Csa1G031870 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G031870
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 3401296 .. 3401869 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGATTTTGGGTTTAGGGTTATTGTTTGCCAATTGGGCCAAGAAAGAACCCGAATAGGCACCCGAACATAAATCTCATTGTCATCTCAGCGAGCTGAAGCAACCGGAAAGTACTCCAAACGACGATCATTTCCTCCCTTCCGGTGATCATCAAGCAACCGAAAGGTTTCTGGGCAGGCAAGGAACTGACCCCACAGGACACTGAAGACGCGCTACGATGTCCGATCCATATTCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCTCGTAGCAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAGACCGACGAGAACCCCACGGACGATGGCGAGATTTTGACATCGGCTGATGGTGTAGAAGATGGAGACGGAGCAATGTATACTATTGACGCGGCTAAGCGTATGAAGTACGAGGAGCTATTTCCTGTGGAGACAAGGAAGTTTGGTTACGACCCTAACAACTCCAATACCAAGTTCAAGTCCGTGGAGGATGCTCTCGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

mRNA sequence

ATGTCCGATCCATATTCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCTCGTAGCAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAGACCGACGAGAACCCCACGGACGATGGCGAGATTTTGACATCGGCTGATGGTGTAGAAGATGGAGACGGAGCAATGTATACTATTGACGCGGCTAAGCGTATGAAGTACGAGGAGCTATTTCCTGTGGAGACAAGGAAGTTTGGTTACGACCCTAACAACTCCAATACCAAGTTCAAGTCCGTGGAGGATGCTCTCGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Coding sequence (CDS)

ATGTCCGATCCATATTCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCTCGTAGCAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAGACCGACGAGAACCCCACGGACGATGGCGAGATTTTGACATCGGCTGATGGTGTAGAAGATGGAGACGGAGCAATGTATACTATTGACGCGGCTAAGCGTATGAAGTACGAGGAGCTATTTCCTGTGGAGACAAGGAAGTTTGGTTACGACCCTAACAACTCCAATACCAAGTTCAAGTCCGTGGAGGATGCTCTCGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Protein sequence

MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVEDGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK*

Homology

[Close]

BLAST of Csa1G031870 vs. TrEMBL
Match: A0A0A0LVD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Csa1G031870 vs. TrEMBL
Match: A0A068TTB9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022748001 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.4e-35
Identity = 82/120 (68.33%), Postives = 92/120 (76.67%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILT--SADGV 60
           MSD Y   +GGRLTFKGGVLASRSKDIDKKKKKKKK+KS  D+   +D   +   SA G 
Sbjct: 1   MSDAYERVRGGRLTFKGGVLASRSKDIDKKKKKKKKNKSSNDDVLAEDPNQINDPSATGS 60

Query: 61  EDGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
             G G +YTIDAAK+MKY+ELFPVE +KF YDP   N K KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GSGAGEIYTIDAAKKMKYDELFPVEAKKFLYDP---NAKSKSVEEALDDRVKKKADRYCK 117

[Close]

BLAST of Csa1G031870 vs. TrEMBL
Match: C6T1K8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-34
Identity = 82/132 (62.12%), Postives = 93/132 (70.45%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDE-----NPTDDGEILTSA 60
           MSDPY  AKGGRL FKGG+LASRSK IDKK KKKKK+K K ++     NP  + + L   
Sbjct: 1   MSDPYERAKGGRLAFKGGILASRSKSIDKKGKKKKKNKGKDNDNNPNPNPNPEEQELEQE 60

Query: 61  DGVE---------DGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALD 119
              E         +G+G+ YTIDAAKRMKYE+LFPVE +KFGY P    T FKSVEDALD
Sbjct: 61  QKQEQEETPLLEDEGEGSEYTIDAAKRMKYEQLFPVEAKKFGYQP---KTNFKSVEDALD 120

[Close]

BLAST of Csa1G031870 vs. TrEMBL
Match: A0A0R0IPL9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G057500 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-33
Identity = 81/132 (61.36%), Postives = 92/132 (69.70%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDE-----NPTDDGEILTSA 60
           MSDPY   KGGRL FKGG+LASRSK IDKK KKKKK+K K ++     NP  + + L   
Sbjct: 1   MSDPYERVKGGRLAFKGGILASRSKSIDKKGKKKKKNKGKDNDNNPNPNPNPEEQELEQE 60

