Cp4.1LG09g09420 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g09420
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal protein L7/L12, putative
LocationCp4.1LG09 : 8373342 .. 8373977 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTTAGTTTTAAGAACAAGGCATCTCCTACCCGGTGTGTTTACAAACATCGTTCGTTCCCCTGTGGTTGCCTTCAACTTAAATGGATTACGTAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTTCCAAGGAGGAGAAGAAGCCAGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA

mRNA sequence

ATGCACTTAGTTTTAAGAACAAGGCATCTCCTACCCGGTGTGTTTACAAACATCGTTCGTTCCCCTGTGGTTGCCTTCAACTTAAATGGATTACGTAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTTCCAAGGAGGAGAAGAAGCCAGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA

Coding sequence (CDS)

ATGCACTTAGTTTTAAGAACAAGGCATCTCCTACCCGGTGTGTTTACAAACATCGTTCGTTCCCCTGTGGTTGCCTTCAACTTAAATGGATTACGTAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTTCCAAGGAGGAGAAGAAGCCAGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA

Protein sequence

MHLVLRTRHLLPGVFTNIVRSPVVAFNLNGLRRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE
Homology
[Close]
BLAST of Cp4.1LG09g09420 vs. Swiss-Prot
Match: MNP1_SCHPO (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-18
Identity = 56/136 (41.18%), Postives = 84/136 (61.76%), Query Frame = 1 

Query: 76  RVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAASKE 135
           ++  +VD+IS L+L+E +EL   L++KL + ++  +  + P  A  A    KA      E
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAP-----E 102

Query: 136 EKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGE 195
           EKK EKT + LKLES++A +K K+IKEV+S   L L +AK  VE  P VLK+ + KE+ E
Sbjct: 103 EKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKEDAE 162

Query: 196 QLIEKMKALGAKVILE 212
            +  K++ L  KV+LE
Sbjct: 163 AIKSKLEKLSCKVVLE 173

[Close]
BLAST of Cp4.1LG09g09420 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 80  LVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAASKEEKKP 139
           +V+++S LTL++ AELS  L ++ G++    V V+             ASAA        
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVV-------------ASAAGESAAAVA 66

Query: 140 EKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIE 199
           EKT +E+ LE ++A  KI +IKEVR+ T+LGLKEAKD VE  P  LK G+SK+E E+L +
Sbjct: 67  EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKK 124

Query: 200 KMKALGAKVIL 211
           K++A GA +IL
Sbjct: 127 KLEAAGATIIL 124

[Close]
BLAST of Cp4.1LG09g09420 vs. Swiss-Prot
Match: RL7_BRASB (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-16
Identity = 56/133 (42.11%), Postives = 85/133 (63.91%), Query Frame = 1 

Query: 79  RLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAASKEEKK 138
           ++VD++S LT++E AEL+ +L +K G++    V V  PGA G         AAA+  E+K
Sbjct: 6   KIVDDLSALTVLEAAELAKLLEEKWGVSAAAAVAVAAPGAGG---------AAAAPAEEK 65

Query: 139 PEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 198
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++K+E E++ 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEAEKIK 125

Query: 199 EKMKALGAKVILE 212
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of Cp4.1LG09g09420 vs. Swiss-Prot
Match: RL7_BRASO (50S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS278) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.6e-16
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 1 

Query: 79  RLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAASKEEKK 138
           ++VD++S LT++E AEL+ +L +K G++    V V  PG  G         AAA+  E+K
Sbjct: 6   KIVDDLSSLTVLEAAELAKLLEEKWGVSAAAAVAVAAPGGGG---------AAAAPAEEK 65

Query: 139 PEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 198
            E TV    + +     KI++IKEVR+ T LGLKEAKDLVE  P  +K+G++KEE E++ 
Sbjct: 66  TEFTV----VLASAGDKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKEEAEKIK 125

Query: 199 EKMKALGAKVILE 212
            +++  GAKV L+
Sbjct: 126 GQLEKAGAKVELK 125

[Close]
BLAST of Cp4.1LG09g09420 vs. Swiss-Prot
Match: RL7_OCHA4 (50S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = 1 

