Cla97C04G079540 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C04G079540
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	IBR domain-containing protein
Location	Cla97Chr04 : 26712165 .. 26712521 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATCCATATGCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGCCTTAGCCTCTCGTAGCAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGAAAAAAGTAAAACCGACGATAACCCTACGGACGAGTCCGAGATTTTGACGTCGGCTGATGGTGTAGAAGGTGGAGACGGAGCCATCTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTATTCCCTGTGGAGACCAGGAAGTTTGGTTACGATCCTAACAACTCCAATACCAAGTTCAAGTCTGTGGAGGATGCTCTCGATGACCGTGTCAAGAAGAAGGCGGATCGTTACTGTAAATAA

mRNA sequence

ATGTCGGATCCATATGCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGCCTTAGCCTCTCGTAGCAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGAAAAAAGTAAAACCGACGATAACCCTACGGACGAGTCCGAGATTTTGACGTCGGCTGATGGTGTAGAAGGTGGAGACGGAGCCATCTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTATTCCCTGTGGAGACCAGGAAGTTTGGTTACGATCCTAACAACTCCAATACCAAGTTCAAGTCTGTGGAGGATGCTCTCGATGACCGTGTCAAGAAGAAGGCGGATCGTTACTGTAAATAA

Coding sequence (CDS)

ATGTCGGATCCATATGCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGCCTTAGCCTCTCGTAGCAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGAAAAAAGTAAAACCGACGATAACCCTACGGACGAGTCCGAGATTTTGACGTCGGCTGATGGTGTAGAAGGTGGAGACGGAGCCATCTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTATTCCCTGTGGAGACCAGGAAGTTTGGTTACGATCCTAACAACTCCAATACCAAGTTCAAGTCTGTGGAGGATGCTCTCGATGACCGTGTCAAGAAGAAGGCGGATCGTTACTGTAAATAA

Protein sequence

MSDPYAGAKGGRLTFKGGALASRSKDIDKKKKKKKKEKSKTDDNPTDESEILTSADGVEGGDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK

Homology

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BLAST of Cla97C04G079540 vs. NCBI nr
Match: XP_008438568.1 (PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 111/118 (94.07%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASRXXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGVEG 60
           MSDPYAGAKGGRLTFKGG LASR XXXXXXXXXXXXXXXXXXXX TD+ EILTSADGVEG
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSXXXXXXXXXXXXXXXXXXXXPTDDGEILTSADGVEG 60

Query: 61  GDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           GDGA+YTIDAAKRMKYEELFPVETRKFGYDPNNSNTK KSVEDALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cla97C04G079540 vs. NCBI nr
Match: XP_004137395.2 (PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical protein Csa_1G031870 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASRXXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGVEG 60
           MSDPY+GAKGGRLTFKGG LASR   XXXXXXXXXXXXXXXXXX TD+ EILTSADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDXXXXXXXXXXXXXXXXXXPTDDGEILTSADGVED 60

Query: 61  GDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           GDGA+YTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cla97C04G079540 vs. NCBI nr
Match: XP_023001360.1 (uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharacterized protein LOC111495520 [Cucurbita maxima])

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-38
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASRXXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGVEG 60
           MSDPY+GAKGGRLTFKGG LASR XXXXXXXXXXXXXXXXXXXXX DE+EIL+SADGVEG
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSXXXXXXXXXXXXXXXXXXXXXXDETEILSSADGVEG 60

Query: 61  GDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
            +G +YTIDAAKRMKYEELFPVETRKFGYDPNN++TKFKSVE+ALDDRVKKKADRYCK
Sbjct: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 118

[Close]

BLAST of Cla97C04G079540 vs. NCBI nr
Match: XP_022137706.1 (uncharacterized protein LOC111009076 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASR--XXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGV 60
           MSDP+AGAKGGRLTFKGG LASR     XXXXXXXXXXXXXXXXXXXTDE+EIL+SAD V
Sbjct: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDXXXXXXXXXXXXXXXXXXXTDETEILSSADAV 60

Query: 61  EGGDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           +GGDG +YTIDAAKRMKYEELFPVET+KFGYDPNNSNTKFKSVE+ALDDRVKKKADRYCK
Sbjct: 61  DGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 120

[Close]

