CmoCh05G007990.1 (mRNA) Cucurbita moschata (Rifu)

NameCmoCh05G007990.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPhotosystem I reaction center subunit XI
LocationCmo_Chr05 : 4665706 .. 4667636 (-)
Sequence length981
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGCTTAAGCTAAATCCCAAAACCAAATCTAAAAATCTCACCTCATTCATCTTCTTCTCTGCCACTGATTCTTCCACAAGCCAAAGGCAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGGTAATCTAACCAACCATCATCTCCCAATTCTATTTCATCTGCCTAGCTTTGAGCTTTTTAAGAAATATTTCATGCCAAGTAATGTATACTATTTCAAGGGATACTAACTTAAAATCTCCACAAATCAAACAAATATAAATGTATTAGTTGTATAAAGATGTGAGATCCCACGGTTGTGGAGTGGAGAGGAGAACGAAACGTTCTTTTACAAGGGTGTGGAAACCTCTCCTTAGCTTCCGCGTTTTAAAAACCTTGAGGACACTATTTGCTAGACACTTGATGATGAGTCAGCGAATAATCTGACCCCGGAAAGAGAGTGGATTGGGAGGTCCCACATCGATTGGAGAAGGGAACAAGTGTCAGCGAGGACGCTAGGCCCTGAAGAGGGTGGATTGTGAGATCCCACATCGGGTGAGGAGGAGAATGAAACATTCTTTATAAGGGTGTGAAAACCTCTCCCTAGCAGATGCGTTGTAAAAACTTTGAGGGGAAACCCGAAATAGATAGCCCAAAAAGGACAATATAGCTGTGGGTTTGAACTCATACAAAAAATATCATAGCCCGCCGGGAGAGTAGGCTGAGCCCTAAAAGGAGGTGGACACGAGGCAGCGTGCCAGCAAGAACGCTGGGCCCCAAAAGGGGGTGAATTGGGGGGTCCCACATCGATTGGAGAAGAGCGAGGACATTGGGCCTTCAAAGTGGGTGGATTGTGAGATCCCACACCGATTGGGAAAGAGAACGAAACATTTTAGGGTGTGGAAACCTCTCCCTACCAGACATTTTTTAAAAACTTTGAGAGAAAACTCGAAAGAGAAAGTCCAAAGAAGATAATATCTGTTAGTGTTGGACTTGGACCGTTACATACAACAAGATTTAAAAGAGGTGTTTTGGGAGTGCATTTATTGTTGAACACTTCTCCATATAATAATAAGCTATTGATATTGTTGCAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAGATTTTGTATCATCTTCTGTTCCTGCAATGTAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATGCCAAACCTCTTTGCTAGATCCTTTGTGATTGCATATTGATTTCCTTTCTAGAACTGTTATGTATGCACCCTCCTTCCATTTAAGAAAAGCTATTCTCTTAAGTCTAATCCAAGCCTTGGACGCATCATGGAATGGATCAAAAAAACTGAAC

mRNA sequence

ATAAGCTTAAGCTAAATCCCAAAACCAAATCTAAAAATCTCACCTCATTCATCTTCTTCTCTGCCACTGATTCTTCCACAAGCCAAAGGCAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAGATTTTGTATCATCTTCTGTTCCTGCAATGTAACTTCCATGTCTGTGTTAAGGAAACATAAAATTGTATATTTCATGCCAAACCTCTTTGCTAGATCCTTTGTGATTGCATATTGATTTCCTTTCTAGAACTGTTATGTATGCACCCTCCTTCCATTTAAGAAAAGCTATTCTCTTAAGTCTAATCCAAGCCTTGGACGCATCATGGAATGGATCAAAAAAACTGAAC

Coding sequence (CDS)

