Carg26543 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26543
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem I reaction center subunit XI
Location	Cucurbita_argyrosperma_scaffold_367 : 21494 .. 23229 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAATATGGATAAGGGATAAGATGACGTGGCAAGTTCCATCCAATGAGAAGAGAGAGGGTTGATCAACCAAAGCCTCCCACAAATTTCCATGGCCACTAACAATAAACCAACACCCAAAGCCAAATCTAAAATCCTCACCTCATTCTTCTCTGCCATTGATCCTTTCACAAACCAAAGGCAGCAGAAGCAGCAGCCATGGCCAGTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCACGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGGTAACCCAATGCATAATTCCCCTCTCTTTCAGCTTTCGAGATATATATACTGTACTATTTCAAGGGATACGAACTTAAAGATCTCTATAAGTTCAGTAAGAATTTGTTGAGGATTGTTGGGAGAGGAGTCCCTCGTCAGCTAATTATTAGGACCTACATCTCCATTAGTATGAGGTATTTTGGGGAAGCCCATAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCGTTGTGGAGAGCCGTGATTTCTAACATGGTATTAGAGCCACACTCTTAACTTAGCCATGTCAATAGAATCCTCAAATGTCAAACAAAGGGTGTACTTTGTTTGAGGGCTCCAGAGAAGGAGTCGAGCCTCGGTTAAAGGGAGGCTATTTGAGTGCTCCATAGGCCTCAAGGGAGGCTGTATGGTGTACTTTGTTCGAGGGGAGTATTGTTGGGAGAGGAGTCCCACATCGGCTAATTAAGGGGTTGATCATGGGTTTATAAGCAAGGACTACGTCTCCATTGATATGAGGCTTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTAGGCTCAAAGTGGACAATCTCATACCATTGTGGAGAGTCGTTATTACTAGCCGAATTCAATCATTAGTGTGTTGGCTTTTAAAAAAAAATGTTATTCTTCTTTGAAGAACACTTCCACATGTTAATAACCTATTGAAACTGTTGCAGCCAACTTACCAAGTGATTCAGCCCATCAACGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGACGGGTGGGCAAAATTCTCTGGCGGGTTCTTCTTTGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAGATTTTGCATCATTTTTCTGTTTCTGCAATGCAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATTTCAAACCTCTTTGTTAGATCCTTTGTCATTGCATATTGATTTCCCTTTTGAAACTGTTGTGTTCTCATGTTCCATTTGTTTCTTCACAAACTAT

mRNA sequence

AAAAAAATATGGATAAGGGATAAGATGACGTGGCAAGTTCCATCCAATGAGAAGAGAGAGGGTTGATCAACCAAAGCCTCCCACAAATTTCCATGGCCACTAACAATAAACCAACACCCAAAGCCAAATCTAAAATCCTCACCTCATTCTTCTCTGCCATTGATCCTTTCACAAACCAAAGGCAGCAGAAGCAGCAGCCATGGCCAGTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCACGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAACGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGACGGGTGGGCAAAATTCTCTGGCGGGTTCTTCTTTGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAGATTTTGCATCATTTTTCTGTTTCTGCAATGCAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATTTCAAACCTCTTTGTTAGATCCTTTGTCATTGCATATTGATTTCCCTTTTGAAACTGTTGTGTTCTCATGTTCCATTTGTTTCTTCACAAACTAT

Coding sequence (CDS)

ATGGCCAGTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCACGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAACGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGACGGGTGGGCAAAATTCTCTGGCGGGTTCTTCTTTGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAG

Protein sequence

MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK

Homology

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BLAST of Carg26543 vs. NCBI nr
Match: XP_022937709.1 (photosystem I reaction center subunit XI, chloroplastic [Cucurbita moschata])

HSP 1 Score: 423.3 bits (1087), Expect = 4.9e-115
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60
           MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRR+PARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg26543 vs. NCBI nr
Match: XP_023536879.1 (photosystem I reaction center subunit XI, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023538619.1 photosystem I reaction center subunit XI, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 422.5 bits (1085), Expect = 8.4e-115
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg26543 vs. NCBI nr
Match: XP_022965497.1 (photosystem I reaction center subunit XI, chloroplastic [Cucurbita maxima])

HSP 1 Score: 421.0 bits (1081), Expect = 2.4e-114
Identity = 215/217 (99.08%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSPIASQLSSAFTSSNTRALIAPKGLS SPLRRVPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSAFTSSNTRALIAPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg26543 vs. NCBI nr
Match: XP_022149833.1 (photosystem I reaction center subunit XI, chloroplastic [Momordica charantia])

HSP 1 Score: 414.8 bits (1065), Expect = 1.7e-112
Identity = 211/217 (97.24%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSPIASQLSS+F SSNTRALI+PKGLS SPLRRVPARTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKK PDQLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKAPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of Carg26543 vs. NCBI nr
Match: XP_008441854.1 (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 411.4 bits (1056), Expect = 1.9e-111
Identity = 208/217 (95.85%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of Carg26543 vs. TAIR10
Match: AT4G12800.1 (photosystem I subunit l)