Query: 79  RLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAASKEEKK 138
           ++VD++S LT++E AELS +L +K G++    V V   G A        A AAA++    
Sbjct: 6   KIVDDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGA--------APAAAAE---- 65

Query: 139 PEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLI 198
            EKT +++ L     A KI +IKEVR+ T LGLKEAKDLVE  P  +K+G SK+E E++ 
Sbjct: 66  -EKTEFDVVLAD-GGANKINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGASKDEAEKIK 124

Query: 199 EKMKALGAKVILE 212
            +++A GAKV L+
Sbjct: 126 AQLEAAGAKVELK 124

[Close]
BLAST of Cp4.1LG09g09420 vs. TrEMBL
Match: A0A0A0LU08_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.7e-86
Identity = 177/214 (82.71%), Postives = 188/214 (87.85%), Query Frame = 1 

Query: 1   MHLVLRTRHLLPGVFTNIVRSPVVAFN---LNGLRRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LV R  HLLP VF N +RS  VA N    NGL RNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAE+SSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K S+A +KEEKK EKTVYELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           V+K PSVLKKGLSKEEGEQ++EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]
BLAST of Cp4.1LG09g09420 vs. TrEMBL
Match: W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.7e-76
Identity = 162/216 (75.00%), Postives = 182/216 (84.26%), Query Frame = 1 

Query: 1   MHLVLRTRHLLP-GVFTNIVRSPVVAFN---LNGLRRNYAQPARIEEEEEEVEIDQRRLP 60
           M LVLR +H LP G +    RS VVA N   +NGL +NY QPA  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKP 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL EVAEL +I  +K GMT+ P VGVMKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMGMKASAA-ASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGM +   AA A+KEEKKPEKTV+ELKLESYEAA+KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           DLVEKTPS+LKKGLSKEEGEQL+EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of Cp4.1LG09g09420 vs. TrEMBL
Match: B9T5A3_RICCO (50S ribosomal protein L7/L12, putative OS=Ricinus communis GN=RCOM_0061210 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.3e-74
Identity = 161/212 (75.94%), Postives = 182/212 (85.85%), Query Frame = 1 

Query: 6   RTRHL--LPGVFTNIV-RSPVVAFNLNG--LRRNYAQPARI-EEEEEEVEIDQRRLPADY 65
           RT+HL      FT    RS   + N+NG  L R YAQ AR  EEEEEEVEIDQRRLPADY
Sbjct: 90  RTKHLEHFSTSFTAYYKRSDNCSMNVNGVLLSRGYAQAARKDEEEEEEVEIDQRRLPADY 149

Query: 66  DPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAA 125
           DPA FDPT+HRSPPT+RVF+LVDE++GLTLVEVAELSSI+ KK GMT++P VGV+K GAA
Sbjct: 150 DPATFDPTEHRSPPTERVFKLVDEVAGLTLVEVAELSSIIMKKRGMTELPTVGVLKGGAA 209

Query: 126 GLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVE 185
           GLAGM MKA AAA+KEEKKPEKTV+ELKLESYEAA+KIKIIKEVRSFTDLGLKEAKDLVE
Sbjct: 210 GLAGMAMKAPAAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVE 269

Query: 186 KTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           KTPS+LK G+SKEE EQ+IEKMKA+GAKV++E
Sbjct: 270 KTPSILKAGVSKEEAEQIIEKMKAVGAKVVME 301

[Close]
BLAST of Cp4.1LG09g09420 vs. TrEMBL
Match: M5WHF2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.3e-74
Identity = 165/216 (76.39%), Postives = 182/216 (84.26%), Query Frame = 1 

Query: 1   MHLVLRTRHLLPGVFTNI-VRSPVVAFN---LNGLRRNYAQPARI-EEEEEEVEIDQRRL 60
           M LVLR R  LP  F    + SP+ A N   LNG  +N++QPAR  EEEEEEVEIDQRRL
Sbjct: 1   MSLVLRLRQHLPNGFCRRPLISPLAALNPGSLNGFCQNFSQPARKEEEEEEEVEIDQRRL 60

