CmoCh05G007990.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G007990.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem I reaction center subunit XI
Location	Cmo_Chr05 : 4665706 .. 4667636 (-)
Sequence length	981

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGCTTAAGCTAAATCCCAAAACCAAATCTAAAAATCTCACCTCATTCATCTTCTTCTCTGCCACTGATTCTTCCACAAGCCAAAGGCAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGGTAATCTAACCAACCATCATCTCCCAATTCTATTTCATCTGCCTAGCTTTGAGCTTTTTAAGAAATATTTCATGCCAAGTAATGTATACTATTTCAAGGGATACTAACTTAAAATCTCCACAAATCAAACAAATATAAATGTATTAGTTGTATAAAGATGTGAGATCCCACGGTTGTGGAGTGGAGAGGAGAACGAAACGTTCTTTTACAAGGGTGTGGAAACCTCTCCTTAGCTTCCGCGTTTTAAAAACCTTGAGGACACTATTTGCTAGACACTTGATGATGAGTCAGCGAATAATCTGACCCCGGAAAGAGAGTGGATTGGGAGGTCCCACATCGATTGGAGAAGGGAACAAGTGTCAGCGAGGACGCTAGGCCCTGAAGAGGGTGGATTGTGAGATCCCACATCGGGTGAGGAGGAGAATGAAACATTCTTTATAAGGGTGTGAAAACCTCTCCCTAGCAGATGCGTTGTAAAAACTTTGAGGGGAAACCCGAAATAGATAGCCCAAAAAGGACAATATAGCTGTGGGTTTGAACTCATACAAAAAATATCATAGCCCGCCGGGAGAGTAGGCTGAGCCCTAAAAGGAGGTGGACACGAGGCAGCGTGCCAGCAAGAACGCTGGGCCCCAAAAGGGGGTGAATTGGGGGGTCCCACATCGATTGGAGAAGAGCGAGGACATTGGGCCTTCAAAGTGGGTGGATTGTGAGATCCCACACCGATTGGGAAAGAGAACGAAACATTTTAGGGTGTGGAAACCTCTCCCTACCAGACATTTTTTAAAAACTTTGAGAGAAAACTCGAAAGAGAAAGTCCAAAGAAGATAATATCTGTTAGTGTTGGACTTGGACCGTTACATACAACAAGATTTAAAAGAGGTGTTTTGGGAGTGCATTTATTGTTGAACACTTCTCCATATAATAATAAGCTATTGATATTGTTGCAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAGATTTTGTATCATCTTCTGTTCCTGCAATGTAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATGCCAAACCTCTTTGCTAGATCCTTTGTGATTGCATATTGATTTCCTTTCTAGAACTGTTATGTATGCACCCTCCTTCCATTTAAGAAAAGCTATTCTCTTAAGTCTAATCCAAGCCTTGGACGCATCATGGAATGGATCAAAAAAACTGAAC

mRNA sequence

ATAAGCTTAAGCTAAATCCCAAAACCAAATCTAAAAATCTCACCTCATTCATCTTCTTCTCTGCCACTGATTCTTCCACAAGCCAAAGGCAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAGATTTTGTATCATCTTCTGTTCCTGCAATGTAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATGCCAAACCTCTTTGCTAGATCCTTTGTGATTGCATATTGATTTCCTTTCTAGAACTGTTATGTATGCACCCTCCTTCCATTTAAGAAAAGCTATTCTCTTAAGTCTAATCCAAGCCTTGGACGCATCATGGAATGGATCAAAAAAACTGAAC

Coding sequence (CDS)

ATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAG

Homology

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BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 4.9e-111
Identity = 202/217 (93.09%), Postives = 210/217 (96.77%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSP ASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 7.9e-93
Identity = 175/219 (79.91%), Postives = 191/219 (87.21%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPA-RTH-SFTIRAIQADKPTYQ 60
           MA  TSP+ASQL S F   TT+ALV PKG+S   LR  P+ R H SFT+RAI+ +KPTYQ
Sbjct: 1   MAATTSPMASQLKSGF---TTKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAA GL+ ILS+CLTMYGIASF EGEPS AP+LTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQ+ADGWAKFTGGFFFGG+SGV WA FL+YVLDLPY+ K
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

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BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 341.3 bits (874), Expect = 7.9e-93
Identity = 174/219 (79.45%), Postives = 192/219 (87.67%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFAS-STTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQ 60
           MA + SP+ASQL SSF+S S ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+ ILS+CLT+YGI+SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.5e-80
Identity = 153/218 (70.18%), Postives = 181/218 (83.03%), Query Frame = 1


