGACATGACTACGACAACAACGTCAAAGGATTGTAGTATATGTTTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCTTGTGAGCACAAATTTCATCATGCTTGCTTGGACCGATGGATTCGAACATGTGGAGAATGTCCATATTGTCGACAACATATCGTCGTTAACTAATCTTTTCTAACCCGTTCTGCAACTTGGGATTTCCTGTATGTGTAGAAAGGTTAGAGACTGTCAATTATTCCAAGTTGTGGTATTAATCTTTATATTTATAGTTGATGTCTATACTTGTATCCTTCTAAGTCCTGTTTTGACTCCAAATTATGTGGCTTTTTTTTTACTAGCCAAGAGGTTTGACTACTTTGTAACTCCTTTTTCTTGGTCTTAGATGATGGGAAAAAAGGACACTATGATTCTTTTATACAAGGAA

mRNA sequence

CCCAATTCCAATTCCAACTCAATCCAATCCACGCTCGAGTTTTTCTTTCAATCTGTCTGCTACCGCAAGTAACCAAGCAAATCCCCCTCCATTTACCTTCAACTTCCATCCACATTTCTCCGAAATTTCGCCTCCATTTCTTCCCACTTTCAAACCCTTTCCATTTTTCCTTTTTTACATTTCAGATTCTACTCAAAACAAGCATTGAAGCGTTTGAATCTGTGCATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTGGGACTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGTCATCATGCTCACAACGGCAACCACCGTCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCATCGCTGCATGAACGCCGCCAATCTCCTAGATTTTTTAACCCTCTTTCTGTTGACCGATCGCCTGCACAGTCTGACTCAGTTACAAGCATTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGCTTAAGTGGGGAGTCCAGATTGCCTGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTCGAGAGATTGAGAGGTGTCTCTTCACCGACGAGCAGGAACACTCTTGCTGAAGCATCAGATGTAAGTCCAGAAATCTTGACAAGTCGATCACAGAGGATATCCCTTGTTGATGCTGACAGGATTCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGAGGTTTTTATCAATACAGAGCACATCATCGACGATGACATGACTACGACAACAACGTCAAAGGATTGTAGTATATGTTTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCTTGTGAGCACAAATTTCATCATGCTTGCTTGGACCGATGGATTCGAACATGTGGAGAATGTCCATATTGTCGACAACATATCGTCGTTAACTAATCTTTTCTAACCCGTTCTGCAACTTGGGATTTCCTGTATGTGTAGAAAGGTTAGAGACTGTCAATTATTCCAAGTTGTGGTATTAATCTTTATATTTATAGTTGATGTCTATACTTGTATCCTTCTAAGTCCTGTTTTGACTCCAAATTATGTGGCTTTTTTTTTACTAGCCAAGAGGTTTGACTACTTTGTAACTCCTTTTTCTTGGTCTTAGATGATGGGAAAAAAGGACACTATGATTCTTTTATACAAGGAA

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTGGGACTTGATTCTGAGCCTCCCGATCGGCATCTTCAGTATCAACGCCGTCATCATGCTCACAACGGCAACCACCGTCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCATCGCTGCATGAACGCCGCCAATCTCCTAGATTTTTTAACCCTCTTTCTGTTGACCGATCGCCTGCACAGTCTGACTCAGTTACAAGCATTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGCTTAAGTGGGGAGTCCAGATTGCCTGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTCGAGAGATTGAGAGGTGTCTCTTCACCGACGAGCAGGAACACTCTTGCTGAAGCATCAGATGTAAGTCCAGAAATCTTGACAAGTCGATCACAGAGGATATCCCTTGTTGATGCTGACAGGATTCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGAGGTTTTTATCAATACAGAGCACATCATCGACGATGACATGACTACGACAACAACGTCAAAGGATTGTAGTATATGTTTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCTTGTGAGCACAAATTTCATCATGCTTGCTTGGACCGATGGATTCGAACATGTGGAGAATGTCCATATTGTCGACAACATATCGTCGTTAACTAA

Protein sequence

MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSSLHERRQSPRFFNPLSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN

Homology

[Close]

BLAST of ClCG02G006670 vs. Swiss-Prot
Match: RHY1A_ARATH (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.6e-42
Identity = 110/265 (41.51%), Postives = 142/265 (53.58%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQ-RRHHAHNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  RRH  H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANTQNSLRTGLSGESRLPGSVL 120
           +   RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRRF---FHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLFERLRGVS-SPTSRNTLAEASDVSPEILTSRSQRISLVDADRI------RLVPA 180
           LAR+RLFERLRGVS S  SR+      D        R      +D D I      ++   
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDD-------QRESSFHSIDGDPIFQLAGLQVTYE 180

