Cp4.1LG07g08020 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g08020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem I reaction center subunit XI
Location	Cp4.1LG07 : 7109947 .. 7114733 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGGTAACCCAATGCATAATTCCACTCTTTTTCAGCTTTCGAGATATATATATATATATATATATAACGTACTCTTTCAAGGGATACTAACTTAAAGATCTCTACAAGTTGAGTAAGAATTTGTTGAGGATTGTTGGGAGAGGAGTCACACGTCAGCTAATTATTAGGACCTACATCTCCATTAGTACGAGGCCTTTTGGGGAAGCCCATAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGCCGTGATTCCTAACATGGTATTAGAGCCATACTCTTAATTTAGCCATGTCAACAGAATCCTCAAATGTCAAACAAAGAGTGTACTTTGTTTGAGGGCTCTAGAGAAGGAGTCGAGCCTCGGTTAAAGGGAGGCTATTTGAGTGCTCCATATGCCTCAAGGGAGGCTCTATGGTGTACTTTGTTCGAGGGGAGTATTGTTGGGAGAGGAGTCCCACATCGGCTAATTAAGGAGTTGATCATGGGTTTATAAGCAAGGACTACGTCTCCATTGATATGAGGCTTTTTGGGGAAGCCCAAAACAAAGCCATGAGAGCCATGAGAGCTTACGCTCAAAGTGGACAATCTCATAGTCGTTATTAGTAGCATAATTCAATCATTCGTAAAAAGTGTGTTTGCTTTTAAAAAAAATGTTATACTTCTTTGAAGAACACTTCCACATGTTAATAACCTATTGAAACTGTTGCAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAGATTTTGTATCGTTTTCTGTTTCTGCAATGCAACTTCCATGTCTGTGTTAAGGAAACATAAAAATTGTATATTTCATTTCAAACCTATTTGTTAGATCCTTTGTCATTGCATATTGATTTCCCTTTTGAAACTGTTGTGTTCTCATGTTCTATTTGTTTCTCACAAACTATAGCTTCAGTGGCTGCACTGTAAATTGGAGGGAGAACATCATCAGCACACTAGAAAGTGCTTTCAACTAAATTGCCTATGATAATTTTAGATCATATAAAACCAATTTTAAGCACTTTCTTCGAGACCACACGTAGAAAAGTTGTAACAACCTAAGCCCACCACTAGCAAATACTGTCCTCTTTGGGCTTTCCTTTTCGGGTTCCCCTTAAAGTTTTAAAACACGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATTCTTTGTTCCCCTCTCCAACTGACGTGGGATCTCACAATCCAACACCTTAAGGGCCCAACGTCCTCGCTGGCACACCGCTTGGTGTTTAGCTTTGAGACAATTTGTAACAGCCCAAGCCCACCGCTAGTAGATATTGTTCTTTTTGGGCTTTCCCTTTTAGGCTTTCCCTTTTAGGCTTTCCCTCAAGGTTAAAAGAGGTTTTCACATCCTTATAAGGAATTCTTTGTTCTCTTCTCCAACCGATGTGGAATCTCACAATCCACCCCCTTGGGGGCCTAGTGTTCTCGTTGGCACACCGCTCGGTGTTTGGCTATGATACCATTTGTAACAGCCCAAACCCACCGCTAACAGATATNCATTGAACAAAGTACGCCTCCCCTTAATCGAGGCTCGATTATTTTCCATAACCTAAAATTGAAGAAGGTTTTCATCCTCTCACTCTATCGTCGACTTGATTTTTTAAAGTTTTATTTACTAATTTAAAGTTTTTAAAATATTTTTTTAATTAAAACTTTTGTTTTTAATTAAAGTAAAATATTAATTCGTAAAAAATCAATTTATTTATTTTTAAAAATTATATTCCAAATAGAAGTTGTTGGAGACCTATTTAATTCGGATGGATTTATTATTATAAATAAATAATTAAAAAAAATATGGATAAGGGATAAGATGACGTGGCAAGTTCCATCCAATGAGAAGAGAGGGTTGATCAACCAAAGCCTCCCACAAATTTCCATGGCCACTAACAATAAACCAACACCCAAAGCCAAATCTAAAATCCTCACCTCATTCTTCTTCTTCTCTGCCATTGATCCTTTCACAAACCAAAGGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGGTAACCCAATGCATAATTCCACTCTTTTTCAGCTTTCGAGATATATATATATATATATATATAACGTACTCTTTCAAGGGATACTAACTTAAAGATCTCTACAAGTTGAGTAAGAATTTGTTGAGGATTGTTGGGAGAGGAGTCACACGTCAGCTAATTATTAGGACCTACATCTCCATTAGTACGAGGCCTTTTGGGGAAGCCCATAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGCCGTGATTCCTAACATGGTATTAGAGCCATACTCTTAATTTAGCCATGTCAACAGAATCCTCAAATGTCAAACAAAGAGTGTACTTTGTTTGAGGGCTCTAGAGAAGGAGTCGAGCCTCGGTTAAAGGGAGGCTATTTGAGTGCTCCATATGCCTCAAGGGAGGCTCTATGGTGTACTTTGTTCGAGGGGAGTATTGTTGGGAGAGGAGTCCCACATCGGCTAATTAAGGAGTTGATCATGGGTTTATAAGCAAGGACTACGTCTCCATTGATATGAGGCTTTTTGGGGAAGCCCAAAACAAAGCCATGAGAGCCATGAGAGCTTACGCTCAAAGTGGACAATCTCATAGTCGTTATTAGTAGCATAATTCAATCATTCGTAAAAAGTGTGTTTGCTTTTAAAAAAAATGTTATACTTCTTTGAAGAACACTTCCACATGTTAATAACCTATTGAAACTGTTGCAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAGATTTTGTATCGTTTTCTGTTTCTGCAATGCAACTTCCATGTCTGTGTTAAGGAAACATAAAAATTGTATATTTCATTTCAAACCTATTTGTTAGATCCTTTGTCATTGCATATTGATTTCCCTTTTGAAACTGTTGTGTTCTCATGTTCTATTTGTTTCTCACAAACTATAGCTTCAGTGGCTGCACTGTAAATTGGAGGGAGAACATCATCAGCACACTAGAAAGTGCTTTCAACTAAATTGCCTATGATAATTTTAGATCATATAAAACCAATTTTAAGCACTTTCTTCGAGACCACACGTAGAAAAGTTGTAACAACCTAAGCCCACCACTAGCAAATACTGTCCTCTTTGGGCTTTCCTTTTCGGGTTCCCCTTAAAGTTTTAAAACACGTCTGTTAGGGAGAGGTTTCCACACCCNATCAACCAAAGCCTCCCACAAATTTCCATGGCCACTAACAATAAACCAACACCCAAAGCCAAATCTAAAATCCTCACCTCATTCTTCTTCTTCTCTGCCATTGATCCTTTCACAAACCAAAGGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAG

mRNA sequence

GCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAACTTCAGTGGCTGCACTGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAACTTCAGTGGCTGCACTGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAG

Coding sequence (CDS)

GCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAACTTCAGTGGCTGCACTGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAACTTCAGTGGCTGCACTGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAG

Protein sequence

AAEAAAMATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVNFSGCTAAEAAAMATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVNFSGCTAAEAAAMATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADK

Homology

[Close]

BLAST of Cp4.1LG07g08020 vs. Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.6e-112
Identity = 205/216 (94.91%), Postives = 211/216 (97.69%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSP ASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020 vs. Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 7.1e-92
Identity = 170/218 (77.98%), Postives = 194/218 (88.99%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSN-TRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQ 294
           MA + SP+ASQL S+F+S++ ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 295 VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 354
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 355 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 414
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 415 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYFV
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFV 218

[Close]

BLAST of Cp4.1LG07g08020 vs. Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 4.6e-91
Identity = 170/217 (78.34%), Postives = 190/217 (87.56%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPA-RTH-SFTIRAIQADKPTYQ 294
           MA  TSP+ASQL S FT   T+AL+ PKG+S   LR  P+ R H SFT+RAI+ +KPTYQ
Sbjct: 1   MAATTSPMASQLKSGFT---TKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 295 VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 354
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 355 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 414
           KAGPLRNT YAG AGSLAA GL+VILS+CLTMYG+ASF EGEPS AP+LTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 415 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
           LQ+ADGWAKF+GGFFFGG+SGV WA FL+YVLDLPY+
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYY 214

[Close]

BLAST of Cp4.1LG07g08020 vs. Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.2e-78
Identity = 151/216 (69.91%), Postives = 178/216 (82.41%), Query Frame = 1


Query: 235 MATATSP-IASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQV 294
           MATA +P +ASQ+  +  + +      P+G+S + L R P     F ++A+++DKPTYQV
Sbjct: 1   MATAYAPPMASQVMKSGLACSK-----PRGMSGASLTRRPR----FVVKAVKSDKPTYQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
            GPLRNT   G AG+L A GL+ ILS+CLTMYGVASFNEGEPSTAP LTLTGRKK  D+L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
           QTA+GW++F+GGFFFGG+SG +WAYFLLYVLDLPYF
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYF 207

[Close]

BLAST of Cp4.1LG07g08020 vs. Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-33
Identity = 72/150 (48.00%), Postives = 97/150 (64.67%), Query Frame = 1


Query: 64  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPF 123
           Q ++P N DPF+G+L TP+T+S      LSNLPAYR  +SPLLRG+E+G+ HG+FLVGPF
Sbjct: 3   QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62

Query: 124 VKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPD 183
            K GPLRN+  A  AG  +A GLI+I++ CL +YGV SFN  +                +
Sbjct: 63  YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------E 122

Query: 184 QLQTADGWAKFSGGFFFGGISGVIWAYFLL 214
           QLQ+A GW +F+ G+  G I G  +AY L+
Sbjct: 123 QLQSAKGWRQFTSGWLVGSIGGASFAYILI 138

[Close]

BLAST of Cp4.1LG07g08020 vs. TrEMBL
Match: A0A0A0LHJ8_CUCSA (Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 4.8e-111
Identity = 206/216 (95.37%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020 vs. TrEMBL
Match: W9SVH5_9ROSA (Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 5.5e-99
Identity = 186/216 (86.11%), Postives = 202/216 (93.52%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPART-HSFTIRAIQADKPTYQV 294
           MATATSP+ASQL S FTS  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
           AGPLRNT YAGGAGSLAA GL+VILSICLTMYGVASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYY 216

[Close]

BLAST of Cp4.1LG07g08020 vs. TrEMBL
Match: A0A059A3M9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.6e-96
Identity = 182/218 (83.49%), Postives = 202/218 (92.66%), Query Frame = 1


Query: 235 MATAT-SPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPAR-THSFTIRAIQADKPTYQ 294
           MA AT SP+ASQL S+F SS++R+LIAPKGLS S  R +P R T SFT++AIQ++KPT+Q
Sbjct: 1   MAAATASPMASQLKSSFASSSSRSLIAPKGLSGSSFRALPTRRTRSFTVKAIQSEKPTFQ 60

Query: 295 VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 354
           V+QP+NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPLNGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 355 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 414
           KAGPLRNT YAG AGSLAAGGL+VILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFNEGEPSTAPSLTLTGRKKEPDQ 180

Query: 415 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           LQTA+GWAKF+GGFFFGGISGV WAYFLLYVL+LPYFV
Sbjct: 181 LQTANGWAKFTGGFFFGGISGVTWAYFLLYVLNLPYFV 218

[Close]

BLAST of Cp4.1LG07g08020 vs. TrEMBL
Match: B9SMR5_RICCO (Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus communis GN=RCOM_1628230 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 5.7e-96
Identity = 183/217 (84.33%), Postives = 197/217 (90.78%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQV 294
           MAT  SP+ASQL S+F SS TR L  P+G+S +P R  PA R  SFT++AIQ++KPT+QV
Sbjct: 1   MATTASPMASQLKSSFASSVTRGLGVPRGISGNPFRVSPAKRATSFTVKAIQSEKPTFQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
           AGPLRNT +AG AGSLAAGGL+ ILSICLTMYGVASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVAILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           QTADGWAKF+GGFFFGGISGVIWAYFLLYVL+LPYFV
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFV 217

