CmoCh05G007990 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G007990
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem I reaction center subunit XI
Location	Cmo_Chr05 : 4665706 .. 4667636 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGCTTAAGCTAAATCCCAAAACCAAATCTAAAAATCTCACCTCATTCATCTTCTTCTCTGCCACTGATTCTTCCACAAGCCAAAGGCAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGGTAATCTAACCAACCATCATCTCCCAATTCTATTTCATCTGCCTAGCTTTGAGCTTTTTAAGAAATATTTCATGCCAAGTAATGTATACTATTTCAAGGGATACTAACTTAAAATCTCCACAAATCAAACAAATATAAATGTATTAGTTGTATAAAGATGTGAGATCCCACGGTTGTGGAGTGGAGAGGAGAACGAAACGTTCTTTTACAAGGGTGTGGAAACCTCTCCTTAGCTTCCGCGTTTTAAAAACCTTGAGGACACTATTTGCTAGACACTTGATGATGAGTCAGCGAATAATCTGACCCCGGAAAGAGAGTGGATTGGGAGGTCCCACATCGATTGGAGAAGGGAACAAGTGTCAGCGAGGACGCTAGGCCCTGAAGAGGGTGGATTGTGAGATCCCACATCGGGTGAGGAGGAGAATGAAACATTCTTTATAAGGGTGTGAAAACCTCTCCCTAGCAGATGCGTTGTAAAAACTTTGAGGGGAAACCCGAAATAGATAGCCCAAAAAGGACAATATAGCTGTGGGTTTGAACTCATACAAAAAATATCATAGCCCGCCGGGAGAGTAGGCTGAGCCCTAAAAGGAGGTGGACACGAGGCAGCGTGCCAGCAAGAACGCTGGGCCCCAAAAGGGGGTGAATTGGGGGGTCCCACATCGATTGGAGAAGAGCGAGGACATTGGGCCTTCAAAGTGGGTGGATTGTGAGATCCCACACCGATTGGGAAAGAGAACGAAACATTTTAGGGTGTGGAAACCTCTCCCTACCAGACATTTTTTAAAAACTTTGAGAGAAAACTCGAAAGAGAAAGTCCAAAGAAGATAATATCTGTTAGTGTTGGACTTGGACCGTTACATACAACAAGATTTAAAAGAGGTGTTTTGGGAGTGCATTTATTGTTGAACACTTCTCCATATAATAATAAGCTATTGATATTGTTGCAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAGATTTTGTATCATCTTCTGTTCCTGCAATGTAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATGCCAAACCTCTTTGCTAGATCCTTTGTGATTGCATATTGATTTCCTTTCTAGAACTGTTATGTATGCACCCTCCTTCCATTTAAGAAAAGCTATTCTCTTAAGTCTAATCCAAGCCTTGGACGCATCATGGAATGGATCAAAAAAACTGAAC

mRNA sequence

ATAAGCTTAAGCTAAATCCCAAAACCAAATCTAAAAATCTCACCTCATTCATCTTCTTCTCTGCCACTGATTCTTCCACAAGCCAAAGGCAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAGATTTTGTATCATCTTCTGTTCCTGCAATGTAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATGCCAAACCTCTTTGCTAGATCCTTTGTGATTGCATATTGATTTCCTTTCTAGAACTGTTATGTATGCACCCTCCTTCCATTTAAGAAAAGCTATTCTCTTAAGTCTAATCCAAGCCTTGGACGCATCATGGAATGGATCAAAAAAACTGAAC

Coding sequence (CDS)

ATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAG

Homology

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BLAST of CmoCh05G007990 vs. Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 4.9e-111
Identity = 202/217 (93.09%), Postives = 210/217 (96.77%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSP ASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of CmoCh05G007990 vs. Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 7.9e-93
Identity = 175/219 (79.91%), Postives = 191/219 (87.21%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPA-RTH-SFTIRAIQADKPTYQ 60
           MA  TSP+ASQL S F   TT+ALV PKG+S   LR  P+ R H SFT+RAI+ +KPTYQ
Sbjct: 1   MAATTSPMASQLKSGF---TTKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAA GL+ ILS+CLTMYGIASF EGEPS AP+LTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQ+ADGWAKFTGGFFFGG+SGV WA FL+YVLDLPY+ K
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

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BLAST of CmoCh05G007990 vs. Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 341.3 bits (874), Expect = 7.9e-93
Identity = 174/219 (79.45%), Postives = 192/219 (87.67%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFAS-STTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQ 60
           MA + SP+ASQL SSF+S S ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+ ILS+CLT+YGI+SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of CmoCh05G007990 vs. Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.5e-80
Identity = 153/218 (70.18%), Postives = 181/218 (83.03%), Query Frame = 1


Query: 1   MATATSP-IASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQV 60
           MATA +P +ASQ+  S  + +      P+G+S + L R P     F ++A+++DKPTYQV
Sbjct: 1   MATAYAPPMASQVMKSGLACSK-----PRGMSGASLTRRPR----FVVKAVKSDKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
            GPLRNT   G AG+L A GL++ILS+CLTMYG+ASFNEGEPSTAP LTLTGRKK  D+L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTA+GW++FTGGFFFGG+SG +WAYFLLYVLDLPYF K
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