Query: 181 PSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCE 240
            +K+P GL+QDAIN L  + F + E  +  +M      +DCSICLESFT GD LI LPC 
Sbjct: 181 CNKKPQGLTQDAINCLHRQTFSSAE--VKSEM------RDCSICLESFTKGDMLISLPCT 240

Query: 241 HKFHHACLDRWIRTCGECPYCRQHI 257
           H FH +CL+ W+R CG+CP CR+ I
Sbjct: 241 HSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]

BLAST of ClCG02G006670 vs. Swiss-Prot
Match: RNF12_HUMAN (E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-11
Identity = 47/181 (25.97%), Postives = 77/181 (42.54%), Query Frame = 1


Query: 79  SPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLARERLFERLRGVSSPTSRN 138
           S + S S +S  S ++ ++++ +S  +   GES    S L           G SS  S  
Sbjct: 453 SSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSN-----EGSSSSGSSG 512

Query: 139 TLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLSQDAINRLQLEVFINTEHI 198
              E    +P           L  A    L      +P GL+++ I+ L +  F   + +
Sbjct: 513 ARREGRHRAPVTFDESGSLPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLAMRSFGENDAL 572

Query: 199 IDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVV 258
                      K CS+C+  +T+G+KL  LPC H++H  C+DRW+     CP CR+ ++ 
Sbjct: 573 -----------KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLA 617

Query: 259 N 260
           +
Sbjct: 633 S 617

[Close]

BLAST of ClCG02G006670 vs. Swiss-Prot
Match: ZNRF3_HUMAN (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-10
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 202 DMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 258
           D  +++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 283 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338

[Close]

BLAST of ClCG02G006670 vs. Swiss-Prot
Match: ZNRF3_DANRE (E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-10
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 202 DMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 258
           D  +++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 257 DSVSSSSTSDCAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNII 312

[Close]

BLAST of ClCG02G006670 vs. Swiss-Prot
Match: ZNRF3_XENTR (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.7e-10
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 202 DMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 258
           D  +++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 256 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311

[Close]

BLAST of ClCG02G006670 vs. TrEMBL
Match: A0A0A0K6D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 2.4e-127
Identity = 223/259 (86.10%), Postives = 236/259 (91.12%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHH HNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLA 120
           L ERRQSPRFFNPLSVDRSPAQSDS TS+ SRNNIN NTQNSLR+GLSG+SRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLS 180
           RERL ERLRG SSPT+RN L EAS+ +PE  TSRSQRISLVDADR+RLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQLEVFINT+HII+D +  T TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 260
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]

BLAST of ClCG02G006670 vs. TrEMBL
Match: A0A061E823_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 9.9e-49
Identity = 126/264 (47.73%), Postives = 163/264 (61.74%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANT-QNSLRTGLSGESRLPGSVL 120
            H R+ S R  +  S +RS  + D  TS     N +NA+   +S R  L+   RLPG+VL
Sbjct: 61  -HVRQFSSRASSQ-SQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRIS-----LVDADRIRLVPAPS 180
           LAR RL ERLRGVS  T+R  L +A D   EI T  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHK 240
           K+PPGL+Q+A++ L LEVF + E  +D D   +  S+DCSICLESF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLDRWIRTCGECPYCRQHIV 258
           FH ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 255

[Close]

BLAST of ClCG02G006670 vs. TrEMBL
Match: A0A061E052_THECC (RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007187 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-48
Identity = 125/264 (47.35%), Postives = 162/264 (61.36%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANT-QNSLRTGLSGESRLPGSVL 120
            H R+ S R  +    +RS  + D  TS     N +NA+   +S R  L+   RLPG+VL
Sbjct: 61  -HVRQFSSRASS--QSERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRIS-----LVDADRIRLVPAPS 180
           LAR RL ERLRGVS  T+R  L +A D   EI T  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHK 240
           K+PPGL+Q+A++ L LEVF + E  +D D   +  S+DCSICLESF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLDRWIRTCGECPYCRQHIV 258
           FH ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 254

[Close]