Query: 1   MATATSP-IASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQV 60
           MATA +P +ASQ+  S  + +      P+G+S + L R P     F ++A+++DKPTYQV
Sbjct: 1   MATAYAPPMASQVMKSGLACSK-----PRGMSGASLTRRPR----FVVKAVKSDKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
            GPLRNT   G AG+L A GL++ILS+CLTMYG+ASFNEGEPSTAP LTLTGRKK  D+L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTA+GW++FTGGFFFGG+SG +WAYFLLYVLDLPYF K
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

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BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1


Query: 58  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPF 117
           Q ++P N DPF+G+L TP+T+S      LSNLPAYR  ++PLLRG+E+G+ HG+ LVGPF
Sbjct: 3   QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62

Query: 118 VKAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPD 177
            K GPLRN+  A  AG  +A GLI I++ CL +YG+ SFN  +                +
Sbjct: 63  YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------E 122

Query: 178 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
           QLQ+A GW +FT G+  G I G  +AY L+
Sbjct: 123 QLQSAKGWRQFTSGWLVGSIGGASFAYILI 138

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BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: A0A0A0LHJ8_CUCSA (Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.4e-109
Identity = 203/217 (93.55%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: W9SVH5_9ROSA (Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.9e-99
Identity = 185/218 (84.86%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPART-HSFTIRAIQADKPTYQV 60
           MATATSP+ASQL S+F S  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+ ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

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BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: A0A059A3M9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-98
Identity = 187/219 (85.39%), Postives = 204/219 (93.15%), Query Frame = 1


Query: 1   MATAT-SPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPAR-THSFTIRAIQADKPTYQ 60
           MA AT SP+ASQL SSFASS++R+L+APKGLS S  R +P R T SFT++AIQ++KPT+Q
Sbjct: 1   MAAATASPMASQLKSSFASSSSRSLIAPKGLSGSSFRALPTRRTRSFTVKAIQSEKPTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QP+NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFV
Sbjct: 61  VVQPLNGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAAGGL+ ILSICLTMYGIASFNEGEPSTAPSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFNEGEPSTAPSLTLTGRKKEPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTA+GWAKFTGGFFFGGISGV WAYFLLYVL+LPYFVK
Sbjct: 181 LQTANGWAKFTGGFFFGGISGVTWAYFLLYVLNLPYFVK 219

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BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: B9SMR5_RICCO (Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus communis GN=RCOM_1628230 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 187/218 (85.78%), Postives = 201/218 (92.20%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQV 60
           MAT  SP+ASQL SSFASS TR L  P+G+S +P R  PA R  SFT++AIQ++KPT+QV
Sbjct: 1   MATTASPMASQLKSSFASSVTRGLGVPRGISGNPFRVSPAKRATSFTVKAIQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGFLLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT +AG AGSLAAGGL+AILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVAILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGVIWAYFLLYVL+LPYFVK
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218

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BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: A0A164Z5L9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.3e-97
Identity = 185/218 (84.86%), Postives = 199/218 (91.28%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHS-FTIRAIQADKPTYQV 60
           MA A S +ASQL SSF SS TR LV+PKG+S +PLR +P+R ++ FTI+A+QADKPTYQV
Sbjct: 1   MAAAASTMASQLKSSFTSSLTRGLVSPKGISGAPLRVLPSRRNTGFTIKAVQADKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHG LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGLLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT +AG AGSLAAGGL+ ILSICLTMYGIASF EGEPS AP+LTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVTILSICLTMYGIASFKEGEPSIAPALTLTGRKKQPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 218

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BLAST of CmoCh05G007990.1 vs. TAIR10
Match: AT4G12800.1 (AT4G12800.1 photosystem I subunit l)

HSP 1 Score: 341.3 bits (874), Expect = 4.5e-94
Identity = 174/219 (79.45%), Postives = 192/219 (87.67%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFAS-STTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQ 60
           MA + SP+ASQL SSF+S S ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+ ILS+CLT+YGI+SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

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BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|659082462|ref|XP_008441854.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 405.6 bits (1041), Expect = 5.5e-110
Identity = 205/217 (94.47%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|525507218|ref|NP_001267647.1| (photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus])

HSP 1 Score: 403.7 bits (1036), Expect = 2.1e-109
Identity = 203/217 (93.55%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|18202533|sp|Q39654.1|PSAL_CUCSA (RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI-L; AltName: Full=PSI subunit V; Flags: Precursor)

