Carg04729 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04729
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Long-chain-aldehyde dehydrogenase
Location	Cucurbita_argyrosperma_scaffold_028 : 640096 .. 641044 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGCAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGAGGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGAGGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGTTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAATCAGGTCACTGCTCTCGCTAGTCTGCTTTAATTTGTCTCTGCATTCGTCCTCGCAACTCCATAGATGCAATTTGTATTTCGCGCCTGAATTTGATGGATATTTTAGTCAGGATTCCCAGTTAGATTTCGCAATATCTTCAAACATATTAGGTTAAGATCGTACGAATTAGGTTAGGCGTTGGTTTCTAACGAAAGGAATGTTTGTCCAATGTCCCTTATACTCGGAGAAAGTCTAAATTTAGTTAGGGAAGTCTCTTCCTTCTTTTCTTTCTACTCTGCTTTACCTCTTTTAAGATTCCCTTGAATAAATATGCGTAGGAATGAATTTGTTGCATAGTTCCTTAGGTGGTCACCAAATTGTTAGTTTGTAGAACAAGGTAAAATTGTGATAATCATCTGTGAATCATAGCTGTAAAGTAATAATGGTGGAGGCACAGATAGAACCCCGGACTACAAAGGAGCTCTTTGCCTTGTTAGTAACTAGCATATAAGGTAATATGTCAAATATCCTCTGCAACTGCCATAGAGTGGCCCTAAGTGGATCCTTTACCAAACACCCCTGAAGTCCCCATATTTATCTGCAGAA

mRNA sequence

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGCAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGAGGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGAGGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGTTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTAA

Coding sequence (CDS)

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGCAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGAGGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGAGGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGTTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTAA

Protein sequence

MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKKKDKSKSEENPTDEAEILSSADGVEGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY

Homology

[Close]

BLAST of Carg04729 vs. NCBI nr
Match: XP_022924043.1 (uncharacterized protein LOC111431590 [Cucurbita moschata])

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASR XXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
           EGEEGVVYTIDAAKRMKYEELFPVETR+FGYDPNNADTKFKSVEEALDDRVKKKADRY
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDDRVKKKADRY 118

[Close]

BLAST of Carg04729 vs. NCBI nr
Match: XP_023001360.1 (uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharacterized protein LOC111495520 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 113/118 (95.76%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASR   XXXXXXXXXXXXXXXXXXXXX DE EILSSADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASR--SXXXXXXXXXXXXXXXXXXXXXXDETEILSSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
           EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 116

[Close]

BLAST of Carg04729 vs. NCBI nr
Match: XP_022137706.1 (uncharacterized protein LOC111009076 [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 2.5e-36
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDP++GAKGGRLTFKGGVLASR     XXXXXXXXXXXXXXXXXXXTDE EILSSAD V
Sbjct: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDXXXXXXXXXXXXXXXXXXXTDETEILSSADAV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
           +G +G VYTIDAAKRMKYEELFPVET+KFGYDPNN++TKFKSVEEALDDRVKKKADRY
Sbjct: 61  DGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRY 118

[Close]

BLAST of Carg04729 vs. NCBI nr
Match: XP_004137395.2 (PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical protein Csa_1G031870 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 2.7e-35
Identity = 101/118 (85.59%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASR     XXXXXXXXXXXXXXXXXX TD+ EIL+SADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASR--SKDXXXXXXXXXXXXXXXXXXPTDDGEILTSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
           E  +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TKFKSVE+ALDDRVKKKADRY
Sbjct: 61  EDGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRY 116

[Close]

BLAST of Carg04729 vs. NCBI nr
Match: XP_008438568.1 (PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 8.0e-35
Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDPY+GAKGGRLTFKGGVLASR   XXXXXXXXXXXXXXXXXXXX TD+ EIL+SADGV
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASR--SXXXXXXXXXXXXXXXXXXXXPTDDGEILTSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
           EG +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRY
Sbjct: 61  EGGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRY 116

[Close]