BLAST of ClCG02G006670 vs. TrEMBL
Match: A0A067EVC3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.4e-48
Identity = 132/291 (45.36%), Postives = 168/291 (57.73%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSV-TSIGSRNNINANTQNS-LRTGLS-----GESRL 120
            H R  S R         SP++  SV    G+  ++++N  NS +  G S     G  RL
Sbjct: 61  -HARHLSHR--------PSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLFERLRGVS-SPTSRN------------------TLAEASDVSPEILTSR 180
           PG+VLLAR RL ERLRGVS S   R+                   L +A D + E     
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGW 180

Query: 181 SQRIS----LVDADRIR--LVPAPSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTT 240
           S   S    L+ +   R  LV    K+PPGL+Q+A++ L +E+F      I  +   + T
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIF--NSFAISSEGEASKT 240

Query: 241 SKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 260
           S DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of ClCG02G006670 vs. TrEMBL
Match: V4SB77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-47
Identity = 130/286 (45.45%), Postives = 164/286 (57.34%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTSIG-SRNNINANTQNSLRT-GLSGESRLPGSVL 120
            H R    R   P   +R+    D  TS   S N +N+    S  +   +G  RLPG+VL
Sbjct: 61  -HARHLPHR---PSPSERASVWLDQGTSQHVSSNPMNSEVSRSTSSPSWNGNERLPGTVL 120

Query: 121 LARERLFERLRGVS-SPTSRN------------------TLAEASDVSPEILTSRSQRIS 180
           LAR RL ERLRGVS S   R+                   L +A D + E     S   S
Sbjct: 121 LARARLLERLRGVSLSENGRSGRGLSSNNQRGNIFGDELRLVDAGDWAAETSAGWSAVSS 180

Query: 181 ----LVDADRIR--LVPAPSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCS 240
               L+ +   R  LV    K+PPGL+Q+A++ L +E+F      I  +   + TS DCS
Sbjct: 181 PFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEIF--NSFAISSEGEASKTSLDCS 240

Query: 241 ICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 260
           ICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 ICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of ClCG02G006670 vs. TAIR10
Match: AT1G49850.1 (AT1G49850.1 RING/U-box superfamily protein)

HSP 1 Score: 172.2 bits (435), Expect = 4.3e-43
Identity = 110/265 (41.51%), Postives = 142/265 (53.58%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQ-RRHHAHNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  RRH  H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANTQNSLRTGLSGESRLPGSVL 120
           +   RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRRF---FHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLFERLRGVS-SPTSRNTLAEASDVSPEILTSRSQRISLVDADRI------RLVPA 180
           LAR+RLFERLRGVS S  SR+      D        R      +D D I      ++   
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDD-------QRESSFHSIDGDPIFQLAGLQVTYE 180

Query: 181 PSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCE 240
            +K+P GL+QDAIN L  + F + E  +  +M      +DCSICLESFT GD LI LPC 
Sbjct: 181 CNKKPQGLTQDAINCLHRQTFSSAE--VKSEM------RDCSICLESFTKGDMLISLPCT 240

Query: 241 HKFHHACLDRWIRTCGECPYCRQHI 257
           H FH +CL+ W+R CG+CP CR+ I
Sbjct: 241 HSFHSSCLNPWLRACGDCPCCRRAI 247

[Close]

BLAST of ClCG02G006670 vs. TAIR10
Match: AT2G15580.1 (AT2G15580.1 RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-11
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1


Query: 210 KDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 257
           +DC+ICL+ F  G+ L+HLPC HKFH  CL  W+ T   CPYCR  I
Sbjct: 148 QDCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

[Close]

BLAST of ClCG02G006670 vs. TAIR10
Match: AT5G55970.1 (AT5G55970.1 RING/U-box superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-11
Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 1


Query: 200 DDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 257
           D D  T T   +C ICL  + D +++  LPC HKFH  C+D+W+R    CP C+Q +
Sbjct: 285 DSDSATVTDDPECCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCKQDL 341

[Close]

BLAST of ClCG02G006670 vs. TAIR10
Match: AT1G18760.1 (AT1G18760.1 Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 42/141 (29.79%), Postives = 61/141 (43.26%), Query Frame = 1


Query: 114 PGSVLLARERLFERLRGVSSPTSRNTLAEASDVSPEI-LTSRSQRISLVDADRIRLVPAP 173
           PG  LL    +F        P       E  D+S E      + R SL + + I L PA 
Sbjct: 98  PGDDLLVSLLIFPN----DEPIEEEYEIEEEDLSEEEDQIEEAVRASLEETNNISLRPA- 157