Query: 61  PADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMK 120
           PADYDPA FDPT+HRSPPTDRVFRLVDEIS LTL EVAEL SI+ +K GM + P+VGVMK
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLAEVAELGSIMMRKKGMKEPPIVGVMK 120

Query: 121 PGAAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
           PGAAGL G+ MK  AAA KEEKKPEKTV+ELKLES+EAA+KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 PGAAGL-GLAMKGPAAA-KEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           DLVEK PSVLKKGLSKEEGEQLIEK+KALGAKV+LE
Sbjct: 181 DLVEKAPSVLKKGLSKEEGEQLIEKLKALGAKVVLE 214

[Close]
BLAST of Cp4.1LG09g09420 vs. TrEMBL
Match: A0A061DXQ8_THECC (Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.2e-72
Identity = 164/221 (74.21%), Postives = 184/221 (83.26%), Query Frame = 1 

Query: 1   MHLVLRTRHLLPGVF--TNIVRSPVV---AFNLNGLRRNYAQPARIEEE--EEEVEIDQR 60
           M LVLR RH L   F       S +V   AF+ N L RN++QPA+ E+E  EEEVEIDQR
Sbjct: 1   MSLVLRLRHHLHSGFFCRKPFESQIVTLNAFSSNRLSRNFSQPAKQEQEDEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGV 120
           RLPADYDP+NFDPT+HRSPPT+RV+RLVDEISGLTL E+AEL SI+ KK GMT+ P VGV
Sbjct: 61  RLPADYDPSNFDPTEHRSPPTERVWRLVDEISGLTLSEIAELGSIIMKKRGMTEPPTVGV 120

Query: 121 MKPGAA-GLAGMGMKASA--AASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLG 180
           MK GAA GLAGM  KA+   AA+KEEKK EKTV+ELKLESYEAA+KIKIIKEVRSFTDLG
Sbjct: 121 MKAGAAAGLAGMAKKAAGGGAAAKEEKKAEKTVFELKLESYEAASKIKIIKEVRSFTDLG 180

Query: 181 LKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           LKEAKDLVEKTP+VLKKG+SKEEGEQLIEKMKALGAKV+LE
Sbjct: 181 LKEAKDLVEKTPAVLKKGVSKEEGEQLIEKMKALGAKVVLE 221

[Close]
BLAST of Cp4.1LG09g09420 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 241.1 bits (614), Expect = 6.1e-64
Identity = 138/214 (64.49%), Postives = 166/214 (77.57%), Query Frame = 1 

Query: 1   MHLVLRTRHLLPGVFTNIVRSPVVAFNLNGLRRNYAQPARIEEEEEEVEIDQRRLPADYD 60
           M LVLR R  L     +   S +   +  G  R+Y QPA+IE+EEEE E DQR+LP DYD
Sbjct: 1   MSLVLRFRQHL-----SQTSSRLSLLSRIGGYRSYTQPAKIEDEEEE-EFDQRKLPTDYD 60

Query: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120
           PA FDPT+HRSPPTDRVFRLVDEIS LTL+E++EL SI+ KK GMT++P V VMKPGA G
Sbjct: 61  PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGG 120

Query: 121 ---LAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
              + G G   S +   EE K EKTV+E+KLES+EA+AKIKIIKE+RSFTDLGLKEAK L
Sbjct: 121 GVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKAL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           VEKTP++LK GLSKEEGE+++EK+KALGAKV+LE
Sbjct: 181 VEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of Cp4.1LG09g09420 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-32
Identity = 77/146 (52.74%), Postives = 111/146 (76.03%), Query Frame = 1 

Query: 69  HRSPPT--DRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGM 128
           + SP T  + V ++V+E+S LTL+E  +L+ ILR+KL ++++PV+  M PG + L G G 
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMS-LPGSGA 94

Query: 129 KASAAA-SKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVL 188
             SA    KE+KK  KT +++ L++Y+A +KIK+IKEVR+ T LGLKEAKDLVEK P++L
Sbjct: 95  SKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLL 154