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BLAST of CmoCh05G007990 vs. Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1


Query: 58  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPF 117
           Q ++P N DPF+G+L TP+T+S      LSNLPAYR  ++PLLRG+E+G+ HG+ LVGPF
Sbjct: 3   QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62

Query: 118 VKAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPD 177
            K GPLRN+  A  AG  +A GLI I++ CL +YG+ SFN  +                +
Sbjct: 63  YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------E 122

Query: 178 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
           QLQ+A GW +FT G+  G I G  +AY L+
Sbjct: 123 QLQSAKGWRQFTSGWLVGSIGGASFAYILI 138

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BLAST of CmoCh05G007990 vs. TrEMBL
Match: A0A0A0LHJ8_CUCSA (Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.4e-109
Identity = 203/217 (93.55%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of CmoCh05G007990 vs. TrEMBL
Match: W9SVH5_9ROSA (Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.9e-99
Identity = 185/218 (84.86%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPART-HSFTIRAIQADKPTYQV 60
           MATATSP+ASQL S+F S  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+ ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

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BLAST of CmoCh05G007990 vs. TrEMBL
Match: A0A059A3M9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-98
Identity = 187/219 (85.39%), Postives = 204/219 (93.15%), Query Frame = 1


Query: 1   MATAT-SPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPAR-THSFTIRAIQADKPTYQ 60
           MA AT SP+ASQL SSFASS++R+L+APKGLS S  R +P R T SFT++AIQ++KPT+Q
Sbjct: 1   MAAATASPMASQLKSSFASSSSRSLIAPKGLSGSSFRALPTRRTRSFTVKAIQSEKPTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QP+NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFV
Sbjct: 61  VVQPLNGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAAGGL+ ILSICLTMYGIASFNEGEPSTAPSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFNEGEPSTAPSLTLTGRKKEPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTA+GWAKFTGGFFFGGISGV WAYFLLYVL+LPYFVK
Sbjct: 181 LQTANGWAKFTGGFFFGGISGVTWAYFLLYVLNLPYFVK 219

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BLAST of CmoCh05G007990 vs. TrEMBL
Match: B9SMR5_RICCO (Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus communis GN=RCOM_1628230 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 187/218 (85.78%), Postives = 201/218 (92.20%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQV 60
           MAT  SP+ASQL SSFASS TR L  P+G+S +P R  PA R  SFT++AIQ++KPT+QV
Sbjct: 1   MATTASPMASQLKSSFASSVTRGLGVPRGISGNPFRVSPAKRATSFTVKAIQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGFLLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT +AG AGSLAAGGL+AILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVAILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGVIWAYFLLYVL+LPYFVK
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218

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BLAST of CmoCh05G007990 vs. TrEMBL
Match: A0A164Z5L9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.3e-97
Identity = 185/218 (84.86%), Postives = 199/218 (91.28%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHS-FTIRAIQADKPTYQV 60
           MA A S +ASQL SSF SS TR LV+PKG+S +PLR +P+R ++ FTI+A+QADKPTYQV
Sbjct: 1   MAAAASTMASQLKSSFTSSLTRGLVSPKGISGAPLRVLPSRRNTGFTIKAVQADKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHG LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGLLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT +AG AGSLAAGGL+ ILSICLTMYGIASF EGEPS AP+LTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVTILSICLTMYGIASFKEGEPSIAPALTLTGRKKQPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 218

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BLAST of CmoCh05G007990 vs. TAIR10
Match: AT4G12800.1 (AT4G12800.1 photosystem I subunit l)

HSP 1 Score: 341.3 bits (874), Expect = 4.5e-94
Identity = 174/219 (79.45%), Postives = 192/219 (87.67%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFAS-STTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQ 60
           MA + SP+ASQL SSF+S S ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+ ILS+CLT+YGI+SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of CmoCh05G007990 vs. NCBI nr
Match: gi|659082462|ref|XP_008441854.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 405.6 bits (1041), Expect = 5.5e-110
Identity = 205/217 (94.47%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CmoCh05G007990 vs. NCBI nr
Match: gi|525507218|ref|NP_001267647.1| (photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus])

HSP 1 Score: 403.7 bits (1036), Expect = 2.1e-109
Identity = 203/217 (93.55%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CmoCh05G007990 vs. NCBI nr
Match: gi|18202533|sp|Q39654.1|PSAL_CUCSA (RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI-L; AltName: Full=PSI subunit V; Flags: Precursor)

HSP 1 Score: 401.7 bits (1031), Expect = 7.9e-109
Identity = 202/217 (93.09%), Postives = 210/217 (96.77%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSP ASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CmoCh05G007990 vs. NCBI nr
Match: gi|703154935|ref|XP_010111072.1| (Photosystem I reaction center subunit XI [Morus notabilis])