HSP 1 Score: 340.9 bits (873), Expect = 5.8e-94
Identity = 171/219 (78.08%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSN-TRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQ 60
           MA++ SP+ASQL S+F+S++ ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of Carg26543 vs. Swiss-Prot
Match: sp|Q39654|PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus OX=3659 GN=PSAL PE=2 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 9.1e-113
Identity = 205/217 (94.47%), Postives = 212/217 (97.70%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSP ASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of Carg26543 vs. Swiss-Prot
Match: sp|Q9SUI4|PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAL PE=1 SV=2)

HSP 1 Score: 340.9 bits (873), Expect = 1.0e-92
Identity = 171/219 (78.08%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSN-TRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQ 60
           MA++ SP+ASQL S+F+S++ ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of Carg26543 vs. Swiss-Prot
Match: sp|Q41385|PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAL PE=1 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.2e-91
Identity = 170/219 (77.63%), Postives = 191/219 (87.21%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPA--RTHSFTIRAIQADKPTYQ 60
           MA+ TSP+ASQL S FT   T+AL+ PKG+S   LR  P+  R  SFT+RAI+ +KPTYQ
Sbjct: 1   MAATTSPMASQLKSGFT---TKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAA GL+VILS+CLTMYG+ASF EGEPS AP+LTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQ+ADGWAKF+GGFFFGG+SGV WA FL+YVLDLPY+ K
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

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BLAST of Carg26543 vs. Swiss-Prot
Match: sp|P23993|PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAL PE=1 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.1e-79
Identity = 152/218 (69.72%), Postives = 177/218 (81.19%), Query Frame = 0


Query: 1   MASA-TSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQV 60
           MA+A   P+ASQ+       +  A   P+G+S + L R P     F ++A+++DKPTYQV
Sbjct: 1   MATAYAPPMASQV-----MKSGLACSKPRGMSGASLTRRP----RFVVKAVKSDKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 180
            GPLRNT   G AG+L A GL+ ILS+CLTMYGVASFNEGEPSTAP LTLTGRKK  D+L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTA+GW++F+GGFFFGG+SG +WAYFLLYVLDLPYF K
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

[Close]

BLAST of Carg26543 vs. Swiss-Prot
Match: sp|O78469|PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta OX=55529 GN=psaL PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 72/150 (48.00%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 58  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPF 117
           Q ++P N DPF+G+L TP+T+S      LSNLPAYR  +SPLLRG+E+G+ HG+FLVGPF
Sbjct: 3   QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62

Query: 118 VKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPD 177
            K GPLRN+  A  AG  +A GLI+I++ CL +YGV SFN  +                +
Sbjct: 63  YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------E 122

Query: 178 QLQTADGWAKFSGGFFFGGISGVIWAYFLL 208
           QLQ+A GW +F+ G+  G I G  +AY L+
Sbjct: 123 QLQSAKGWRQFTSGWLVGSIGGASFAYILI 138

[Close]

BLAST of Carg26543 vs. TrEMBL
Match: tr|A0A1S3B555|A0A1S3B555_CUCME (photosystem I reaction center subunit XI, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485887 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.3e-111
Identity = 208/217 (95.85%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Carg26543 vs. TrEMBL
Match: tr|A0A0A0LHJ8|A0A0A0LHJ8_CUCSA (Photosystem I reaction center subunit XI OS=Cucumis sativus OX=3659 GN=Csa_2G074240 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 4.9e-111
Identity = 206/217 (94.93%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 60
           MA+ATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of Carg26543 vs. TrEMBL
Match: tr|W9SVH5|W9SVH5_9ROSA (Photosystem I reaction center subunit XI OS=Morus notabilis OX=981085 GN=L484_015127 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 9.5e-99
Identity = 186/218 (85.32%), Postives = 203/218 (93.12%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQV 60
           MA+ATSP+ASQL S FTS  +RAL++PKGLS SPLR +P+ R  SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+VILSICLTMYGVASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

[Close]

BLAST of Carg26543 vs. TrEMBL
Match: tr|A0A2P5C2F0|A0A2P5C2F0_9ROSA (Photosystem I PsaL, reaction centre subunit XI OS=Trema orientalis OX=63057 GN=TorRG33x02_299970 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 3.6e-98
Identity = 184/218 (84.40%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQV 60
           MA+ATSP+ SQL S FTS  +RAL++PKGLS SPLR +P+ R  SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMVSQLKSNFTSPLSRALLSPKGLSASPLRLLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+VILSICLT YG+ASFNEGEPS+APSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTQYGIASFNEGEPSSAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYYFK 218

[Close]

BLAST of Carg26543 vs. TrEMBL
Match: tr|A0A2P5CUI2|A0A2P5CUI2_PARAD (Photosystem I PsaL, reaction centre subunit XI OS=Parasponia andersonii OX=3476 GN=PanWU01x14_121740 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.1e-97
Identity = 183/218 (83.94%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MASATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQV 60
           MA+ATSP+ SQL S FTS  +RAL++PKGLS SPLR +P+ R  SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMVSQLKSNFTSPLSRALLSPKGLSASPLRLLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+VILSICLT YG+ASFNEGEPS+APSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTQYGIASFNEGEPSSAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKF+GGFFFGGISGVIWA+FLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAFFLLYVLDLPYYFK 218

The following BLAST results are available for this feature:

BLAST of Carg26543 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937709.1	4.9e-115	99.54	photosystem I reaction center subunit XI, chloroplastic [Cucurbita moschata]	[more]
XP_023536879.1	8.4e-115	99.54	photosystem I reaction center subunit XI, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022965497.1	2.4e-114	99.08	photosystem I reaction center subunit XI, chloroplastic [Cucurbita maxima]	[more]
XP_022149833.1	1.7e-112	97.24	photosystem I reaction center subunit XI, chloroplastic [Momordica charantia]	[more]
XP_008441854.1	1.9e-111	95.85	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo...	[more]

BLAST of Carg26543 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12800.1	5.8e-94	78.08	photosystem I subunit l	[more]

BLAST of Carg26543 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39654\|PSAL_CUCSA	9.1e-113	94.47	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus OX=36...	[more]
sp\|Q9SUI4\|PSAL_ARATH	1.0e-92	78.08	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|Q41385\|PSAL_SPIOL	1.2e-91	77.63	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea OX=...	[more]
sp\|P23993\|PSAL_HORVU	5.1e-79	69.72	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare OX=45...	[more]
sp\|O78469\|PSAL_GUITH	1.4e-33	48.00	Photosystem I reaction center subunit XI OS=Guillardia theta OX=55529 GN=psaL PE...	[more]

BLAST of Carg26543 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B555\|A0A1S3B555_CUCME	1.3e-111	95.85	photosystem I reaction center subunit XI, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0LHJ8\|A0A0A0LHJ8_CUCSA	4.9e-111	94.93	Photosystem I reaction center subunit XI OS=Cucumis sativus OX=3659 GN=Csa_2G074...	[more]
tr\|W9SVH5\|W9SVH5_9ROSA	9.5e-99	85.32	Photosystem I reaction center subunit XI OS=Morus notabilis OX=981085 GN=L484_01...	[more]
tr\|A0A2P5C2F0\|A0A2P5C2F0_9ROSA	3.6e-98	84.40	Photosystem I PsaL, reaction centre subunit XI OS=Trema orientalis OX=63057 GN=T...	[more]
tr\|A0A2P5CUI2\|A0A2P5CUI2_PARAD	1.1e-97	83.94	Photosystem I PsaL, reaction centre subunit XI OS=Parasponia andersonii OX=3476 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR022980	PSI_suXI
IPR036592	PSI_PsaL_sf
IPR003757	PSI_PsaL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26543-RA	Carg26543-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 59..211 e-value: 4.4E-59 score: 198.3
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PRODOM	PD005947		coord: 60..207 e-value: 5.0E-58 score: 568.0
IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	GENE3D	G3DSA:1.20.1240.10		coord: 54..217 e-value: 6.2E-76 score: 255.5
IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	SUPERFAMILY	SSF81568	Photosystem I reaction center subunit XI, PsaL	coord: 60..216
IPR022980	Photosystem I, reaction centre subunit XI	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 1..217
None	No IPR available	PANTHER	PTHR34803:SF5	SUBFAMILY NOT NAMED	coord: 1..217

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26543	Cla007940	Watermelon (97103) v1	carwmB0715
Carg26543	Csa2G074240	Cucumber (Chinese Long) v2	carcuB0736
Carg26543	MELO3C008731	Melon (DHL92) v3.5.1	carmeB0712
Carg26543	ClCG11G010740	Watermelon (Charleston Gray)	carwcgB0693
Carg26543	CSPI02G07220	Wild cucumber (PI 183967)	carcpiB0752
Carg26543	Cucsa.178540	Cucumber (Gy14) v1	carcgyB0805
Carg26543	CmaCh05G007560	Cucurbita maxima (Rimu)	carcmaB1003
Carg26543	CmaCh12G009590	Cucurbita maxima (Rimu)	carcmaB1002
Carg26543	CmoCh12G009600	Cucurbita moschata (Rifu)	carcmoB0975
Carg26543	CmoCh05G007990	Cucurbita moschata (Rifu)	carcmoB0976
Carg26543	Lsi11G008670	Bottle gourd (USVL1VR-Ls)	carlsiB655
Carg26543	Cp4.1LG07g08020	Cucurbita pepo (Zucchini)	carcpeB1008
Carg26543	Cp4.1LG11g06780	Cucurbita pepo (Zucchini)	carcpeB1007
Carg26543	MELO3C008731.2	Melon (DHL92) v3.6.1	carmedB0725
Carg26543	CsaV3_2G009680	Cucumber (Chinese Long) v3	carcucB0755
Carg26543	Cla97C11G216950	Watermelon (97103) v2	carwmbB0748
Carg26543	Bhi06G000966	Wax gourd	carwgoB0844

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26543	Carg19841	Silver-seed gourd	carcarB202

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26543	Cucumber (Gy14) v2	carcgybB0714