ATGGCCACTGCAACCTCCCCCATTGCCAGTCAGCTCAGTTCCAGCTTTGCTTCTTCCACCACCAGAGCTTTGGTTGCTCCCAAAGGCCTCTCCGTTTCGCCGCTCCGACGCATCCCTGCAAGAACACACTCCTTCACTATCAGAGCCATCCAAGCTGATAAGCCAACTTACCAAGTGATCCAGCCAATCAATGGAGACCCATTCATTGGAAGCCTCGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTACCTCTCAAACCTCCCAGCCTACAGAACAGCAGTCAACCCATTGCTGAGGGGAATTGAAGTAGGTCTGGCACATGGTTTTCTTCTGGTCGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCTGGCTCACTGGCCGCCGGTGGTCTCATTGCCATTTTGAGCATCTGCTTGACAATGTATGGCATTGCATCCTTCAATGAAGGAGAGCCATCCACTGCACCATCATTGACCTTGACCGGCAGGAAAAAGACCCCTGATCAGCTGCAAACCGCTGACGGGTGGGCGAAATTCACTGGCGGGTTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTTTGTCAAGTAG
BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 4.9e-111
Identity = 202/217 (93.09%), Postives = 210/217 (96.77%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSP ASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 7.9e-93
Identity = 175/219 (79.91%), Postives = 191/219 (87.21%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPA-RTH-SFTIRAIQADKPTYQ 60
           MA  TSP+ASQL S F   TT+ALV PKG+S   LR  P+ R H SFT+RAI+ +KPTYQ
Sbjct: 1   MAATTSPMASQLKSGF---TTKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAA GL+ ILS+CLTMYGIASF EGEPS AP+LTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQ+ADGWAKFTGGFFFGG+SGV WA FL+YVLDLPY+ K
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 341.3 bits (874), Expect = 7.9e-93
Identity = 174/219 (79.45%), Postives = 192/219 (87.67%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFAS-STTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQ 60
           MA + SP+ASQL SSF+S S ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+ ILS+CLT+YGI+SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.5e-80
Identity = 153/218 (70.18%), Postives = 181/218 (83.03%), Query Frame = 1

Query: 1   MATATSP-IASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQV 60
           MATA +P +ASQ+  S  + +      P+G+S + L R P     F ++A+++DKPTYQV
Sbjct: 1   MATAYAPPMASQVMKSGLACSK-----PRGMSGASLTRRPR----FVVKAVKSDKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
            GPLRNT   G AG+L A GL++ILS+CLTMYG+ASFNEGEPSTAP LTLTGRKK  D+L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTA+GW++FTGGFFFGG+SG +WAYFLLYVLDLPYF K
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

BLAST of CmoCh05G007990.1 vs. Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 70/150 (46.67%), Postives = 95/150 (63.33%), Query Frame = 1

Query: 58  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPF 117
           Q ++P N DPF+G+L TP+T+S      LSNLPAYR  ++PLLRG+E+G+ HG+ LVGPF
Sbjct: 3   QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62

Query: 118 VKAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPD 177
            K GPLRN+  A  AG  +A GLI I++ CL +YG+ SFN  +                +
Sbjct: 63  YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------E 122

Query: 178 QLQTADGWAKFTGGFFFGGISGVIWAYFLL 208
           QLQ+A GW +FT G+  G I G  +AY L+
Sbjct: 123 QLQSAKGWRQFTSGWLVGSIGGASFAYILI 138

BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: A0A0A0LHJ8_CUCSA (Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.4e-109
Identity = 203/217 (93.55%), Postives = 211/217 (97.24%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: W9SVH5_9ROSA (Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.9e-99
Identity = 185/218 (84.86%), Postives = 203/218 (93.12%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPART-HSFTIRAIQADKPTYQV 60
           MATATSP+ASQL S+F S  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+ ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: A0A059A3M9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-98
Identity = 187/219 (85.39%), Postives = 204/219 (93.15%), Query Frame = 1

Query: 1   MATAT-SPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPAR-THSFTIRAIQADKPTYQ 60
           MA AT SP+ASQL SSFASS++R+L+APKGLS S  R +P R T SFT++AIQ++KPT+Q
Sbjct: 1   MAAATASPMASQLKSSFASSSSRSLIAPKGLSGSSFRALPTRRTRSFTVKAIQSEKPTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QP+NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFV
Sbjct: 61  VVQPLNGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNT YAG AGSLAAGGL+ ILSICLTMYGIASFNEGEPSTAPSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFNEGEPSTAPSLTLTGRKKEPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTA+GWAKFTGGFFFGGISGV WAYFLLYVL+LPYFVK
Sbjct: 181 LQTANGWAKFTGGFFFGGISGVTWAYFLLYVLNLPYFVK 219

BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: B9SMR5_RICCO (Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus communis GN=RCOM_1628230 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 187/218 (85.78%), Postives = 201/218 (92.20%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQV 60
           MAT  SP+ASQL SSFASS TR L  P+G+S +P R  PA R  SFT++AIQ++KPT+QV
Sbjct: 1   MATTASPMASQLKSSFASSVTRGLGVPRGISGNPFRVSPAKRATSFTVKAIQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGFLLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT +AG AGSLAAGGL+AILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVAILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGVIWAYFLLYVL+LPYFVK
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 218

BLAST of CmoCh05G007990.1 vs. TrEMBL
Match: A0A164Z5L9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.3e-97
Identity = 185/218 (84.86%), Postives = 199/218 (91.28%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHS-FTIRAIQADKPTYQV 60
           MA A S +ASQL SSF SS TR LV+PKG+S +PLR +P+R ++ FTI+A+QADKPTYQV
Sbjct: 1   MAAAASTMASQLKSSFTSSLTRGLVSPKGISGAPLRVLPSRRNTGFTIKAVQADKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHG LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGLLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT +AG AGSLAAGGL+ ILSICLTMYGIASF EGEPS AP+LTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVTILSICLTMYGIASFKEGEPSIAPALTLTGRKKQPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 218

BLAST of CmoCh05G007990.1 vs. TAIR10
Match: AT4G12800.1 (AT4G12800.1 photosystem I subunit l)

HSP 1 Score: 341.3 bits (874), Expect = 4.5e-94
Identity = 174/219 (79.45%), Postives = 192/219 (87.67%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFAS-STTRALVAPKGLSVSPLRRIPA-RTHSFTIRAIQADKPTYQ 60
           MA + SP+ASQL SSF+S S ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQ 180
           KAGPLRNTAYAG AGSLAA GL+ ILS+CLT+YGI+SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           LQTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPYFVK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|659082462|ref|XP_008441854.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 405.6 bits (1041), Expect = 5.5e-110
Identity = 205/217 (94.47%), Postives = 211/217 (97.24%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|525507218|ref|NP_001267647.1| (photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus])

HSP 1 Score: 403.7 bits (1036), Expect = 2.1e-109
Identity = 203/217 (93.55%), Postives = 211/217 (97.24%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSPIASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|18202533|sp|Q39654.1|PSAL_CUCSA (RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI-L; AltName: Full=PSI subunit V; Flags: Precursor)

HSP 1 Score: 401.7 bits (1031), Expect = 7.9e-109
Identity = 202/217 (93.09%), Postives = 210/217 (96.77%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHSFTIRAIQADKPTYQVI 60
           MATATSP ASQLSSSFASS TRAL++PKGLS SPLRRIP RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHGF LVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQ 180
           GPLRNTAYAGGAGSLAAGGLI ILS+CLTMYG+ASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           TADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|703154935|ref|XP_010111072.1| (Photosystem I reaction center subunit XI [Morus notabilis])

HSP 1 Score: 369.0 bits (946), Expect = 5.7e-99
Identity = 185/218 (84.86%), Postives = 203/218 (93.12%), Query Frame = 1

Query: 1   MATATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPART-HSFTIRAIQADKPTYQV 60
           MATATSP+ASQL S+F S  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRGIEVGLAHG+LLVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQL 180
           AGPLRNT YAGGAGSLAA GL+ ILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           QTADGWAKFTGGFFFGGISGV WAYFLLYVLDLPY+ K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

BLAST of CmoCh05G007990.1 vs. NCBI nr
Match: gi|720039471|ref|XP_010268316.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 367.9 bits (943), Expect = 1.3e-98
Identity = 186/215 (86.51%), Postives = 199/215 (92.56%), Query Frame = 1