BLAST of Carg04729 vs. TAIR10
Match: AT2G25720.1 (unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-11
Identity = 63/118 (53.39%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDPY    GGRL FKGG LA+R    XXXXXXXXXXXXXXXXXXXX             
Sbjct: 1   MSDPYERVNGGRLAFKGGDLATRKSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
                            Y++LFPVE +KFGY P      F+S E+ALDDRVKKKADRY
Sbjct: 61  XXXXXXXXXXXXXXXXXYDDLFPVEAKKFGYIPK---ANFESREDALDDRVKKKADRY 115

[Close]

BLAST of Carg04729 vs. TrEMBL
Match: tr|A0A0A0LVD6|A0A0A0LVD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35
Identity = 101/118 (85.59%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDPYSGAKGGRLTFKGGVLASR     XXXXXXXXXXXXXXXXXX TD+ EIL+SADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASR--SKDXXXXXXXXXXXXXXXXXXPTDDGEILTSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
           E  +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TKFKSVE+ALDDRVKKKADRY
Sbjct: 61  EDGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRY 116

[Close]

BLAST of Carg04729 vs. TrEMBL
Match: tr|A0A1S3AWC8|A0A1S3AWC8_CUCME (uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-35
Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDPY+GAKGGRLTFKGGVLASR   XXXXXXXXXXXXXXXXXXXX TD+ EIL+SADGV
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASR--SXXXXXXXXXXXXXXXXXXXXPTDDGEILTSADGV 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
           EG +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRY
Sbjct: 61  EGGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRY 116

[Close]

BLAST of Carg04729 vs. TrEMBL
Match: tr|A0A1S4A9J5|A0A1S4A9J5_TOBAC (uncharacterized protein LOC107795232 OS=Nicotiana tabacum OX=4097 GN=LOC107795232 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 76/120 (63.33%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASR--XXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSAD 60
           MSDPY   KGGRLTFKGG +ASR    XXXXXXXXXXXXXXX       T +A + ++  
Sbjct: 1   MSDPYEKVKGGRLTFKGGAVASRSKAIXXXXXXXXXXXXXXXVVSDEPLTGDAAVAATEQ 60

Query: 61  GVEGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
             +     +YTIDAAKR KY+ELFP+E RKFGYDPN    K KSVE+ALDDRVKKKADRY
Sbjct: 61  DADAAPDDIYTIDAAKRRKYDELFPIEARKFGYDPN---AKVKSVEDALDDRVKKKADRY 117

[Close]

BLAST of Carg04729 vs. TrEMBL
Match: tr|A0A2P5FQE5|A0A2P5FQE5_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_043710 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21
Identity = 68/118 (57.63%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASRXXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60
           MSDPY   KG RLTFKGG LA+R       XXXXXXX            + E  +  +G 
Sbjct: 1   MSDPYEKVKGNRLTFKGGGLATRSKPISKSXXXXXXXLDPQNEDGTEPKDVETSADDNGS 60

Query: 61  EGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
            G  G VYTIDAAKRMKYEELFPVE +KF YDP +     K+VE+ALDDRVKKKADRY
Sbjct: 61  GGAAGEVYTIDAAKRMKYEELFPVEAKKFSYDPKST---VKTVEDALDDRVKKKADRY 115

[Close]

BLAST of Carg04729 vs. TrEMBL
Match: tr|A0A1S3XI82|A0A1S3XI82_TOBAC (uncharacterized protein LOC107765529 OS=Nicotiana tabacum OX=4097 GN=LOC107765529 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21
Identity = 78/119 (65.55%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 1   MSDPYSGAKGGRLTFKGGVLASR-XXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADG 60
           MSDPY   KGGRLTFKGG +ASR     XXXXXXXXXXXXXXXXX   T +A + ++   
Sbjct: 1   MSDPYEKVKGGRLTFKGGTVASRSKAIDXXXXXXXXXXXXXXXXXEPLTGDAAVAATEQD 60