Query: 61  DGVE---------DGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALD 119
              E         +G+G+ YTIDAAKRMKYE+LFPVE +KFGY P    T FKSVEDALD
Sbjct: 61  QKQEQEETPLLEDEGEGSEYTIDAAKRMKYEQLFPVEAKKFGYQP---KTNFKSVEDALD 120

[Close]

BLAST of Csa1G031870 vs. TrEMBL
Match: A0A0B2NSL5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028649 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-33
Identity = 81/132 (61.36%), Postives = 92/132 (69.70%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDE-----NPTDDGEILTSA 60
           MSDPY   KGGRL FKGG+LASRSK IDKK KKKKK+K K ++     NP  + + L   
Sbjct: 1   MSDPYERVKGGRLAFKGGILASRSKSIDKKGKKKKKNKGKDNDNNPNPNPNPEEQELEQE 60

Query: 61  DGVE---------DGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALD 119
              E         +G+G+ YTIDAAKRMKYE+LFPVE +KFGY P    T FKSVEDALD
Sbjct: 61  QEQEQEETPLLEDEGEGSEYTIDAAKRMKYEQLFPVEAKKFGYQP---KTNFKSVEDALD 120

[Close]

BLAST of Csa1G031870 vs. TAIR10
Match: AT2G25720.1 (AT2G25720.1 unknown protein)

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-28
Identity = 70/123 (56.91%), Postives = 80/123 (65.04%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADG--- 60
           MSDPY    GGRL FKGG LA+R     KKKKK+KK+K K D    +DG   T+ DG   
Sbjct: 1   MSDPYERVNGGRLAFKGGDLATRKSIEKKKKKKQKKNKEKLDG--VEDGA-KTAPDGSPP 60

Query: 61  --VEDGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADR 119
                GD  +Y+IDAAK+ KY++LFPVE +KFGY P      F+S EDALDDRVKKKADR
Sbjct: 61  PAAAAGDEDIYSIDAAKKKKYDDLFPVEAKKFGYIP---KANFESREDALDDRVKKKADR 117

[Close]

BLAST of Csa1G031870 vs. NCBI nr
Match: gi|778656758|ref|XP_004137395.2| (PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Csa1G031870 vs. NCBI nr
Match: gi|659066319|ref|XP_008438568.1| (PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-58
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60
           MSDPY+GAKGGRLTFKGGVLASRSKDIDKKKKKKKKDK+KTDENPTDDGEILTSADGVE 
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTK KSVEDALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Csa1G031870 vs. NCBI nr
Match: gi|661898626|emb|CDO98593.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 154.8 bits (390), Expect = 9.2e-35
Identity = 82/120 (68.33%), Postives = 92/120 (76.67%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILT--SADGV 60
           MSD Y   +GGRLTFKGGVLASRSKDIDKKKKKKKK+KS  D+   +D   +   SA G 
Sbjct: 1   MSDAYERVRGGRLTFKGGVLASRSKDIDKKKKKKKKNKSSNDDVLAEDPNQINDPSATGS 60

Query: 61  EDGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
             G G +YTIDAAK+MKY+ELFPVE +KF YDP   N K KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GSGAGEIYTIDAAKKMKYDELFPVEAKKFLYDP---NAKSKSVEEALDDRVKKKADRYCK 117

[Close]

BLAST of Csa1G031870 vs. NCBI nr
Match: gi|697111063|ref|XP_009609411.1| (PREDICTED: uncharacterized protein LOC104103225 [Nicotiana tomentosiformis])

HSP 1 Score: 152.5 bits (384), Expect = 4.6e-34
Identity = 80/122 (65.57%), Postives = 89/122 (72.95%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKS----KTDENPTDDGEILTSAD 60
           MSDPY   KGGRLTFKGG +ASRSK IDKKKKKKKK+KS     +DE  T D  +  +  
Sbjct: 1   MSDPYEKVKGGRLTFKGGAVASRSKAIDKKKKKKKKNKSIDDVVSDEPLTGDAAVAATEQ 60

Query: 61  GVEDGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRY 119
             +     +YTIDAAKR KY+ELFP+E RKFGYDP   N K KSVEDALDDRVKKKADRY
Sbjct: 61  DADAAPDDIYTIDAAKRRKYDELFPIEARKFGYDP---NAKVKSVEDALDDRVKKKADRY 119

[Close]

BLAST of Csa1G031870 vs. NCBI nr
Match: gi|351723329|ref|NP_001237275.1| (uncharacterized protein LOC100500388 [Glycine max])