HSP 1 Score: 369.0 bits (946), Expect = 5.7e-99
Identity = 185/218 (84.86%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPART-HSFTIRAIQADKPTYQV 60
           MATATSP+ASQL S+F S  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+ ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

[Close]

BLAST of CmoCh05G007990 vs. NCBI nr
Match: gi|720039471|ref|XP_010268316.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 367.9 bits (943), Expect = 1.3e-98
Identity = 186/215 (86.51%), Postives = 199/215 (92.56%), Query Frame = 1


Query: 4   ATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHS-FTIRAIQADKPTYQVIQP 63
           A SP+ASQL S+FASS TR L++P GLS +PLR +P+R    FT++A+QADKPTYQVIQP
Sbjct: 3   AASPMASQLKSNFASSLTRGLLSPNGLSGAPLRVLPSRRKPCFTVKAVQADKPTYQVIQP 62

Query: 64  INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKAGP 123
           INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFVKAGP
Sbjct: 63  INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGP 122

Query: 124 LRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQTA 183
           LRNT YAG AGSLAAGGL+ ILSICLTMYGIASF EGEPSTAPSLTLTGRKK PDQLQTA
Sbjct: 123 LRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFKEGEPSTAPSLTLTGRKKKPDQLQTA 182

Query: 184 DGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           DGWAKFTGGFFFGGISGVIWAYFLLYVL+LPYFVK
Sbjct: 183 DGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 217

The following BLAST results are available for this feature:

BLAST of CmoCh05G007990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAL_CUCSA	4.9e-111	93.09	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PS...	[more]
PSAL_SPIOL	7.9e-93	79.91	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAL_ARATH	7.9e-93	79.45	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
PSAL_HORVU	4.5e-80	70.18	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PS...	[more]
PSAL_GUITH	2.7e-32	46.67	Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1	[more]

BLAST of CmoCh05G007990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ8_CUCSA	1.4e-109	93.55	Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4...	[more]
W9SVH5_9ROSA	3.9e-99	84.86	Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 ...	[more]
A0A059A3M9_EUCGR	1.1e-98	85.39	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1	[more]
B9SMR5_RICCO	1.5e-98	85.78	Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus commu...	[more]
A0A164Z5L9_DAUCA	1.3e-97	84.86	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1	[more]

BLAST of CmoCh05G007990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12800.1	4.5e-94	79.45	photosystem I subunit l	[more]

BLAST of CmoCh05G007990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082462\|ref\|XP_008441854.1\|	5.5e-110	94.47	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo...	[more]
gi\|525507218\|ref\|NP_001267647.1\|	2.1e-109	93.55	photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus]	[more]
gi\|18202533\|sp\|Q39654.1\|PSAL_CUCSA	7.9e-109	93.09	RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI...	[more]
gi\|703154935\|ref\|XP_010111072.1\|	5.7e-99	84.86	Photosystem I reaction center subunit XI [Morus notabilis]	[more]
gi\|720039471\|ref\|XP_010268316.1\|	1.3e-98	86.51	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Nelumbo nuci...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003757	PSI_PsaL

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009536	plastid
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G007990.1	CmoCh05G007990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PRODOM	PD005947		coord: 60..207 score: 3.0
IPR003757	Photosystem I PsaL, reaction centre subunit XI	GENE3D	G3DSA:1.20.1240.10		coord: 57..216 score: 1.5
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 59..211 score: 9.3
IPR003757	Photosystem I PsaL, reaction centre subunit XI	unknown	SSF81568	Photosystem I reaction center subunit XI, PsaL	coord: 60..216 score: 5.89
None	No IPR available	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 2..217 score: 4.7E
None	No IPR available	PANTHER	PTHR34803:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC	coord: 2..217 score: 4.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G007990	Cucsa.178540	Cucumber (Gy14) v1	cgycmoB0510
CmoCh05G007990	CmaCh05G007560	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G007990	Cla007940	Watermelon (97103) v1	cmowmB760
CmoCh05G007990	Csa2G074240	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G007990	MELO3C008731	Melon (DHL92) v3.5.1	cmomeB725
CmoCh05G007990	ClCG11G010740	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G007990	CSPI02G07220	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G007990	Lsi11G008670	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G007990	Cp4.1LG11g06780	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G007990	Cp4.1LG07g08020	Cucurbita pepo (Zucchini)	cmocpeB743
CmoCh05G007990	MELO3C008731.2	Melon (DHL92) v3.6.1	cmomedB822
CmoCh05G007990	CsaV3_2G009680	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G007990	Cla97C11G216950	Watermelon (97103) v2	cmowmbB784
CmoCh05G007990	Bhi06G000966	Wax gourd	cmowgoB0924
CmoCh05G007990	CsGy2G007440	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G007990	Carg26543	Silver-seed gourd	carcmoB0976
CmoCh05G007990	Carg19841	Silver-seed gourd	carcmoB0232

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G007990	CmoCh12G009600	Cucurbita moschata (Rifu)	cmocmoB149

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G007990	Wax gourd	cmowgoB0933
CmoCh05G007990	Cucurbita maxima (Rimu)	cmacmoB191