Cp4.1LG20g00500.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g00500.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaC04g30840D protein
Location	Cp4.1LG20 : 200926 .. 201282 (+)
Sequence length	357

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

mRNA sequence

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Coding sequence (CDS)

ATGTCGGATCCATATTCAGGGGCCAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTAGCCTCCCGTAGTAAGGATATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAAAAGCGACGAGAACCCCACGGACGAGGCCGAGATTTTGTCGTCGGCTGACGGTGTAGAGGGTGAAGACGGAGTGGTGTATACTATTGATGCGGCCAAGCGTATGAAGTATGAGGAGCTCTTCCCGGTGGAGACCAGGAAGTTCGGTTACGACCCTAACAACGCCGATACCAAGGTCAAGTCTGTGGAGGAAGCTCTTGATGACCGTGTCAAAAAGAAGGCGGATCGTTATTGTAAATAA

Protein sequence

MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK

Homology

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BLAST of Cp4.1LG20g00500.1 vs. TrEMBL
Match: A0A0A0LVD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-50
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK+DENPTD+ EIL+SADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500.1 vs. TrEMBL
Match: A0A068TTB9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022748001 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.5e-31
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILS--SADGV 60
           MSD Y   +GGRLTFKGGVLASRSKDIDKKKKKKKK+KS +D+   ++   ++  SA G 
Sbjct: 1   MSDAYERVRGGRLTFKGGVLASRSKDIDKKKKKKKKNKSSNDDVLAEDPNQINDPSATGS 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
               G +YTIDAAK+MKY+ELFPVE +KF YDPN    K KSVEEALDDRVKKKADRYCK
Sbjct: 61  GSGAGEIYTIDAAKKMKYDELFPVEAKKFLYDPN---AKSKSVEEALDDRVKKKADRYCK 117

[Close]

BLAST of Cp4.1LG20g00500.1 vs. TrEMBL
Match: C6T1K8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.8e-29
Identity = 81/132 (61.36%), Postives = 90/132 (68.18%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDE-----NPTDEAEILSSA 60
           MSDPY  AKGGRL FKGG+LASRSK IDKK KKKKK+K K ++     NP  E + L   
Sbjct: 1   MSDPYERAKGGRLAFKGGILASRSKSIDKKGKKKKKNKGKDNDNNPNPNPNPEEQELEQE 60

Query: 61  DGVEGE---------DGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALD 119
              E E         +G  YTIDAAKRMKYE+LFPVE +KFGY P    T  KSVE+ALD
Sbjct: 61  QKQEQEETPLLEDEGEGSEYTIDAAKRMKYEQLFPVEAKKFGYQPK---TNFKSVEDALD 120

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BLAST of Cp4.1LG20g00500.1 vs. TrEMBL
Match: A0A0J8BR80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g188480 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-29
Identity = 83/122 (68.03%), Postives = 93/122 (76.23%), Query Frame = 1


Query: 1   MSD-PYSGAKGGRLTFKGGVLASRSKDIDKKKKKKK-KDKSK-SDENPTDEAEILSSADG 60
           MSD PY   KGGRLTFKGGVLAS SK IDKK++KKK KDK+K SD+N   EA++L     
Sbjct: 1   MSDNPYERVKGGRLTFKGGVLASSSKSIDKKRRKKKNKDKNKESDDNHQQEADVLDEQPI 60

Query: 61  VEGEDG-VVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRY 119
              E G  VYTIDAAK+MKYE+LFPVE +KFGYDP     K KSV+EALDDRVKKKADRY
Sbjct: 61  TLTESGDPVYTIDAAKKMKYEDLFPVEAKKFGYDPK---VKSKSVQEALDDRVKKKADRY 119

[Close]

BLAST of Cp4.1LG20g00500.1 vs. TrEMBL
Match: A0A0B2NSL5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028649 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 80/132 (60.61%), Postives = 89/132 (67.42%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDE-----NPTDEAEILSSA 60
           MSDPY   KGGRL FKGG+LASRSK IDKK KKKKK+K K ++     NP  E + L   
Sbjct: 1   MSDPYERVKGGRLAFKGGILASRSKSIDKKGKKKKKNKGKDNDNNPNPNPNPEEQELEQE 60

Query: 61  DGVEGE---------DGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALD 119
              E E         +G  YTIDAAKRMKYE+LFPVE +KFGY P    T  KSVE+ALD
Sbjct: 61  QEQEQEETPLLEDEGEGSEYTIDAAKRMKYEQLFPVEAKKFGYQPK---TNFKSVEDALD 120

[Close]

BLAST of Cp4.1LG20g00500.1 vs. TAIR10
Match: AT2G25720.1 (AT2G25720.1 unknown protein)

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-23
Identity = 65/120 (54.17%), Postives = 77/120 (64.17%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSD--ENPTDEAEILSSADGV 60
           MSDPY    GGRL FKGG LA+R     KKKKK+KK+K K D  E+    A   S     
Sbjct: 1   MSDPYERVNGGRLAFKGGDLATRKSIEKKKKKKQKKNKEKLDGVEDGAKTAPDGSPPPAA 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
              D  +Y+IDAAK+ KY++LFPVE +KFGY P       +S E+ALDDRVKKKADRYCK
Sbjct: 61  AAGDEDIYSIDAAKKKKYDDLFPVEAKKFGYIPK---ANFESREDALDDRVKKKADRYCK 117

[Close]

