Cucsa.178540 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178540
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Photosystem I reaction center subunit XI
Location	scaffold01227 : 835070 .. 836590 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCCACAAATTTCCATGGCCAGTGACAACCAACAACAAGAACTTAAACTAACCCCCAAAACCAAATCTAAAAATCTCACCTCAATCTTCTTCTCTGCCACTGATCCTTCCACAAGCCAAAGGCAGCAGAAGCAAAAGCAGCAGCCATGGCCACTGCAACCTCTCCCATTGCCAGCCAGCTCAGTTCCAGCTTCGCTTCATCCAACACGAGAGCTTTGATCTCTCCTAAAGGCCTCTCCGCTTCGCCCCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCATCCAAGCTGATAAGGTAATATAAGCAATACCATTTCTCAATTTTACATCATCTCCCTCTCTGTGGAGCTTTTAAGATATATATATTATATACCGTGTAATGTAATACTATTTCAAGGGATATTAACTTCAATCTCAACGAATCAGAGTAATATAAACGTATTAGTTGTATAGAAATTTAAAGAGTATATTTGAGAGTGCTTTTAATGTAAGTGTGTGTGGGACTTAAGAGGAGAGTTAACCAGAAAAAaTCTTTAAAATTTTATGTAAGGATATTAAGATGAAGAGAGTGAACATAAGTATAGCTCAAGGATAATTAGCATGTACACCTTCCATTATGGAGGATACCCAAATTGAAGAAGCCTGTAACGATTCGGTAGAGAAAAGATCCGTTAGTGAGAGAAAAATTGATGCAGAAAATGTATGTGAAGAGATTAATTAGATAAAAAAATAAAATGCAAATTGAATAAAAAAAAaCATGCCATGCAAAGATGTTAATGAGGTATTGAAACTGTTGCAGCCGACTTTCCAAGTGATTCAGCCGATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTATCTTTCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATAGAAGTGGGCCTGGCTCACGGTTTCTTTCTGGTTGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCAGGCTCGCTGGCTGCTGGGGGTCTCATTGTCATTTTGAGCGTCTGCTTGACAATGTATGGTGTTGCATCATTCAATGAAGGAGAGCCATCTACCGCACCATCATTGACTTTGACTGGCCGGAAGAAGACCCCTGATCCTCTCCAAACAGCCGATGGGTGGGCAAAATTCTCAGGCGGGTTTTTCTTCGGTGGTATCTCCGGTGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAGATTTTGTATCATTTTCTGTTTCTACAATGCAACTTCCATGTCTGTATTATGGAAACATAAAATTGTATATTTTCTGCCAAACCTCTTTGTTAGATCCTTTGTGATTGCATATCGATTTCCTTTTTGGAACTGTTATGTATGTACTCTACTTCCATTTGCTTCTTCACAAACAATAGCTTCTGTGCCACTGCATTAAAAACTGGTAGGAGGAGAATA

mRNA sequence

CCTCCCACAAATTTCCATGGCCAGTGACAACCAACAACAAGAACTTAAACTAACCCCCAAAACCAAATCTAAAAATCTCACCTCAATCTTCTTCTCTGCCACTGATCCTTCCACAAGCCAAAGGCAGCAGAAGCAAAAGCAGCAGCCATGGCCACTGCAACCTCTCCCATTGCCAGCCAGCTCAGTTCCAGCTTCGCTTCATCCAACACGAGAGCTTTGATCTCTCCTAAAGGCCTCTCCGCTTCGCCCCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCATCCAAGCTGATAAGCCGACTTTCCAAGTGATTCAGCCGATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTATCTTTCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATAGAAGTGGGCCTGGCTCACGGTTTCTTTCTGGTTGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCAGGCTCGCTGGCTGCTGGGGGTCTCATTGTCATTTTGAGCGTCTGCTTGACAATGTATGGTGTTGCATCATTCAATGAAGGAGAGCCATCTACCGCACCATCATTGACTTTGACTGGCCGGAAGAAGACCCCTGATCCTCTCCAAACAGCCGATGGGTGGGCAAAATTCTCAGGCGGGTTTTTCTTCGGTGGTATCTCCGGTGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAGATTTTGTATCATTTTCTGTTTCTACAATGCAACTTCCATGTCTGTATTATGGAAACATAAAATTGTATATTTTCTGCCAAACCTCTTTGTTAGATCCTTTGTGATTGCATATCGATTTCCTTTTTGGAACTGTTATGTATGTACTCTACTTCCATTTGCTTCTTCACAAACAATAGCTTCTGTGCCACTGCATTAAAAACTGGTAGGAGGAGAATA

Coding sequence (CDS)