[Close]

BLAST of Cp4.1LG07g08020 vs. TrEMBL
Match: A0A164Z5L9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.2e-95
Identity = 179/217 (82.49%), Postives = 198/217 (91.24%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHS-FTIRAIQADKPTYQV 294
           MA A S +ASQL S+FTSS TR L++PKG+S +PLR +P+R ++ FTI+A+QADKPTYQV
Sbjct: 1   MAAAASTMASQLKSSFTSSLTRGLVSPKGISGAPLRVLPSRRNTGFTIKAVQADKPTYQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHG  LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGLLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
           AGPLRNT +AG AGSLAAGGL+ ILSICLTMYG+ASF EGEPS AP+LTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVTILSICLTMYGIASFKEGEPSIAPALTLTGRKKQPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYFV
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFV 217

[Close]

BLAST of Cp4.1LG07g08020 vs. TAIR10
Match: AT4G12800.1 (AT4G12800.1 photosystem I subunit l)

HSP 1 Score: 339.3 bits (869), Expect = 4.0e-93
Identity = 170/218 (77.98%), Postives = 194/218 (88.99%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSN-TRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQ 294
           MA + SP+ASQL S+F+S++ ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 295 VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 354
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 355 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 414
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 415 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYFV
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFV 218

[Close]

BLAST of Cp4.1LG07g08020 vs. NCBI nr
Match: gi|659082462|ref|XP_008441854.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 411.8 bits (1057), Expect = 1.8e-111
Identity = 208/216 (96.30%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020 vs. NCBI nr
Match: gi|525507218|ref|NP_001267647.1| (photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus])

HSP 1 Score: 409.8 bits (1052), Expect = 6.9e-111
Identity = 206/216 (95.37%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020 vs. NCBI nr
Match: gi|18202533|sp|Q39654.1|PSAL_CUCSA (RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI-L; AltName: Full=PSI subunit V; Flags: Precursor)

HSP 1 Score: 407.9 bits (1047), Expect = 2.6e-110
Identity = 205/216 (94.91%), Postives = 211/216 (97.69%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSP ASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020 vs. NCBI nr
Match: gi|703154935|ref|XP_010111072.1| (Photosystem I reaction center subunit XI [Morus notabilis])

HSP 1 Score: 369.8 bits (948), Expect = 7.9e-99
Identity = 186/216 (86.11%), Postives = 202/216 (93.52%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPART-HSFTIRAIQADKPTYQV 294
           MATATSP+ASQL S FTS  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
           AGPLRNT YAGGAGSLAA GL+VILSICLTMYGVASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYY 216

[Close]

BLAST of Cp4.1LG07g08020 vs. NCBI nr
Match: gi|1009118282|ref|XP_015875775.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 365.2 bits (936), Expect = 1.9e-97
Identity = 188/216 (87.04%), Postives = 200/216 (92.59%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHS-FTIRAIQADKPTYQV 294
           MATA SP+ASQL S+FTSS TRAL++PKGLS SPLR +P+R  S FTI+AIQ +KPT+QV
Sbjct: 1   MATA-SPMASQLKSSFTSSVTRALLSPKGLSASPLRLLPSRRRSSFTIKAIQPEKPTFQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
            GPLRNT YAGGAGSLAA GL+VILSICLTMYGVASFNEGEPS APSLTLTGRKK PDQL
Sbjct: 121 TGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSIAPSLTLTGRKKEPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
            TADGW+KFSGGFFFGGISGVIWAYFLLYVLDLPY+
Sbjct: 181 LTADGWSKFSGGFFFGGISGVIWAYFLLYVLDLPYY 215