BLAST of Cp4.1LG20g00500.1 vs. NCBI nr
Match: gi|778656758|ref|XP_004137395.2| (PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-50
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSK+DENPTD+ EIL+SADGVE 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500.1 vs. NCBI nr
Match: gi|659066319|ref|XP_008438568.1| (PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-50
Identity = 105/118 (88.98%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILSSADGVEG 60
           MSDPY+GAKGGRLTFKGGVLASRSKDIDKKKKKKKKDK+K+DENPTD+ EIL+SADGVEG
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  EDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
            DG +YTIDAAKRMKYEELFPVETRKFGYDPNN++TK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of Cp4.1LG20g00500.1 vs. NCBI nr
Match: gi|697111063|ref|XP_009609411.1| (PREDICTED: uncharacterized protein LOC104103225 [Nicotiana tomentosiformis])

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-31
Identity = 81/122 (66.39%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKS----KSDENPTDEAEILSSAD 60
           MSDPY   KGGRLTFKGG +ASRSK IDKKKKKKKK+KS     SDE  T +A + ++  
Sbjct: 1   MSDPYEKVKGGRLTFKGGAVASRSKAIDKKKKKKKKNKSIDDVVSDEPLTGDAAVAATEQ 60

Query: 61  GVEGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRY 119
             +     +YTIDAAKR KY+ELFP+E RKFGYDPN    KVKSVE+ALDDRVKKKADRY
Sbjct: 61  DADAAPDDIYTIDAAKRRKYDELFPIEARKFGYDPN---AKVKSVEDALDDRVKKKADRY 119

[Close]

BLAST of Cp4.1LG20g00500.1 vs. NCBI nr
Match: gi|661898626|emb|CDO98593.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDEAEILS--SADGV 60
           MSD Y   +GGRLTFKGGVLASRSKDIDKKKKKKKK+KS +D+   ++   ++  SA G 
Sbjct: 1   MSDAYERVRGGRLTFKGGVLASRSKDIDKKKKKKKKNKSSNDDVLAEDPNQINDPSATGS 60

Query: 61  EGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYCK 119
               G +YTIDAAK+MKY+ELFPVE +KF YDPN    K KSVEEALDDRVKKKADRYCK
Sbjct: 61  GSGAGEIYTIDAAKKMKYDELFPVEAKKFLYDPN---AKSKSVEEALDDRVKKKADRYCK 117

[Close]

BLAST of Cp4.1LG20g00500.1 vs. NCBI nr
Match: gi|698528714|ref|XP_009761188.1| (PREDICTED: uncharacterized protein LOC104213390 [Nicotiana sylvestris])

HSP 1 Score: 138.3 bits (347), Expect = 8.8e-30
Identity = 79/121 (65.29%), Postives = 89/121 (73.55%), Query Frame = 1


Query: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKK---DKSKSDENPTDEAEILSSADG 60
           MSDPY   KGGRLTFKGG +ASRSK IDKKKKKKK    D   SDE  T +A + ++   
Sbjct: 1   MSDPYEKVKGGRLTFKGGTVASRSKAIDKKKKKKKNKSTDDVVSDEPLTGDAAVAATEQD 60

Query: 61  VEGEDGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKVKSVEEALDDRVKKKADRYC 119
            +     +YTIDAAKR KY+ELFPVE +KFGYDPN    KVKSVE+ALDDRVKKKADRYC
Sbjct: 61  ADAATDDIYTIDAAKRRKYDELFPVEAKKFGYDPN---AKVKSVEDALDDRVKKKADRYC 118

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g00500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g00500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVD6_CUCSA	1.1e-50	89.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031870 PE=4 SV=1	[more]
A0A068TTB9_COFCA	9.5e-31	67.50	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022748001 PE=4 SV=1	[more]
C6T1K8_SOYBN	6.8e-29	61.36	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0J8BR80_BETVU	8.9e-29	68.03	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g188480 PE=4 S...	[more]
A0A0B2NSL5_GLYSO	2.0e-28	60.61	Uncharacterized protein OS=Glycine soja GN=glysoja_028649 PE=4 SV=1	[more]

BLAST of Cp4.1LG20g00500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25720.1	3.8e-23	54.17	unknown protein	[more]

BLAST of Cp4.1LG20g00500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656758\|ref\|XP_004137395.2\|	1.5e-50	89.83	PREDICTED: uncharacterized protein LOC101213981 [Cucumis sativus]	[more]
gi\|659066319\|ref\|XP_008438568.1\|	1.5e-50	88.98	PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo]	[more]
gi\|697111063\|ref\|XP_009609411.1\|	2.7e-31	66.39	PREDICTED: uncharacterized protein LOC104103225 [Nicotiana tomentosiformis]	[more]
gi\|661898626\|emb\|CDO98593.1\|	1.4e-30	67.50	unnamed protein product [Coffea canephora]	[more]
gi\|698528714\|ref\|XP_009761188.1\|	8.8e-30	65.29	PREDICTED: uncharacterized protein LOC104213390 [Nicotiana sylvestris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013865	DUF1754_euk

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG20g00500	Cp4.1LG20g00500	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g00500.1:cds:001	Cp4.1LG20g00500.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g00500.1	Cp4.1LG20g00500.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013865	Protein of unknown function DUF1754, eukaryotic	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..117 score: 1.2
None	No IPR available	PANTHER	PTHR13282:SF7	SUBFAMILY NOT NAMED	coord: 1..117 score: 1.2