Query: 189 KKGLSKEEGEQLIEKMKALGAKVILE 212
           KKG+SKEE E++IEK+KA+GAKV +E
Sbjct: 155 KKGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of Cp4.1LG09g09420 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-24
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = 1 

Query: 74  TDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAS 133
           T ++ R+ D++  L  +E+ + S +   K+G+         + G+A +A  G    A+AS
Sbjct: 39  TKKLERIADDLLKLNRIELYDYSLLFSHKIGLN--------RYGSA-VAVTGSVGDASAS 98

Query: 134 KEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEE 193
            E K  EKT +++KLE +EAA+KIK+IKE+R+FTDLGLKEAK LVEK P ++K GL+KEE
Sbjct: 99  TETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEE 158

Query: 194 GEQLIEKMKALGAKVILE 212
            E+++EK+KA+GA V LE
Sbjct: 159 AEKIMEKLKAVGAIVALE 167

[Close]
BLAST of Cp4.1LG09g09420 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-23
Identity = 58/151 (38.41%), Postives = 93/151 (61.59%), Query Frame = 1 

Query: 61  PANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAG 120
           P+ +DP   R  P+ ++  L + I+ L+  E  ++   L + L +    ++         
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISS------- 103

Query: 121 LAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEK 180
             G+G K    A   E+K EKT +++KLE + A+ KIK+IKEVR+FT LGLKEAK+LVEK
Sbjct: 104 -DGIGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 163

Query: 181 TPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
            P++LK+G++KEE  ++I K+KA+G   ++E
Sbjct: 164 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of Cp4.1LG09g09420 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-19
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1 

Query: 129 SAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKG 188
           S   + E  K EKTV+E+KLES+EA AKIKIIKEVR    +GLKEA  LV K P+VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 189 LSKEEGEQLIEKMKALGAKVILE 212
           LSKEEGE+++EK+ ALGA+ +L+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]
BLAST of Cp4.1LG09g09420 vs. NCBI nr
Match: gi|449454776|ref|XP_004145130.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 2.4e-86
Identity = 177/214 (82.71%), Postives = 188/214 (87.85%), Query Frame = 1 

Query: 1   MHLVLRTRHLLPGVFTNIVRSPVVAFN---LNGLRRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LV R  HLLP VF N +RS  VA N    NGL RNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGLHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAE+SSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAEMSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K S+A +KEEKK EKTVYELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKGSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           V+K PSVLKKGLSKEEGEQ++EKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIVEKMKALGAKVILE 214

[Close]
BLAST of Cp4.1LG09g09420 vs. NCBI nr
Match: gi|659067613|ref|XP_008440389.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 2.4e-86
Identity = 178/214 (83.18%), Postives = 188/214 (87.85%), Query Frame = 1 

Query: 1   MHLVLRTRHLLPGVFTNIVRSPVVAFN---LNGLRRNYAQPARIEEEEEEVEIDQRRLPA 60
           M LV R  HLLP VF N +RS  VA N    NG+ RNYAQP+RIEEEEEEVEIDQRRLPA
Sbjct: 1   MRLVSRISHLLPNVFANTIRSSTVALNPLNRNGVHRNYAQPSRIEEEEEEVEIDQRRLPA 60

Query: 61  DYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPG 120
           DYDPANFDPT+HRSPPTDRVFRLVDEISGLTLVEVAELSSIL KKLGMT+MPV G MKPG
Sbjct: 61  DYDPANFDPTEHRSPPTDRVFRLVDEISGLTLVEVAELSSILMKKLGMTEMPVAGYMKPG 120

Query: 121 AAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDL 180
           A GLAGM  K S+A +KEEKK EKTVYELKLESYEA+AKIKIIKEVRS TDLGLKEAKDL
Sbjct: 121 AVGLAGMVKKVSSATAKEEKKAEKTVYELKLESYEASAKIKIIKEVRSLTDLGLKEAKDL 180