ATGGCCACTGCAACCTCTCCCATTGCCAGCCAGCTCAGTTCCAGCTTCGCTTCATCCAACACGAGAGCTTTGATCTCTCCTAAAGGCCTCTCCGCTTCGCCCCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCATCCAAGCTGATAAGCCGACTTTCCAAGTGATTCAGCCGATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTATCTTTCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATAGAAGTGGGCCTGGCTCACGGTTTCTTTCTGGTTGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCAGGCTCGCTGGCTGCTGGGGGTCTCATTGTCATTTTGAGCGTCTGCTTGACAATGTATGGTGTTGCATCATTCAATGAAGGAGAGCCATCTACCGCACCATCATTGACTTTGACTGGCCGGAAGAAGACCCCTGATCCTCTCCAAACAGCCGATGGGTGGGCAAAATTCTCAGGCGGGTTTTTCTTCGGTGGTATCTCCGGTGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAG

Protein sequence

MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK*

Homology

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BLAST of Cucsa.178540 vs. Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 4.5e-120
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSP ASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of Cucsa.178540 vs. Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 350.5 bits (898), Expect = 1.3e-95
Identity = 172/219 (78.54%), Postives = 195/219 (89.04%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSN-TRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQ 60
           MA + SP+ASQL SSF+S++ ++ L  PKG+S +P    PT R  SFT+RA+++DK TFQ
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDP 180
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PD 
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+VK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of Cucsa.178540 vs. Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.7e-93
Identity = 169/219 (77.17%), Postives = 189/219 (86.30%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTH-SFTIRAIQADKPTFQ 60
           MA  TSP+ASQL S F    T+AL+ PKG+S   LR  P+ R H SFT+RAI+ +KPT+Q
Sbjct: 1   MAATTSPMASQLKSGFT---TKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDP 180
           KAGPLRNT YAG AGSLAA GL+VILS+CLTMYG+ASF EGEPS AP+LTLTGRKK PD 
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQ+ADGWAKF+GGFFFGG+SGV WA FL+YVLDLPYY K
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

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BLAST of Cucsa.178540 vs. Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-81
Identity = 152/218 (69.72%), Postives = 178/218 (81.65%), Query Frame = 1


Query: 1   MATATSP-IASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQV 60
           MATA +P +ASQ+  S  + +      P+G+S + L R P     F ++A+++DKPT+QV
Sbjct: 1   MATAYAPPMASQVMKSGLACS-----KPRGMSGASLTRRPR----FVVKAVKSDKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
            GPLRNT   G AG+L A GL+ ILSVCLTMYGVASFNEGEPSTAP LTLTGRKK  D L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTA+GW++F+GGFFFGG+SG +WAYFLLYVLDLPY+ K
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

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BLAST of Cucsa.178540 vs. Swiss-Prot
Match: PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-35
Identity = 75/150 (50.00%), Postives = 98/150 (65.33%), Query Frame = 1


Query: 58  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPF 117
           + I+P N DPF+G+L TPV++S      L NLPAYR  +SPLLRG+E+G+AHG+FL+GPF
Sbjct: 3   EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPF 62

Query: 118 VKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPD 177
            K GPLR T  A  AG L++ GLI+IL+ CL+MYG  SF               R  + D
Sbjct: 63  DKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKD 122

Query: 178 PLQTADGWAKFSGGFFFGGISGVIWAYFLL 208
           PLQTA+GW +F+ GF  G + G  +AY LL
Sbjct: 123 PLQTAEGWGQFTAGFLVGAVGGSGFAYLLL 138

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BLAST of Cucsa.178540 vs. TrEMBL
Match: A0A0A0LHJ8_CUCSA (Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.3e-118
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of Cucsa.178540 vs. TrEMBL
Match: W9SVH5_9ROSA (Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 7.7e-103
Identity = 188/218 (86.24%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRT-HSFTIRAIQADKPTFQV 60
           MATATSP+ASQL S+F S  +RAL+SPKGLSASPLR +P+R   SFT++A+Q++KPTFQV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
           AGPLRNT YAGGAGSLAA GL+VILS+CLTMYGVASFNEGEPSTAPSLTLTGRKK PD L
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYY K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

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BLAST of Cucsa.178540 vs. TrEMBL
Match: A0A059A3M9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 2.1e-100
Identity = 183/219 (83.56%), Postives = 204/219 (93.15%), Query Frame = 1