Query: 4   ATSPIASQLSSSFASSTTRALVAPKGLSVSPLRRIPARTHS-FTIRAIQADKPTYQVIQP 63
           A SP+ASQL S+FASS TR L++P GLS +PLR +P+R    FT++A+QADKPTYQVIQP
Sbjct: 3   AASPMASQLKSNFASSLTRGLLSPNGLSGAPLRVLPSRRKPCFTVKAVQADKPTYQVIQP 62

Query: 64  INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGIEVGLAHGFLLVGPFVKAGP 123
           INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRG+EVGLAHGFLLVGPFVKAGP
Sbjct: 63  INGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGP 122

Query: 124 LRNTAYAGGAGSLAAGGLIAILSICLTMYGIASFNEGEPSTAPSLTLTGRKKTPDQLQTA 183
           LRNT YAG AGSLAAGGL+ ILSICLTMYGIASF EGEPSTAPSLTLTGRKK PDQLQTA
Sbjct: 123 LRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFKEGEPSTAPSLTLTGRKKKPDQLQTA 182

Query: 184 DGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYFVK 218
           DGWAKFTGGFFFGGISGVIWAYFLLYVL+LPYFVK
Sbjct: 183 DGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFVK 217

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PSAL_CUCSA4.9e-11193.09Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PS... [more]
PSAL_SPIOL7.9e-9379.91Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=... [more]
PSAL_ARATH7.9e-9379.45Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ... [more]
PSAL_HORVU4.5e-8070.18Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PS... [more]
PSAL_GUITH2.7e-3246.67Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LHJ8_CUCSA1.4e-10993.55Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4... [more]
W9SVH5_9ROSA3.9e-9984.86Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 ... [more]
A0A059A3M9_EUCGR1.1e-9885.39Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1[more]
B9SMR5_RICCO1.5e-9885.78Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus commu... [more]
A0A164Z5L9_DAUCA1.3e-9784.86Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G12800.14.5e-9479.45 photosystem I subunit l[more]
Match NameE-valueIdentityDescription
gi|659082462|ref|XP_008441854.1|5.5e-11094.47PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo... [more]
gi|525507218|ref|NP_001267647.1|2.1e-10993.55photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus][more]
gi|18202533|sp|Q39654.1|PSAL_CUCSA7.9e-10993.09RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI... [more]
gi|703154935|ref|XP_010111072.1|5.7e-9984.86Photosystem I reaction center subunit XI [Morus notabilis][more]
gi|720039471|ref|XP_010268316.1|1.3e-9886.51PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Nelumbo nuci... [more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003757PSI_PsaL
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
GO:0009538photosystem I reaction center
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009522 photosystem I
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh05G007990CmoCh05G007990gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh05G007990.1CmoCh05G007990.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G007990.1.three_prime_UTR.1CmoCh05G007990.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G007990.1.CDS.2CmoCh05G007990.1.CDS.2CDS
CmoCh05G007990.1.CDS.1CmoCh05G007990.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G007990.1.five_prime_UTR.1CmoCh05G007990.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh05G007990.1.exon.2CmoCh05G007990.1.exon.2exon
CmoCh05G007990.1.exon.1CmoCh05G007990.1.exon.1exon


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003757Photosystem I PsaL, reaction centre subunit XIPRODOMPD005947coord: 60..207
score: 3.0
IPR003757Photosystem I PsaL, reaction centre subunit XIGENE3DG3DSA:1.20.1240.10coord: 57..216
score: 1.5
IPR003757Photosystem I PsaL, reaction centre subunit XIPFAMPF02605PsaLcoord: 59..211
score: 9.3
IPR003757Photosystem I PsaL, reaction centre subunit XIunknownSSF81568Photosystem I reaction center subunit XI, PsaLcoord: 60..216
score: 5.89
NoneNo IPR availablePANTHERPTHR34803FAMILY NOT NAMEDcoord: 2..217
score: 4.7E
NoneNo IPR availablePANTHERPTHR34803:SF2PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTICcoord: 2..217
score: 4.7E