Query: 181 VEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           V+K PSVLKKGLSKEEGEQ+IEKMKALGAKVILE
Sbjct: 181 VDKAPSVLKKGLSKEEGEQIIEKMKALGAKVILE 214

[Close]
BLAST of Cp4.1LG09g09420 vs. NCBI nr
Match: gi|703123768|ref|XP_010102896.1| (50S ribosomal protein [Morus notabilis])

HSP 1 Score: 293.1 bits (749), Expect = 3.8e-76
Identity = 162/216 (75.00%), Postives = 182/216 (84.26%), Query Frame = 1 

Query: 1   MHLVLRTRHLLP-GVFTNIVRSPVVAFN---LNGLRRNYAQPARIEEEEEEVEIDQRRLP 60
           M LVLR +H LP G +    RS VVA N   +NGL +NY QPA  EEE+EEVE DQRRLP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKP 120
            DYDPA FDP++HRSPPT+RVFRLVDEISGLTL EVAEL +I  +K GMT+ P VGVMKP
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEPPSVGVMKP 120

Query: 121 GAAGLAGMGMKASAA-ASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAK 180
           GAAGLAGM +   AA A+KEEKKPEKTV+ELKLESYEAA+KIK+IKEVRSFTDLGLKEAK
Sbjct: 121 GAAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLKEAK 180

Query: 181 DLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           DLVEKTPS+LKKGLSKEEGEQL+EK+K LGAKV+LE
Sbjct: 181 DLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216

[Close]
BLAST of Cp4.1LG09g09420 vs. NCBI nr
Match: gi|1000939117|ref|XP_015583414.1| (PREDICTED: 50S ribosomal protein L7/L12 isoform X1 [Ricinus communis])

HSP 1 Score: 292.4 bits (747), Expect = 6.5e-76
Identity = 165/218 (75.69%), Postives = 187/218 (85.78%), Query Frame = 1 

Query: 1   MHLVLR-TRHLLPGVFTNIVRSPVVAFNL---NG--LRRNYAQPARI-EEEEEEVEIDQR 60
           M L+LR + HL  GV    + SP+V  NL   NG  L R YAQ AR  EEEEEEVEIDQR
Sbjct: 1   MSLILRLSHHLTSGVSKKPLFSPLVQLNLVNVNGVLLSRGYAQAARKDEEEEEEVEIDQR 60

Query: 61  RLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGV 120
           RLPADYDPA FDPT+HRSPPT+RVF+LVDE++GLTLVEVAELSSI+ KK GMT++P VGV
Sbjct: 61  RLPADYDPATFDPTEHRSPPTERVFKLVDEVAGLTLVEVAELSSIIMKKRGMTELPTVGV 120

Query: 121 MKPGAAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKE 180
           +K GAAGLAGM MKA AAA+KEEKKPEKTV+ELKLESYEAA+KIKIIKEVRSFTDLGLKE
Sbjct: 121 LKGGAAGLAGMAMKAPAAAAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKE 180

Query: 181 AKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           AKDLVEKTPS+LK G+SKEE EQ+IEKMKA+GAKV++E
Sbjct: 181 AKDLVEKTPSILKAGVSKEEAEQIIEKMKAVGAKVVME 218

[Close]
BLAST of Cp4.1LG09g09420 vs. NCBI nr
Match: gi|802551114|ref|XP_012064624.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Jatropha curcas])

HSP 1 Score: 286.6 bits (732), Expect = 3.6e-74
Identity = 162/217 (74.65%), Postives = 188/217 (86.64%), Query Frame = 1 

Query: 1   MHLVLRTRHLLPGVF-TNIVRSPVVAFN---LNG-LRRNYAQPARI-EEEEEEVEIDQRR 60
           M L+ R R+ LP  F T  + SP+V  +   LNG L R +AQ  R  E+EEEEVEIDQRR
Sbjct: 8   MSLIFRLRNHLPNGFSTKSLFSPLVPLSFMSLNGVLCRGFAQSLRKDEDEEEEVEIDQRR 67