HSP 1 Score: 151.8 bits (382), Expect = 7.8e-34
Identity = 82/132 (62.12%), Postives = 93/132 (70.45%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDE-----NPTDDGEILTSA 60
           MSDPY  AKGGRL FKGG+LASRSK IDKK KKKKK+K K ++     NP  + + L   
Sbjct: 1   MSDPYERAKGGRLAFKGGILASRSKSIDKKGKKKKKNKGKDNDNNPNPNPNPEEQELEQE 60

Query: 61  DGVE---------DGDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALD 119
              E         +G+G+ YTIDAAKRMKYE+LFPVE +KFGY P    T FKSVEDALD
Sbjct: 61  QKQEQEETPLLEDEGEGSEYTIDAAKRMKYEQLFPVEAKKFGYQP---KTNFKSVEDALD 120

The following BLAST results are available for this feature:

BLAST of Csa1G031870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVD6_CUCSA	3.1e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031870 PE=4 SV=1	[more]
A0A068TTB9_COFCA	6.4e-35	68.33	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022748001 PE=4 SV=1	[more]
C6T1K8_SOYBN	5.4e-34	62.12	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0R0IPL9_SOYBN	1.6e-33	61.36	Uncharacterized protein OS=Glycine max GN=GLYMA_08G057500 PE=4 SV=1	[more]
A0A0B2NSL5_GLYSO	1.6e-33	61.36	Uncharacterized protein OS=Glycine soja GN=glysoja_028649 PE=4 SV=1	[more]

BLAST of Csa1G031870 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25720.1	1.4e-28	56.91	unknown protein	[more]

BLAST of Csa1G031870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656758\|ref\|XP_004137395.2\|	4.4e-61	100.00	PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus]	[more]
gi\|659066319\|ref\|XP_008438568.1\|	1.2e-58	96.61	PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo]	[more]
gi\|661898626\|emb\|CDO98593.1\|	9.2e-35	68.33	unnamed protein product [Coffea canephora]	[more]
gi\|697111063\|ref\|XP_009609411.1\|	4.6e-34	65.57	PREDICTED: uncharacterized protein LOC104103225 [Nicotiana tomentosiformis]	[more]
gi\|351723329\|ref\|NP_001237275.1\|	7.8e-34	62.12	uncharacterized protein LOC100500388 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013865	DUF1754_euk

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU103670	cucumber EST collection version 3.0	transcribed_cluster
CU110276	cucumber EST collection version 3.0	transcribed_cluster
CU124641	cucumber EST collection version 3.0	transcribed_cluster
CU171182	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G031870.1	Csa1G031870.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU110276	CU110276	transcribed_cluster
CU171182	CU171182	transcribed_cluster
CU103670	CU103670	transcribed_cluster
CU124641	CU124641	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013865	Protein of unknown function DUF1754, eukaryotic	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..117 score: 7.1
None	No IPR available	PANTHER	PTHR13282:SF7	SUBFAMILY NOT NAMED	coord: 1..117 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G031870	Cla018639	Watermelon (97103) v1	cuwmB062
Csa1G031870	MELO3C001953	Melon (DHL92) v3.5.1	cumeB027
Csa1G031870	ClCG04G012550	Watermelon (Charleston Gray)	cuwcgB057
Csa1G031870	MELO3C001953.2	Melon (DHL92) v3.6.1	cumedB022
Csa1G031870	Cla97C04G079540	Watermelon (97103) v2	cuwmbB054
Csa1G031870	Bhi08G001618	Wax gourd	cuwgoB034
Csa1G031870	CSPI01G05250	Wild cucumber (PI 183967)	cpicuB000
Csa1G031870	Cucsa.112450	Cucumber (Gy14) v1	cgycuB137
Csa1G031870	CmaCh13G011090	Cucurbita maxima (Rimu)	cmacuB206
Csa1G031870	CmoCh13G011570	Cucurbita moschata (Rifu)	cmocuB191
Csa1G031870	Cp4.1LG20g00500	Cucurbita pepo (Zucchini)	cpecuB517
Csa1G031870	CsGy1G005020	Cucumber (Gy14) v2	cgybcuB001
Csa1G031870	Carg04729	Silver-seed gourd	carcuB0417
Csa1G031870	Carg06974	Silver-seed gourd	carcuB0549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G031870	Cucurbita moschata (Rifu)	cmocuB417
Csa1G031870	Cucurbita pepo (Zucchini)	cpecuB533
Csa1G031870	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G031870	Cucurbita maxima (Rimu)	cmacuB428