BLAST of Cla97C04G079540 vs. NCBI nr
Match: XP_022924043.1 (uncharacterized protein LOC111431590 [Cucurbita moschata])

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 106/120 (88.33%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASR--XXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGV 60
           MSDPY+GAKGGRLTFKGG LASR  XXXXXXXXXXXXXXXXXXXXXXTDE+EIL+SADGV
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSXXXXXXXXXXXXXXXXXXXXXXXTDEAEILSSADGV 60

Query: 61  EGGDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           EG +G +YTIDAAKRMKYEELFPVETR+FGYDPNN++TKFKSVE+ALDDRVKKKADRYCK
Sbjct: 61  EGEEGVVYTIDAAKRMKYEELFPVETRRFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 120

[Close]

BLAST of Cla97C04G079540 vs. TrEMBL
Match: tr|A0A1S3AWC8|A0A1S3AWC8_CUCME (uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.9e-42
Identity = 111/118 (94.07%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASRXXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGVEG 60
           MSDPYAGAKGGRLTFKGG LASR XXXXXXXXXXXXXXXXXXXX TD+ EILTSADGVEG
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSXXXXXXXXXXXXXXXXXXXXPTDDGEILTSADGVEG 60

Query: 61  GDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           GDGA+YTIDAAKRMKYEELFPVETRKFGYDPNNSNTK KSVEDALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cla97C04G079540 vs. TrEMBL
Match: tr|A0A0A0LVD6|A0A0A0LVD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASRXXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGVEG 60
           MSDPY+GAKGGRLTFKGG LASR   XXXXXXXXXXXXXXXXXX TD+ EILTSADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDXXXXXXXXXXXXXXXXXXPTDDGEILTSADGVED 60

Query: 61  GDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           GDGA+YTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cla97C04G079540 vs. TrEMBL
Match: tr|A0A2P5FQE5|A0A2P5FQE5_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_043710 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.4e-25
Identity = 74/120 (61.67%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASRXXXXXXXXXXXXXXXXXXXXXXTDESEILTSAD--GV 60
           MSDPY   KG RLTFKGG LA+R       XXXXXXX        T+  ++ TSAD  G 
Sbjct: 1   MSDPYEKVKGNRLTFKGGGLATRSKPISKSXXXXXXXLDPQNEDGTEPKDVETSADDNGS 60

Query: 61  EGGDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
            G  G +YTIDAAKRMKYEELFPVE +KF YDP ++    K+VEDALDDRVKKKADRYCK
Sbjct: 61  GGAAGEVYTIDAAKRMKYEELFPVEAKKFSYDPKST---VKTVEDALDDRVKKKADRYCK 117

[Close]

BLAST of Cla97C04G079540 vs. TrEMBL
Match: tr|A0A1U8M9S4|A0A1U8M9S4_GOSHI (uncharacterized protein LOC107934433 OS=Gossypium hirsutum OX=3635 GN=LOC107934433 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 67/118 (56.78%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASRXXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGVEG 60
           MSD Y   KGGRLTFKGG+LA+R                      T ++  + S +G E 
Sbjct: 1   MSDAYEKVKGGRLTFKGGSLATRKSIDKSKKKHKKKKIAEDDTQPTLDASTV-SVEGSES 60

Query: 61  GDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           G   IYTIDAAK+MKYEELFPVE RKFGYDP   N K  SVE ALDDRVKKKADRYCK
Sbjct: 61  GGADIYTIDAAKKMKYEELFPVEARKFGYDP--KNPKATSVEQALDDRVKKKADRYCK 115

[Close]

BLAST of Cla97C04G079540 vs. TrEMBL
Match: tr|A0A0D2N7A0|A0A0D2N7A0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G030000 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 67/118 (56.78%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASRXXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGVEG 60
           MSD Y   KGGRLTFKGG+LA+R                      T ++  + S +G E 
Sbjct: 1   MSDAYEKVKGGRLTFKGGSLATRKSIDKSKKKHKKKKIAEDDTQPTLDASTV-SVEGSES 60

Query: 61  GDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
           G   IYTIDAAK+MKYEELFPVE RKFGYDP   N K  SVE ALDDRVKKKADRYCK
Sbjct: 61  GGADIYTIDAAKKMKYEELFPVEARKFGYDP--KNPKATSVEQALDDRVKKKADRYCK 115