Query: 1   MATAT-SPIASQLSSSFASSNTRALISPKGLSASPLRRIPTR-THSFTIRAIQADKPTFQ 60
           MA AT SP+ASQL SSFASS++R+LI+PKGLS S  R +PTR T SFT++AIQ++KPTFQ
Sbjct: 1   MAAATASPMASQLKSSFASSSSRSLIAPKGLSGSSFRALPTRRTRSFTVKAIQSEKPTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QP+NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPLNGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDP 180
           KAGPLRNT YAG AGSLAAGGL+VILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKK PD 
Sbjct: 121 KAGPLRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFNEGEPSTAPSLTLTGRKKEPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQTA+GWAKF+GGFFFGGISGV WAYFLLYVL+LPY+VK
Sbjct: 181 LQTANGWAKFTGGFFFGGISGVTWAYFLLYVLNLPYFVK 219

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BLAST of Cucsa.178540 vs. TrEMBL
Match: B9SMR5_RICCO (Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus communis GN=RCOM_1628230 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.2e-99
Identity = 183/218 (83.94%), Postives = 197/218 (90.37%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQV 60
           MAT  SP+ASQL SSFASS TR L  P+G+S +P R  P  R  SFT++AIQ++KPTFQV
Sbjct: 1   MATTASPMASQLKSSFASSVTRGLGVPRGISGNPFRVSPAKRATSFTVKAIQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
           AGPLRNT +AG AGSLAAGGL+ ILS+CLTMYGVASFNEGEPSTAPSLTLTGRKK PD L
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVAILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTADGWAKF+GGFFFGGISGVIWAYFLLYVL+LPY+VK
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218

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BLAST of Cucsa.178540 vs. TrEMBL
Match: K4CAE9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.4e-98
Identity = 179/220 (81.36%), Postives = 199/220 (90.45%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRA--LISPKGLSASPLRRIP-TRTHSFTIRAIQADKPTF 60
           MATA SP+ASQL SSF SS TR   L++PKG+S +P +  P TR   FTI+A+QADKPTF
Sbjct: 1   MATAASPMASQLKSSFTSSLTRGHGLVTPKGISGAPFKIFPSTRKSCFTIKAVQADKPTF 60

Query: 61  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPF 120
           QVIQP+NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPF
Sbjct: 61  QVIQPLNGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPF 120

Query: 121 VKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPD 180
           VKAGPLRNTAYAGGAGSLAA GL+VILS+CLT+YG++SF EG+PSTAP+LTLTGRKK PD
Sbjct: 121 VKAGPLRNTAYAGGAGSLAAAGLVVILSMCLTIYGISSFKEGDPSTAPALTLTGRKKVPD 180

Query: 181 PLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
            LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+VK
Sbjct: 181 QLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 220

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BLAST of Cucsa.178540 vs. TAIR10
Match: AT4G12800.1 (AT4G12800.1 photosystem I subunit l)

HSP 1 Score: 350.5 bits (898), Expect = 7.4e-97
Identity = 172/219 (78.54%), Postives = 195/219 (89.04%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSN-TRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQ 60
           MA + SP+ASQL SSF+S++ ++ L  PKG+S +P    PT R  SFT+RA+++DK TFQ
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDP 180
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PD 
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+VK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of Cucsa.178540 vs. NCBI nr
Match: gi|525507218|ref|NP_001267647.1| (photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus])

HSP 1 Score: 433.7 bits (1114), Expect = 1.9e-118
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Cucsa.178540 vs. NCBI nr
Match: gi|659082462|ref|XP_008441854.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 432.2 bits (1110), Expect = 5.5e-118
Identity = 215/217 (99.08%), Postives = 217/217 (100.00%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Cucsa.178540 vs. NCBI nr
Match: gi|18202533|sp|Q39654.1|PSAL_CUCSA (RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI-L; AltName: Full=PSI subunit V; Flags: Precursor)

HSP 1 Score: 431.8 bits (1109), Expect = 7.1e-118
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSP ASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Cucsa.178540 vs. NCBI nr
Match: gi|703154935|ref|XP_010111072.1| (Photosystem I reaction center subunit XI [Morus notabilis])

HSP 1 Score: 381.3 bits (978), Expect = 1.1e-102
Identity = 188/218 (86.24%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRT-HSFTIRAIQADKPTFQV 60
           MATATSP+ASQL S+F S  +RAL+SPKGLSASPLR +P+R   SFT++A+Q++KPTFQV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
           AGPLRNT YAGGAGSLAA GL+VILS+CLTMYGVASFNEGEPSTAPSLTLTGRKK PD L
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYY K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

[Close]