Query: 174 SKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEH 233
                  ++  +N L  +++            TT++++ C+ICLE F DG K++ LPC H
Sbjct: 158 -------NKLVVNSLARKIY----------KKTTSSTERCTICLEEFNDGTKVMTLPCGH 216

Query: 234 KFHHACLDRWIRTCGECPYCR 254
           +F   C+  W  T  +CP CR
Sbjct: 218 EFDDECVLTWFETNHDCPLCR 216

[Close]

BLAST of ClCG02G006670 vs. TAIR10
Match: AT5G20910.1 (AT5G20910.1 RING/U-box superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 35/125 (28.00%), Postives = 57/125 (45.60%), Query Frame = 1


Query: 132 SSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLSQDAINRLQLEV 191
           S+  + NT+ E +++  E++      I  +  D       P + PP  S++ + +L + +
Sbjct: 162 SNGPTENTIGETANLMQELINGLDMIIPDILDDG-----GPPRAPPA-SKEVVEKLPVII 221

Query: 192 FINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPY 251
           F  TE ++           +C IC E+   GDK+  LPC+H FH  CL  W+     CP 
Sbjct: 222 F--TEELLKK----FGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPI 274

Query: 252 CRQHI 257
           CR  +
Sbjct: 282 CRHEL 274

[Close]

BLAST of ClCG02G006670 vs. NCBI nr
Match: gi|449438341|ref|XP_004136947.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus])

HSP 1 Score: 463.0 bits (1190), Expect = 3.4e-127
Identity = 223/259 (86.10%), Postives = 236/259 (91.12%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHH HNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLA 120
           L ERRQSPRFFNPLSVDRSPAQSDS TS+ SRNNIN NTQNSLR+GLSG+SRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLS 180
           RERL ERLRG SSPT+RN L EAS+ +PE  TSRSQRISLVDADR+RLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQLEVFINT+HII+D +  T TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 260
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]

BLAST of ClCG02G006670 vs. NCBI nr
Match: gi|659110057|ref|XP_008455026.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo])

HSP 1 Score: 462.6 bits (1189), Expect = 4.5e-127
Identity = 224/256 (87.50%), Postives = 236/256 (92.19%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDR+LQYQRRHH HN NHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTSIGSRNNINANTQNSLRTGLSGESRLPGSVLLA 120
           L ERRQSPRFFNPLSVDRSPAQSDS TS+GSRNNIN NTQNSLR+GLSG+SRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRISLVDADRIRLVPAPSKRPPGLS 180
           RERL ERLRG SSPTSRN L EAS+ +PEI TSRSQRISL+DADR+RLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQLEVFINT+ IIDDD+  T TS DCSICLESFTDGDKLIHLPCEHKFHHACLD
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240

Query: 241 RWIRTCGECPYCRQHI 257
           RWIRTCGECPYCRQHI
Sbjct: 241 RWIRTCGECPYCRQHI 255

[Close]

BLAST of ClCG02G006670 vs. NCBI nr
Match: gi|590687187|ref|XP_007042592.1| (RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 126/264 (47.73%), Postives = 163/264 (61.74%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANT-QNSLRTGLSGESRLPGSVL 120
            H R+ S R  +  S +RS  + D  TS     N +NA+   +S R  L+   RLPG+VL
Sbjct: 61  -HVRQFSSRASSQ-SQERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRIS-----LVDADRIRLVPAPS 180
           LAR RL ERLRGVS  T+R  L +A D   EI T  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHK 240
           K+PPGL+Q+A++ L LEVF + E  +D D   +  S+DCSICLESF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLDRWIRTCGECPYCRQHIV 258
           FH ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 255

[Close]

BLAST of ClCG02G006670 vs. NCBI nr
Match: gi|568867241|ref|XP_006486949.1| (PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis])

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 134/291 (46.05%), Postives = 169/291 (58.08%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D DLGLDS   +R L + RRHH HN NHR DL+ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRADQDLGLDSFTSERGL-HNRRHH-HNHNHRHDLDGCDPLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSV-TSIGSRNNINANTQNS-LRTGLS-----GESRL 120
            H R  S R         SP++  SV    G+  ++++N  NS +  G S     G  RL
Sbjct: 61  -HARHLSHR--------PSPSERASVWLDQGTSQHVSSNPMNSEVSRGTSSPSWNGNERL 120