HSP 1 Score: 401.7 bits (1031), Expect = 7.9e-109
Identity = 202/217 (93.09%), Postives = 210/217 (96.77%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSP ASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|703154935|ref|XP_010111072.1| (Photosystem I reaction center subunit XI [Morus notabilis])

HSP 1 Score: 369.0 bits (946), Expect = 5.7e-99
Identity = 185/218 (84.86%), Postives = 203/218 (93.12%), Query Frame = 1


Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPART-HSFTIRAIQADKPTYQV 60
           MATATSP+ASQL S+F S  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+ ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

[Close]

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|720039471|ref|XP_010268316.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 367.9 bits (943), Expect = 1.3e-98
Identity = 186/215 (86.51%), Postives = 199/215 (92.56%), Query Frame = 1


Query: 4   ATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHS-FTIRAIQADKPTYQVIQP 63
           A SP+ASQL S+FASS TR L++P GLS +PLR +P+R    FT++A+QADKPTYQVIQP
Sbjct: 3   AASPMASQLKSNFASSLTRGLLSPNGLSGAPLRVLPSRRKPCFTVKAVQADKPTYQVIQP 62

Query: 64  INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKAGP 123
           INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFVKAGP
Sbjct: 63  INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGP 122

Query: 124 LRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQTA 183
           LRNT YAG AGSLAAGGL+ ILSICLTMYGIASF EGEPSTAPSLTLTGRKK PDQLQTA
Sbjct: 123 LRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFKEGEPSTAPSLTLTGRKKKPDQLQTA 182

Query: 184 DGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           DGWAKFTGGFFFGGISGVIWAYFLLYVL+LPYFVK
Sbjct: 183 DGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 217

The following BLAST results are available for this feature:

BLAST of CmoCh05G007990.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAL_CUCSA	4.9e-111	93.09	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PS...	[more]
PSAL_SPIOL	7.9e-93	79.91	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAL_ARATH	7.9e-93	79.45	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
PSAL_HORVU	4.5e-80	70.18	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PS...	[more]
PSAL_GUITH	2.7e-32	46.67	Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1	[more]

BLAST of CmoCh05G007990.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ8_CUCSA	1.4e-109	93.55	Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4...	[more]
W9SVH5_9ROSA	3.9e-99	84.86	Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 ...	[more]
A0A059A3M9_EUCGR	1.1e-98	85.39	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1	[more]
B9SMR5_RICCO	1.5e-98	85.78	Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus commu...	[more]
A0A164Z5L9_DAUCA	1.3e-97	84.86	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1	[more]

BLAST of CmoCh05G007990.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12800.1	4.5e-94	79.45	photosystem I subunit l	[more]

BLAST of CmoCh05G007990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082462\|ref\|XP_008441854.1\|	5.5e-110	94.47	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo...	[more]
gi\|525507218\|ref\|NP_001267647.1\|	2.1e-109	93.55	photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus]	[more]
gi\|18202533\|sp\|Q39654.1\|PSAL_CUCSA	7.9e-109	93.09	RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI...	[more]
gi\|703154935\|ref\|XP_010111072.1\|	5.7e-99	84.86	Photosystem I reaction center subunit XI [Morus notabilis]	[more]
gi\|720039471\|ref\|XP_010268316.1\|	1.3e-98	86.51	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Nelumbo nuci...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003757	PSI_PsaL

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G007990	CmoCh05G007990	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G007990.1	CmoCh05G007990.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G007990.1.three_prime_UTR.1	CmoCh05G007990.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G007990.1.CDS.2	CmoCh05G007990.1.CDS.2	CDS
CmoCh05G007990.1.CDS.1	CmoCh05G007990.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G007990.1.five_prime_UTR.1	CmoCh05G007990.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G007990.1.exon.2	CmoCh05G007990.1.exon.2	exon
CmoCh05G007990.1.exon.1	CmoCh05G007990.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PRODOM	PD005947		coord: 60..207 score: 3.0
IPR003757	Photosystem I PsaL, reaction centre subunit XI	GENE3D	G3DSA:1.20.1240.10		coord: 57..216 score: 1.5
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 59..211 score: 9.3
IPR003757	Photosystem I PsaL, reaction centre subunit XI	unknown	SSF81568	Photosystem I reaction center subunit XI, PsaL	coord: 60..216 score: 5.89
None	No IPR available	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 2..217 score: 4.7E
None	No IPR available	PANTHER	PTHR34803:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC	coord: 2..217 score: 4.7E