Query: 61  LPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVM 120
           LP DYDPA FDPT+HRSPPT+RVFRLVDEISGLTLVEVAELSSI+ +K GMT++PVVG+M
Sbjct: 68  LPTDYDPATFDPTEHRSPPTERVFRLVDEISGLTLVEVAELSSIIMRKKGMTELPVVGIM 127

Query: 121 KPGAAGLAGMGMKASAAASKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEA 180
           K GAAGLAGM +KASAA++KEEKKPEKTV+ELKLES+EAA+KIKIIKEVRSFTDLGLKEA
Sbjct: 128 KGGAAGLAGMAVKASAASAKEEKKPEKTVFELKLESFEAASKIKIIKEVRSFTDLGLKEA 187

Query: 181 KDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 212
           KDLVEKTPSVLK G+SKEEGE++IEKMKA+GAKV++E
Sbjct: 188 KDLVEKTPSVLKTGVSKEEGEKIIEKMKAVGAKVVME 224

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g09420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MNP1_SCHPO3.6e-1841.1854S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
RL7_LIBAF1.1e-1743.5150S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1[more]
RL7_BRASB5.8e-1642.1150S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182... [more]
RL7_BRASO7.6e-1642.1150S ribosomal protein L7/L12 OS=Bradyrhizobium sp. (strain ORS278) GN=rplL PE=3 ... [more]
RL7_OCHA41.7e-1543.6150S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6... [more]
BLAST of Cp4.1LG09g09420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU08_CUCSA1.7e-8682.71Uncharacterized protein OS=Cucumis sativus GN=Csa_1G057000 PE=3 SV=1[more]
W9S8M4_9ROSA2.7e-7675.0050S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1[more]
B9T5A3_RICCO4.3e-7475.9450S ribosomal protein L7/L12, putative OS=Ricinus communis GN=RCOM_0061210 PE=3 ... [more]
M5WHF2_PRUPE7.3e-7476.39Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1[more]
A0A061DXQ8_THECC5.2e-7274.21Ribosomal protein L7/L12 isoform 1 OS=Theobroma cacao GN=TCM_006020 PE=3 SV=1[more]
BLAST of Cp4.1LG09g09420 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70190.16.1e-6464.49 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ... [more]
AT4G36420.11.2e-3252.74 Ribosomal protein L12 family protein[more]
AT4G37660.14.7e-2446.38 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT3G06040.16.8e-2338.41 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT2G03130.12.7e-1961.45 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
BLAST of Cp4.1LG09g09420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454776|ref|XP_004145130.1|2.4e-8682.71PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis sativus][more]
gi|659067613|ref|XP_008440389.1|2.4e-8683.18PREDICTED: 54S ribosomal protein L12, mitochondrial [Cucumis melo][more]
gi|703123768|ref|XP_010102896.1|3.8e-7675.0050S ribosomal protein [Morus notabilis][more]
gi|1000939117|ref|XP_015583414.1|6.5e-7675.69PREDICTED: 50S ribosomal protein L7/L12 isoform X1 [Ricinus communis][more]
gi|802551114|ref|XP_012064624.1|3.6e-7474.65PREDICTED: 50S ribosomal protein L12, cyanelle [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR013823Ribosomal_L7/L12_C
IPR008932Ribosomal_L7/L12_oligo
IPR000206Ribosomal_L7/12
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g09420.1Cp4.1LG09g09420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 74..211
score: 17
IPR008932Ribosomal protein L7/L12, oligomerisationPFAMPF16320Ribosomal_L12_Ncoord: 80..120
score: 8.
IPR008932Ribosomal protein L7/L12, oligomerisationunknownSSF48300Ribosomal protein L7/12, oligomerisation (N-terminal) domaincoord: 79..120
score: 1.4
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 148..210
score: 9.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 145..210
score: 3.1
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 139..210
score: 4.4
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 144..210
score: 6.28
NoneNo IPR availableGENE3DG3DSA:1.20.5.710coord: 80..122
score: 9.
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 41..211
score: 5.6
NoneNo IPR availablePANTHERPTHR24089:SF38750S RIBOSOMAL PROTEIN L7/L12-RELATEDcoord: 41..211
score: 5.6