[Close]

BLAST of Cla97C04G079540 vs. TAIR10
Match: AT2G25720.1 (unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-12
Identity = 66/120 (55.00%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MSDPYAGAKGGRLTFKGGALASR--XXXXXXXXXXXXXXXXXXXXXXTDESEILTSADGV 60
           MSDPY    GGRL FKGG LA+R    XXXXXXXXXXXXXXXXXXXX             
Sbjct: 1   MSDPYERVNGGRLAFKGGDLATRKSIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  EGGDGAIYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 119
                            Y++LFPVE +KFGY P      F+S EDALDDRVKKKADRYCK
Sbjct: 61  XXXXXXXXXXXXXXXXXYDDLFPVEAKKFGYIP---KANFESREDALDDRVKKKADRYCK 117

The following BLAST results are available for this feature:

BLAST of Cla97C04G079540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438568.1	1.5e-41	94.07	PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo]	[more]
XP_004137395.2	2.6e-41	91.53	PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hy...	[more]
XP_023001360.1	2.0e-38	88.98	uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharac...	[more]
XP_022137706.1	2.6e-38	87.50	uncharacterized protein LOC111009076 [Momordica charantia]	[more]
XP_022924043.1	2.9e-37	88.33	uncharacterized protein LOC111431590 [Cucurbita moschata]	[more]

BLAST of Cla97C04G079540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWC8\|A0A1S3AWC8_CUCME	9.9e-42	94.07	uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=...	[more]
tr\|A0A0A0LVD6\|A0A0A0LVD6_CUCSA	1.7e-41	91.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1	[more]
tr\|A0A2P5FQE5\|A0A2P5FQE5_9ROSA	8.4e-25	61.67	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_043710 PE=4 S...	[more]
tr\|A0A1U8M9S4\|A0A1U8M9S4_GOSHI	1.2e-23	56.78	uncharacterized protein LOC107934433 OS=Gossypium hirsutum OX=3635 GN=LOC1079344...	[more]
tr\|A0A0D2N7A0\|A0A0D2N7A0_GOSRA	1.2e-23	56.78	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G030000 PE=4 ...	[more]

BLAST of Cla97C04G079540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C04G079540 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25720.1	3.0e-12	55.00	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013865	DUF1754_euk

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G079540.1	Cla97C04G079540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	PANTHER	PTHR13282:SF7	SUBFAMILY NOT NAMED	coord: 1..118
IPR013865	Protein of unknown function DUF1754, eukaryotic	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C04G079540	Cla018639	Watermelon (97103) v1	wmwmbB291
Cla97C04G079540	Csa1G031870	Cucumber (Chinese Long) v2	cuwmbB054
Cla97C04G079540	MELO3C001953	Melon (DHL92) v3.5.1	mewmbB159
Cla97C04G079540	ClCG04G012550	Watermelon (Charleston Gray)	wcgwmbB200
Cla97C04G079540	CSPI01G05250	Wild cucumber (PI 183967)	cpiwmbB055
Cla97C04G079540	Cucsa.112450	Cucumber (Gy14) v1	cgywmbB156
Cla97C04G079540	CmaCh01G007630	Cucurbita maxima (Rimu)	cmawmbB469
Cla97C04G079540	CmaCh13G011090	Cucurbita maxima (Rimu)	cmawmbB236
Cla97C04G079540	CmoCh13G011570	Cucurbita moschata (Rifu)	cmowmbB219
Cla97C04G079540	CsGy1G005020	Cucumber (Gy14) v2	cgybwmbB053
Cla97C04G079540	MELO3C001953.2	Melon (DHL92) v3.6.1	medwmbB147
Cla97C04G079540	Carg04729	Silver-seed gourd	carwmbB0408
Cla97C04G079540	Carg06974	Silver-seed gourd	carwmbB0549
Cla97C04G079540	CsaV3_1G005150	Cucumber (Chinese Long) v3	cucwmbB054
Cla97C04G079540	Bhi08G001618	Wax gourd	wgowmbB491

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C04G079540	Cucurbita moschata (Rifu)	cmowmbB450
Cla97C04G079540	Bottle gourd (USVL1VR-Ls)	lsiwmbB184