Query: 61  VEGEEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRY 119
            +     +YTIDAAKR KY+ELFPVE +KFGYDPN    K KSVE+ALDDRVKKKADRY
Sbjct: 61  ADAATDDIYTIDAAKRRKYDELFPVEAKKFGYDPN---AKVKSVEDALDDRVKKKADRY 116

The following BLAST results are available for this feature:

BLAST of Carg04729 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924043.1	2.0e-41	98.31	uncharacterized protein LOC111431590 [Cucurbita moschata]	[more]
XP_023001360.1	2.4e-39	95.76	uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharac...	[more]
XP_022137706.1	2.5e-36	86.44	uncharacterized protein LOC111009076 [Momordica charantia]	[more]
XP_004137395.2	2.7e-35	85.59	PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hy...	[more]
XP_008438568.1	8.0e-35	86.44	PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo]	[more]

BLAST of Carg04729 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25720.1	2.6e-11	53.39	unknown protein	[more]

BLAST of Carg04729 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04729 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVD6\|A0A0A0LVD6_CUCSA	1.8e-35	85.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1	[more]
tr\|A0A1S3AWC8\|A0A1S3AWC8_CUCME	5.3e-35	86.44	uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=...	[more]
tr\|A0A1S4A9J5\|A0A1S4A9J5_TOBAC	7.4e-21	63.33	uncharacterized protein LOC107795232 OS=Nicotiana tabacum OX=4097 GN=LOC10779523...	[more]
tr\|A0A2P5FQE5\|A0A2P5FQE5_9ROSA	9.6e-21	57.63	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_043710 PE=4 S...	[more]
tr\|A0A1S3XI82\|A0A1S3XI82_TOBAC	9.6e-21	65.55	uncharacterized protein LOC107765529 OS=Nicotiana tabacum OX=4097 GN=LOC10776552...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013865	DUF1754_euk

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04729-RA	Carg04729-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	PANTHER	PTHR13282:SF7	SUBFAMILY NOT NAMED	coord: 1..118
IPR013865	Protein of unknown function DUF1754, eukaryotic	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04729	Cla018639	Watermelon (97103) v1	carwmB0386
Carg04729	Csa1G031870	Cucumber (Chinese Long) v2	carcuB0417
Carg04729	MELO3C001953	Melon (DHL92) v3.5.1	carmeB0392
Carg04729	ClCG04G012550	Watermelon (Charleston Gray)	carwcgB0382
Carg04729	CSPI01G05250	Wild cucumber (PI 183967)	carcpiB0421
Carg04729	Cucsa.112450	Cucumber (Gy14) v1	carcgyB0450
Carg04729	CmaCh13G011090	Cucurbita maxima (Rimu)	carcmaB0540
Carg04729	CmoCh13G011570	Cucurbita moschata (Rifu)	carcmoB0526
Carg04729	Cp4.1LG20g00500	Cucurbita pepo (Zucchini)	carcpeB0544
Carg04729	CsGy1G005020	Cucumber (Gy14) v2	carcgybB0395
Carg04729	MELO3C001953.2	Melon (DHL92) v3.6.1	carmedB0396
Carg04729	CsaV3_1G005150	Cucumber (Chinese Long) v3	carcucB0420
Carg04729	Cla97C04G079540	Watermelon (97103) v2	carwmbB0408
Carg04729	Bhi08G001618	Wax gourd	carwgoB0477

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04729	Carg06974	Silver-seed gourd	carcarB414

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04729	Watermelon (97103) v2	carwmbB0412
Carg04729	Wax gourd	carwgoB0480
Carg04729	Cucurbita maxima (Rimu)	carcmaB0545
Carg04729	Cucurbita maxima (Rimu)	carcmaB0546
Carg04729	Cucurbita moschata (Rifu)	carcmoB0530
Carg04729	Cucurbita moschata (Rifu)	carcmoB0531
Carg04729	Cucurbita pepo (Zucchini)	carcpeB0545
Carg04729	Cucurbita pepo (Zucchini)	carcpeB0546
Carg04729	Bottle gourd (USVL1VR-Ls)	carlsiB355