BLAST of Cucsa.178540 vs. NCBI nr
Match: gi|1009118282|ref|XP_015875775.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 376.7 bits (966), Expect = 2.7e-101
Identity = 191/218 (87.61%), Postives = 200/218 (91.74%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHS-FTIRAIQADKPTFQV 60
           MATA SP+ASQL SSF SS TRAL+SPKGLSASPLR +P+R  S FTI+AIQ +KPTFQV
Sbjct: 1   MATA-SPMASQLKSSFTSSVTRALLSPKGLSASPLRLLPSRRRSSFTIKAIQPEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
            GPLRNT YAGGAGSLAA GL+VILS+CLTMYGVASFNEGEPS APSLTLTGRKK PD L
Sbjct: 121 TGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSIAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
            TADGW+KFSGGFFFGGISGVIWAYFLLYVLDLPYY K
Sbjct: 181 LTADGWSKFSGGFFFGGISGVIWAYFLLYVLDLPYYFK 217

The following BLAST results are available for this feature:

BLAST of Cucsa.178540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAL_CUCSA	4.5e-120	99.54	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PS...	[more]
PSAL_ARATH	1.3e-95	78.54	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
PSAL_SPIOL	4.7e-93	77.17	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAL_HORVU	1.1e-81	69.72	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PS...	[more]
PSAL_PORPU	3.4e-35	50.00	Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1	[more]

BLAST of Cucsa.178540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ8_CUCSA	1.3e-118	100.00	Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4...	[more]
W9SVH5_9ROSA	7.7e-103	86.24	Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 ...	[more]
A0A059A3M9_EUCGR	2.1e-100	83.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1	[more]
B9SMR5_RICCO	5.2e-99	83.94	Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus commu...	[more]
K4CAE9_SOLLC	4.4e-98	81.36	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cucsa.178540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12800.1	7.4e-97	78.54	photosystem I subunit l	[more]

BLAST of Cucsa.178540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507218\|ref\|NP_001267647.1\|	1.9e-118	100.00	photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus]	[more]
gi\|659082462\|ref\|XP_008441854.1\|	5.5e-118	99.08	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo...	[more]
gi\|18202533\|sp\|Q39654.1\|PSAL_CUCSA	7.1e-118	99.54	RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI...	[more]
gi\|703154935\|ref\|XP_010111072.1\|	1.1e-102	86.24	Photosystem I reaction center subunit XI [Morus notabilis]	[more]
gi\|1009118282\|ref\|XP_015875775.1\|	2.7e-101	87.61	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003757	PSI_PsaL

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.178540.1	Cucsa.178540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PRODOM	PD005947		coord: 60..207 score: 1.0
IPR003757	Photosystem I PsaL, reaction centre subunit XI	GENE3D	G3DSA:1.20.1240.10		coord: 58..216 score: 5.6
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 59..211 score: 7.6
IPR003757	Photosystem I PsaL, reaction centre subunit XI	unknown	SSF81568	Photosystem I reaction center subunit XI, PsaL	coord: 60..216 score: 2.35
None	No IPR available	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 2..217 score: 9.0E
None	No IPR available	PANTHER	PTHR34803:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC	coord: 2..217 score: 9.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.178540	Cla007940	Watermelon (97103) v1	cgywmB342
Cucsa.178540	Csa2G074240	Cucumber (Chinese Long) v2	cgycuB274
Cucsa.178540	MELO3C008731	Melon (DHL92) v3.5.1	cgymeB320
Cucsa.178540	ClCG11G010740	Watermelon (Charleston Gray)	cgywcgB319
Cucsa.178540	CSPI02G07220	Wild cucumber (PI 183967)	cgycpiB284
Cucsa.178540	CmaCh05G007560	Cucurbita maxima (Rimu)	cgycmaB0510
Cucsa.178540	CmoCh05G007990	Cucurbita moschata (Rifu)	cgycmoB0510
Cucsa.178540	CmoCh12G009600	Cucurbita moschata (Rifu)	cgycmoB0509
Cucsa.178540	Lsi11G008670	Bottle gourd (USVL1VR-Ls)	cgylsiB300
Cucsa.178540	Cp4.1LG11g06780	Cucurbita pepo (Zucchini)	cgycpeB0491
Cucsa.178540	Cp4.1LG07g08020	Cucurbita pepo (Zucchini)	cgycpeB0492
Cucsa.178540	MELO3C008731.2	Melon (DHL92) v3.6.1	cgymedB315
Cucsa.178540	CsaV3_2G009680	Cucumber (Chinese Long) v3	cgycucB287
Cucsa.178540	Cla97C11G216950	Watermelon (97103) v2	cgywmbB323
Cucsa.178540	Bhi06G000966	Wax gourd	cgywgoB368
Cucsa.178540	Carg19841	Silver-seed gourd	carcgyB0204
Cucsa.178540	Carg26543	Silver-seed gourd	carcgyB0805

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.178540	Wax gourd	cgywgoB366
Cucsa.178540	Cucurbita maxima (Rimu)	cgycmaB0509