Cp4.1LG20g00500 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g00500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaC04g30840D protein
Location	Cp4.1LG20 : 200926 .. 201282 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

mRNA sequence

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Coding sequence (CDS)

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Protein sequence

MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK

Homology

[Close]

BLAST of Cp4.1LG20g00500 vs. TrEMBL
Match: A0A0A0LVD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-50
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK+DENPTD+ EIL+SADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. TrEMBL
Match: A0A068TTB9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022748001 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.5e-31
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILS--SADGV 60
           MSD Y   +GGRLTFKGGVLASRSKDIDKKKKKKKK+KS +D+   ++   ++  SA G 
Sbjct: 1   MSDAYERVRGGRLTFKGGVLASRSKDIDKKKKKKKKNKSSNDDVLAEDPNQINDPSATGS 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
               G +YTIDAAK+MKY+ELFPVE +KF YDPN    K KSVEEALDDRVKKKADRYCK
Sbjct: 61  GSGAGEIYTIDAAKKMKYDELFPVEAKKFLYDPN---AKSKSVEEALDDRVKKKADRYCK 117

[Close]

BLAST of Cp4.1LG20g00500 vs. TrEMBL
Match: C6T1K8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.8e-29
Identity = 81/132 (61.36%), Postives = 90/132 (68.18%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDE-----NPTDEAEILSSA 60
           MSDPY  AKGGRL FKGG+LASRSK IDKK KKKKK+K K ++     NP  E + L   
Sbjct: 1   MSDPYERAKGGRLAFKGGILASRSKSIDKKGKKKKKNKGKDNDNNPNPNPNPEEQELEQE 60

Query: 61  DGVEGE---------DGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALD 119
              E E         +G  YTIDAAKRMKYE+LFPVE +KFGY P    T  KSVE+ALD
Sbjct: 61  QKQEQEETPLLEDEGEGSEYTIDAAKRMKYEQLFPVEAKKFGYQPK---TNFKSVEDALD 120

[Close]

BLAST of Cp4.1LG20g00500 vs. TrEMBL
Match: A0A0J8BR80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g188480 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-29
Identity = 83/122 (68.03%), Postives = 93/122 (76.23%), Query Frame = 1


Query: 1   MSD-PYSGAKGGRLTFKGGVLASRSKDIDKKKKKKK-KDKSK-SDENPTDEAEILSSADG 60
           MSD PY   KGGRLTFKGGVLAS SK IDKK++KKK KDK+K SD+N   EA++L     
Sbjct: 1   MSDNPYERVKGGRLTFKGGVLASSSKSIDKKRRKKKNKDKNKESDDNHQQEADVLDEQPI 60

Query: 61  VEGEDG-VVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRY 119
              E G  VYTIDAAK+MKYE+LFPVE +KFGYDP     K KSV+EALDDRVKKKADRY
Sbjct: 61  TLTESGDPVYTIDAAKKMKYEDLFPVEAKKFGYDPK---VKSKSVQEALDDRVKKKADRY 119

[Close]

BLAST of Cp4.1LG20g00500 vs. TrEMBL
Match: A0A0B2NSL5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028649 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 80/132 (60.61%), Postives = 89/132 (67.42%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDE-----NPTDEAEILSSA 60
           MSDPY   KGGRL FKGG+LASRSK IDKK KKKKK+K K ++     NP  E + L   
Sbjct: 1   MSDPYERVKGGRLAFKGGILASRSKSIDKKGKKKKKNKGKDNDNNPNPNPNPEEQELEQE 60

Query: 61  DGVEGE---------DGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALD 119
              E E         +G  YTIDAAKRMKYE+LFPVE +KFGY P    T  KSVE+ALD
Sbjct: 61  QEQEQEETPLLEDEGEGSEYTIDAAKRMKYEQLFPVEAKKFGYQPK---TNFKSVEDALD 120

[Close]

BLAST of Cp4.1LG20g00500 vs. TAIR10
Match: AT2G25720.1 (AT2G25720.1 unknown protein)

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-23
Identity = 65/120 (54.17%), Postives = 77/120 (64.17%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSD--ENPTDEAEILSSADGV 60
           MSDPY    GGRL FKGG LA+R     KKKKK+KK+K K D  E+    A   S     
Sbjct: 1   MSDPYERVNGGRLAFKGGDLATRKSIEKKKKKKQKKNKEKLDGVEDGAKTAPDGSPPPAA 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
              D  +Y+IDAAK+ KY++LFPVE +KFGY P       +S E+ALDDRVKKKADRYCK
Sbjct: 61  AAGDEDIYSIDAAKKKKYDDLFPVEAKKFGYIPK---ANFESREDALDDRVKKKADRYCK 117

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: gi|778656758|ref|XP_004137395.2| (PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-50
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK+DENPTD+ EIL+SADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: gi|659066319|ref|XP_008438568.1| (PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-50
Identity = 105/118 (88.98%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPY+GAKGGRLTFKGGVLASRSKDIDKKKKKKKKDK+K+DENPTD+ EIL+SADGVEG
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: gi|697111063|ref|XP_009609411.1| (PREDICTED: uncharacterized protein LOC104103225 [Nicotiana tomentosiformis])

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-31
Identity = 81/122 (66.39%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKS----KSDENPTDEAEILSSAD 60
           MSDPY   KGGRLTFKGG +ASRSK IDKKKKKKKK+KS     SDE  T +A + ++  
Sbjct: 1   MSDPYEKVKGGRLTFKGGAVASRSKAIDKKKKKKKKNKSIDDVVSDEPLTGDAAVAATEQ 60