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAL_CUCSA	1.6e-112	94.91	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PS...	[more]
PSAL_ARATH	7.1e-92	77.98	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
PSAL_SPIOL	4.6e-91	78.34	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAL_HORVU	1.2e-78	69.91	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PS...	[more]
PSAL_GUITH	2.6e-33	48.00	Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1	[more]

BLAST of Cp4.1LG07g08020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ8_CUCSA	4.8e-111	95.37	Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4...	[more]
W9SVH5_9ROSA	5.5e-99	86.11	Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 ...	[more]
A0A059A3M9_EUCGR	2.6e-96	83.49	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1	[more]
B9SMR5_RICCO	5.7e-96	84.33	Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus commu...	[more]
A0A164Z5L9_DAUCA	2.2e-95	82.49	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g08020 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12800.1	4.0e-93	77.98	photosystem I subunit l	[more]

BLAST of Cp4.1LG07g08020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082462\|ref\|XP_008441854.1\|	1.8e-111	96.30	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo...	[more]
gi\|525507218\|ref\|NP_001267647.1\|	6.9e-111	95.37	photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus]	[more]
gi\|18202533\|sp\|Q39654.1\|PSAL_CUCSA	2.6e-110	94.91	RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI...	[more]
gi\|703154935\|ref\|XP_010111072.1\|	7.9e-99	86.11	Photosystem I reaction center subunit XI [Morus notabilis]	[more]
gi\|1009118282\|ref\|XP_015875775.1\|	1.9e-97	87.04	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **INTERPRO**
Term	Definition
IPR003757	PSI_PsaL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009536	plastid
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g08020.1	Cp4.1LG07g08020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PRODOM	PD005947		coord: 294..441 score: 2.0E-57coord: 66..213 score: 2.0
IPR003757	Photosystem I PsaL, reaction centre subunit XI	GENE3D	G3DSA:1.20.1240.10		coord: 63..222 score: 1.7E-66coord: 291..450 score: 1.7
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 65..217 score: 3.6E-58coord: 293..445 score: 3.6
IPR003757	Photosystem I PsaL, reaction centre subunit XI	unknown	SSF81568	Photosystem I reaction center subunit XI, PsaL	coord: 294..451 score: 1.19E-53coord: 66..223 score: 1.19
None	No IPR available	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 8..224 score: 1.0E
None	No IPR available	PANTHER	PTHR34803:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC	coord: 8..224 score: 1.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g08020	Cucsa.178540	Cucumber (Gy14) v1	cgycpeB0492
Cp4.1LG07g08020	CmaCh05G007560	Cucurbita maxima (Rimu)	cmacpeB790
Cp4.1LG07g08020	CmoCh05G007990	Cucurbita moschata (Rifu)	cmocpeB743
Cp4.1LG07g08020	CmoCh12G009600	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g08020	Cla007940	Watermelon (97103) v1	cpewmB811
Cp4.1LG07g08020	Csa2G074240	Cucumber (Chinese Long) v2	cpecuB811
Cp4.1LG07g08020	MELO3C008731	Melon (DHL92) v3.5.1	cpemeB777
Cp4.1LG07g08020	ClCG11G010740	Watermelon (Charleston Gray)	cpewcgB723
Cp4.1LG07g08020	CSPI02G07220	Wild cucumber (PI 183967)	cpecpiB812
Cp4.1LG07g08020	Lsi11G008670	Bottle gourd (USVL1VR-Ls)	cpelsiB654
Cp4.1LG07g08020	MELO3C008731.2	Melon (DHL92) v3.6.1	cpemedB913
Cp4.1LG07g08020	CsaV3_2G009680	Cucumber (Chinese Long) v3	cpecucB1005
Cp4.1LG07g08020	Bhi06G000966	Wax gourd	cpewgoB1012
Cp4.1LG07g08020	Carg19841	Silver-seed gourd	carcpeB0238
Cp4.1LG07g08020	Carg26543	Silver-seed gourd	carcpeB1008

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG07g08020	Cp4.1LG11g06780	Cucurbita pepo (Zucchini)	cpecpeB142

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g08020	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g08020	Cucumber (Gy14) v2	cgybcpeB261
Cp4.1LG07g08020	Wax gourd	cpewgoB1016