Query: 121 PGSVLLARERLFERLRGVS-SPTSRN------------------TLAEASDVSPEILTSR 180
           PG+VLLAR RL ERLRGVS S   R+                   L +A D + E  T  
Sbjct: 121 PGTVLLARARLLERLRGVSLSENGRSGRGLSNNNQRGNIFGDELRLVDAGDWAAETSTGW 180

Query: 181 SQRIS----LVDADRIR--LVPAPSKRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTT 240
           S   S    L+ +   R  LV    K+PPGL+Q+A++ L +EVF      I  +   + T
Sbjct: 181 SAVSSPFSELMTSQTERLQLVQQKRKKPPGLTQEALDCLHVEVF--NSFAISSEGEASKT 240

Query: 241 SKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 260
           S DCSICLESFTDGD+LI LPC+H+FH  CLD W+R+CG+CPYCR++IVVN
Sbjct: 241 SLDCSICLESFTDGDELICLPCKHRFHSDCLDPWVRSCGDCPYCRRNIVVN 278

[Close]

BLAST of ClCG02G006670 vs. NCBI nr
Match: gi|590687191|ref|XP_007042593.1| (RING/U-box superfamily protein, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 200.3 bits (508), Expect = 4.2e-48
Identity = 125/264 (47.35%), Postives = 162/264 (61.36%), Query Frame = 1


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHAHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RR R+GR D+D  + S   DR+  Y RRHH  + NHR D++ C   RRS 
Sbjct: 1   MTSASELFYTRRSRVGRPDSDPMIGSSI-DRN--YNRRHHLGHHNHRHDVDGCDHLRRSP 60

Query: 61  LHERRQSPRFFNPLSVDRSPAQSDSVTS-IGSRNNINANT-QNSLRTGLSGESRLPGSVL 120
            H R+ S R  +    +RS  + D  TS     N +NA+   +S R  L+   RLPG+VL
Sbjct: 61  -HVRQFSSRASS--QSERSYMRFDQGTSPFVLSNALNADAVSSSSRPSLTSNERLPGAVL 120

Query: 121 LARERLFERLRGVSSPTSRNTLAEASDVSPEILTSRSQRIS-----LVDADRIRLVPAPS 180
           LAR RL ERLRGVS  T+R  L +A D   EI T  S   S         +R +L+   +
Sbjct: 121 LARARLLERLRGVSVSTNR--LVDAGDWGSEISTGLSSGSSPFTDLTSQTERFQLLEETN 180

Query: 181 KRPPGLSQDAINRLQLEVFINTEHIIDDDMTTTTTSKDCSICLESFTDGDKLIHLPCEHK 240
           K+PPGL+Q+A++ L LEVF + E  +D D   +  S+DCSICLESF D D L  LPC H+
Sbjct: 181 KKPPGLTQEALDGLPLEVFSSGE--VDVDKKLSRDSRDCSICLESFGDDDVLTRLPCGHR 240

Query: 241 FHHACLDRWIRTCGECPYCRQHIV 258
           FH ACLD W+RTCG+CPYCR+ I+
Sbjct: 241 FHLACLDPWVRTCGDCPYCRRSIL 254

The following BLAST results are available for this feature:

BLAST of ClCG02G006670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHY1A_ARATH	7.6e-42	41.51	Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana GN=RHY1A PE=2...	[more]
RNF12_HUMAN	4.1e-11	25.97	E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3	[more]
ZNRF3_HUMAN	5.9e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3	[more]
ZNRF3_DANRE	5.9e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=1 SV=2	[more]
ZNRF3_XENTR	7.7e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3 PE=1 SV=1	[more]

BLAST of ClCG02G006670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D2_CUCSA	2.4e-127	86.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071510 PE=4 SV=1	[more]
A0A061E823_THECC	9.9e-49	47.73	RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_007...	[more]
A0A061E052_THECC	2.9e-48	47.35	RING/U-box superfamily protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007...	[more]
A0A067EVC3_CITSI	6.4e-48	45.36	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023376mg PE=4 SV=1	[more]
V4SB77_9ROSI	1.4e-47	45.45	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028999mg PE=4 SV=1	[more]

BLAST of ClCG02G006670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49850.1	4.3e-43	41.51	RING/U-box superfamily protein	[more]
AT2G15580.1	4.3e-11	55.32	RING/U-box superfamily protein	[more]
AT5G55970.1	7.4e-11	42.11	RING/U-box superfamily protein	[more]
AT1G18760.1	1.1e-09	29.79	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT5G20910.1	1.1e-09	28.00	RING/U-box superfamily protein	[more]