Query: 61  GVEGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRY 119
             +     +YTIDAAKR KY+ELFP+E RKFGYDPN    KVKSVE+ALDDRVKKKADRY
Sbjct: 61  DADAAPDDIYTIDAAKRRKYDELFPIEARKFGYDPN---AKVKSVEDALDDRVKKKADRY 119

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: gi|661898626|emb|CDO98593.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILS--SADGV 60
           MSD Y   +GGRLTFKGGVLASRSKDIDKKKKKKKK+KS +D+   ++   ++  SA G 
Sbjct: 1   MSDAYERVRGGRLTFKGGVLASRSKDIDKKKKKKKKNKSSNDDVLAEDPNQINDPSATGS 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
               G +YTIDAAK+MKY+ELFPVE +KF YDPN    K KSVEEALDDRVKKKADRYCK
Sbjct: 61  GSGAGEIYTIDAAKKMKYDELFPVEAKKFLYDPN---AKSKSVEEALDDRVKKKADRYCK 117

[Close]

BLAST of Cp4.1LG20g00500 vs. NCBI nr
Match: gi|698528714|ref|XP_009761188.1| (PREDICTED: uncharacterized protein LOC104213390 [Nicotiana sylvestris])

HSP 1 Score: 138.3 bits (347), Expect = 8.8e-30
Identity = 79/121 (65.29%), Postives = 89/121 (73.55%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKK---DKSKSDENPTDEAEILSSADG 60
           MSDPY   KGGRLTFKGG +ASRSK IDKKKKKKK    D   SDE  T +A + ++   
Sbjct: 1   MSDPYEKVKGGRLTFKGGTVASRSKAIDKKKKKKKNKSTDDVVSDEPLTGDAAVAATEQD 60

Query: 61  VEGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYC 119
            +     +YTIDAAKR KY+ELFPVE +KFGYDPN    KVKSVE+ALDDRVKKKADRYC
Sbjct: 61  ADAATDDIYTIDAAKRRKYDELFPVEAKKFGYDPN---AKVKSVEDALDDRVKKKADRYC 118

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g00500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g00500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVD6_CUCSA	1.1e-50	89.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031870 PE=4 SV=1	[more]
A0A068TTB9_COFCA	9.5e-31	67.50	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022748001 PE=4 SV=1	[more]
C6T1K8_SOYBN	6.8e-29	61.36	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0J8BR80_BETVU	8.9e-29	68.03	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g188480 PE=4 S...	[more]
A0A0B2NSL5_GLYSO	2.0e-28	60.61	Uncharacterized protein OS=Glycine soja GN=glysoja_028649 PE=4 SV=1	[more]

BLAST of Cp4.1LG20g00500 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25720.1	3.8e-23	54.17	unknown protein	[more]

BLAST of Cp4.1LG20g00500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656758\|ref\|XP_004137395.2\|	1.5e-50	89.83	PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus]	[more]
gi\|659066319\|ref\|XP_008438568.1\|	1.5e-50	88.98	PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo]	[more]
gi\|697111063\|ref\|XP_009609411.1\|	2.7e-31	66.39	PREDICTED: uncharacterized protein LOC104103225 [Nicotiana tomentosiformis]	[more]
gi\|661898626\|emb\|CDO98593.1\|	1.4e-30	67.50	unnamed protein product [Coffea canephora]	[more]
gi\|698528714\|ref\|XP_009761188.1\|	8.8e-30	65.29	PREDICTED: uncharacterized protein LOC104213390 [Nicotiana sylvestris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013865	DUF1754_euk

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g00500.1	Cp4.1LG20g00500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013865	Protein of unknown function DUF1754, eukaryotic	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..117 score: 1.2
None	No IPR available	PANTHER	PTHR13282:SF7	SUBFAMILY NOT NAMED	coord: 1..117 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g00500	Cucsa.112450	Cucumber (Gy14) v1	cgycpeB0259
Cp4.1LG20g00500	CmaCh13G011090	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g00500	CmoCh13G011570	Cucurbita moschata (Rifu)	cmocpeB201
Cp4.1LG20g00500	Cla018639	Watermelon (97103) v1	cpewmB522
Cp4.1LG20g00500	Csa1G031870	Cucumber (Chinese Long) v2	cpecuB517
Cp4.1LG20g00500	MELO3C001953	Melon (DHL92) v3.5.1	cpemeB471
Cp4.1LG20g00500	ClCG04G012550	Watermelon (Charleston Gray)	cpewcgB470
Cp4.1LG20g00500	CSPI01G05250	Wild cucumber (PI 183967)	cpecpiB519
Cp4.1LG20g00500	MELO3C001953.2	Melon (DHL92) v3.6.1	cpemedB553
Cp4.1LG20g00500	CsaV3_1G005150	Cucumber (Chinese Long) v3	cpecucB0636
Cp4.1LG20g00500	Bhi08G001618	Wax gourd	cpewgoB0653
Cp4.1LG20g00500	CsGy1G005020	Cucumber (Gy14) v2	cgybcpeB081
Cp4.1LG20g00500	Carg06974	Silver-seed gourd	carcpeB0736
Cp4.1LG20g00500	Carg04729	Silver-seed gourd	carcpeB0544

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g00500	Cucurbita pepo (Zucchini)	cpecpeB431
Cp4.1LG20g00500	Cucurbita pepo (Zucchini)	cpecpeB433
Cp4.1LG20g00500	Cucurbita pepo (Zucchini)	cpecpeB442
Cp4.1LG20g00500	Cucurbita maxima (Rimu)	cmacpeB484
Cp4.1LG20g00500	Cucurbita maxima (Rimu)	cmacpeB485
Cp4.1LG20g00500	Cucurbita moschata (Rifu)	cmocpeB444
Cp4.1LG20g00500	Bottle gourd (USVL1VR-Ls)	cpelsiB424