BLAST of ClCG02G006670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438341\|ref\|XP_004136947.1\|	3.4e-127	86.10	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis sativus]	[more]
gi\|659110057\|ref\|XP_008455026.1\|	4.5e-127	87.50	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo]	[more]
gi\|590687187\|ref\|XP_007042592.1\|	1.4e-48	47.73	RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao]	[more]
gi\|568867241\|ref\|XP_006486949.1\|	1.9e-48	46.05	PREDICTED: E3 ubiquitin-protein ligase RLIM [Citrus sinensis]	[more]
gi\|590687191\|ref\|XP_007042593.1\|	4.2e-48	47.35	RING/U-box superfamily protein, putative isoform 3 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G006670.1	ClCG02G006670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 211..253 score: 4.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 212..252 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 212..253 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 208..256 score: 7.7
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 174..259 score: 2.0E-41coord: 35..49 score: 2.0
None	No IPR available	PANTHER	PTHR14155:SF182	SUBFAMILY NOT NAMED	coord: 35..49 score: 2.0E-41coord: 174..259 score: 2.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 195..258 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G006670	Csa7G071510	Cucumber (Chinese Long) v2	cuwcgB547
ClCG02G006670	MELO3C018508	Melon (DHL92) v3.5.1	mewcgB197
ClCG02G006670	Cla016082	Watermelon (97103) v1	wcgwmB198
ClCG02G006670	Cla97C02G033660	Watermelon (97103) v2	wcgwmbB138
ClCG02G006670	Bhi05G000887	Wax gourd	wcgwgoB268
ClCG02G006670	CSPI07G06980	Wild cucumber (PI 183967)	cpiwcgB576
ClCG02G006670	Cucsa.219270	Cucumber (Gy14) v1	cgywcgB396
ClCG02G006670	CmaCh11G017080	Cucurbita maxima (Rimu)	cmawcgB101
ClCG02G006670	CmoCh11G014100	Cucurbita moschata (Rifu)	cmowcgB088
ClCG02G006670	Lsi03G005640	Bottle gourd (USVL1VR-Ls)	lsiwcgB233
ClCG02G006670	Cp4.1LG04g07640	Cucurbita pepo (Zucchini)	cpewcgB590
ClCG02G006670	CsGy7G006520	Cucumber (Gy14) v2	cgybwcgB507
ClCG02G006670	MELO3C018508.2	Melon (DHL92) v3.6.1	medwcgB192
ClCG02G006670	CsaV3_7G007960	Cucumber (Chinese Long) v3	cucwcgB572

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G006670	Cucumber (Chinese Long) v2	cuwcgB133
ClCG02G006670	Melon (DHL92) v3.5.1	mewcgB283
ClCG02G006670	Watermelon (97103) v1	wcgwmB176
ClCG02G006670	Watermelon (97103) v1	wcgwmB180
ClCG02G006670	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G006670	Cucurbita pepo (Zucchini)	cpewcgB378
ClCG02G006670	Bottle gourd (USVL1VR-Ls)	lsiwcgB430
ClCG02G006670	Melon (DHL92) v3.6.1	medwcgB274
ClCG02G006670	Melon (DHL92) v3.6.1	medwcgB465
ClCG02G006670	Silver-seed gourd	carwcgB0181
ClCG02G006670	Silver-seed gourd	carwcgB0288
ClCG02G006670	Silver-seed gourd	carwcgB0368
ClCG02G006670	Silver-seed gourd	carwcgB0445
ClCG02G006670	Cucumber (Chinese Long) v3	cucwcgB145
ClCG02G006670	Cucumber (Chinese Long) v3	cucwcgB308
ClCG02G006670	Watermelon (97103) v2	wcgwmbB136
ClCG02G006670	Watermelon (97103) v2	wcgwmbB159
ClCG02G006670	Watermelon (97103) v2	wcgwmbB168
ClCG02G006670	Wax gourd	wcgwgoB259
ClCG02G006670	Wax gourd	wcgwgoB281
ClCG02G006670	Watermelon (Charleston Gray)	wcgwcgB046
ClCG02G006670	Watermelon (Charleston Gray)	wcgwcgB139
ClCG02G006670	Cucurbita maxima (Rimu)	cmawcgB293
ClCG02G006670	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G006670	Cucurbita maxima (Rimu)	cmawcgB643
ClCG02G006670	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G006670	Cucurbita moschata (Rifu)	cmowcgB645