Cp4.1LG07g08020.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g08020.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem I reaction center subunit XI
Location	Cp4.1LG07 : 7109947 .. 7114733 (-)
Sequence length	1548

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGGTAACCCAATGCATAATTCCACTCTTTTTCAGCTTTCGAGATATATATATATATATATATATAACGTACTCTTTCAAGGGATACTAACTTAAAGATCTCTACAAGTTGAGTAAGAATTTGTTGAGGATTGTTGGGAGAGGAGTCACACGTCAGCTAATTATTAGGACCTACATCTCCATTAGTACGAGGCCTTTTGGGGAAGCCCATAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGCCGTGATTCCTAACATGGTATTAGAGCCATACTCTTAATTTAGCCATGTCAACAGAATCCTCAAATGTCAAACAAAGAGTGTACTTTGTTTGAGGGCTCTAGAGAAGGAGTCGAGCCTCGGTTAAAGGGAGGCTATTTGAGTGCTCCATATGCCTCAAGGGAGGCTCTATGGTGTACTTTGTTCGAGGGGAGTATTGTTGGGAGAGGAGTCCCACATCGGCTAATTAAGGAGTTGATCATGGGTTTATAAGCAAGGACTACGTCTCCATTGATATGAGGCTTTTTGGGGAAGCCCAAAACAAAGCCATGAGAGCCATGAGAGCTTACGCTCAAAGTGGACAATCTCATAGTCGTTATTAGTAGCATAATTCAATCATTCGTAAAAAGTGTGTTTGCTTTTAAAAAAAATGTTATACTTCTTTGAAGAACACTTCCACATGTTAATAACCTATTGAAACTGTTGCAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAGATTTTGTATCGTTTTCTGTTTCTGCAATGCAACTTCCATGTCTGTGTTAAGGAAACATAAAAATTGTATATTTCATTTCAAACCTATTTGTTAGATCCTTTGTCATTGCATATTGATTTCCCTTTTGAAACTGTTGTGTTCTCATGTTCTATTTGTTTCTCACAAACTATAGCTTCAGTGGCTGCACTGTAAATTGGAGGGAGAACATCATCAGCACACTAGAAAGTGCTTTCAACTAAATTGCCTATGATAATTTTAGATCATATAAAACCAATTTTAAGCACTTTCTTCGAGACCACACGTAGAAAAGTTGTAACAACCTAAGCCCACCACTAGCAAATACTGTCCTCTTTGGGCTTTCCTTTTCGGGTTCCCCTTAAAGTTTTAAAACACGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATTCTTTGTTCCCCTCTCCAACTGACGTGGGATCTCACAATCCAACACCTTAAGGGCCCAACGTCCTCGCTGGCACACCGCTTGGTGTTTAGCTTTGAGACAATTTGTAACAGCCCAAGCCCACCGCTAGTAGATATTGTTCTTTTTGGGCTTTCCCTTTTAGGCTTTCCCTTTTAGGCTTTCCCTCAAGGTTAAAAGAGGTTTTCACATCCTTATAAGGAATTCTTTGTTCTCTTCTCCAACCGATGTGGAATCTCACAATCCACCCCCTTGGGGGCCTAGTGTTCTCGTTGGCACACCGCTCGGTGTTTGGCTATGATACCATTTGTAACAGCCCAAACCCACCGCTAACAGATATNCATTGAACAAAGTACGCCTCCCCTTAATCGAGGCTCGATTATTTTCCATAACCTAAAATTGAAGAAGGTTTTCATCCTCTCACTCTATCGTCGACTTGATTTTTTAAAGTTTTATTTACTAATTTAAAGTTTTTAAAATATTTTTTTAATTAAAACTTTTGTTTTTAATTAAAGTAAAATATTAATTCGTAAAAAATCAATTTATTTATTTTTAAAAATTATATTCCAAATAGAAGTTGTTGGAGACCTATTTAATTCGGATGGATTTATTATTATAAATAAATAATTAAAAAAAATATGGATAAGGGATAAGATGACGTGGCAAGTTCCATCCAATGAGAAGAGAGGGTTGATCAACCAAAGCCTCCCACAAATTTCCATGGCCACTAACAATAAACCAACACCCAAAGCCAAATCTAAAATCCTCACCTCATTCTTCTTCTTCTCTGCCATTGATCCTTTCACAAACCAAAGGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGGTAACCCAATGCATAATTCCACTCTTTTTCAGCTTTCGAGATATATATATATATATATATATAACGTACTCTTTCAAGGGATACTAACTTAAAGATCTCTACAAGTTGAGTAAGAATTTGTTGAGGATTGTTGGGAGAGGAGTCACACGTCAGCTAATTATTAGGACCTACATCTCCATTAGTACGAGGCCTTTTGGGGAAGCCCATAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGCCGTGATTCCTAACATGGTATTAGAGCCATACTCTTAATTTAGCCATGTCAACAGAATCCTCAAATGTCAAACAAAGAGTGTACTTTGTTTGAGGGCTCTAGAGAAGGAGTCGAGCCTCGGTTAAAGGGAGGCTATTTGAGTGCTCCATATGCCTCAAGGGAGGCTCTATGGTGTACTTTGTTCGAGGGGAGTATTGTTGGGAGAGGAGTCCCACATCGGCTAATTAAGGAGTTGATCATGGGTTTATAAGCAAGGACTACGTCTCCATTGATATGAGGCTTTTTGGGGAAGCCCAAAACAAAGCCATGAGAGCCATGAGAGCTTACGCTCAAAGTGGACAATCTCATAGTCGTTATTAGTAGCATAATTCAATCATTCGTAAAAAGTGTGTTTGCTTTTAAAAAAAATGTTATACTTCTTTGAAGAACACTTCCACATGTTAATAACCTATTGAAACTGTTGCAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAAGTAGATTTTGTATCGTTTTCTGTTTCTGCAATGCAACTTCCATGTCTGTGTTAAGGAAACATAAAAATTGTATATTTCATTTCAAACCTATTTGTTAGATCCTTTGTCATTGCATATTGATTTCCCTTTTGAAACTGTTGTGTTCTCATGTTCTATTTGTTTCTCACAAACTATAGCTTCAGTGGCTGCACTGTAAATTGGAGGGAGAACATCATCAGCACACTAGAAAGTGCTTTCAACTAAATTGCCTATGATAATTTTAGATCATATAAAACCAATTTTAAGCACTTTCTTCGAGACCACACGTAGAAAAGTTGTAACAACCTAAGCCCACCACTAGCAAATACTGTCCTCTTTGGGCTTTCCTTTTCGGGTTCCCCTTAAAGTTTTAAAACACGTCTGTTAGGGAGAGGTTTCCACACCCNATCAACCAAAGCCTCCCACAAATTTCCATGGCCACTAACAATAAACCAACACCCAAAGCCAAATCTAAAATCCTCACCTCATTCTTCTTCTTCTCTGCCATTGATCCTTTCACAAACCAAAGGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAG

mRNA sequence

GCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAACTTCAGTGGCTGCACTGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAACTTCAGTGGCTGCACTGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAG

Coding sequence (CDS)

GCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAACTTCAGTGGCTGCACTGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAGCCAACTTACCAAGTGATTCAGCCCATCAATGGAGACCCCTTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCTCTGATAGCCTGGTACCTCTCAAACCTCCCAGCTTACAGGACAGCAGTCAGTCCATTGCTGAGGGGAATTGAAGTCGGTTTGGCACATGGTTTTTTTCTCGTCGGTCCGTTTGTTAAAGCTGGTCCTCTGAGGAACACAGCCTACGCCGGAGGAGCTGGCTCGCTGGCCGCTGGCGGCCTCATTGTCATTTTGAGCATCTGCTTGACAATGTATGGAGTTGCATCCTTCAATGAAGGAGAGCCATCAACTGCACCGTCGTTGACCTTGACCGGTCGGAAGAAGACCCCGGATCAGCTGCAAACAGCTGATGGGTGGGCAAAATTCTCTGGCGGATTCTTCTTCGGCGGGATCTCCGGCGTGATCTGGGCGTACTTCCTCCTCTATGTCTTGGACCTTCCTTACTTCGTCAACTTCAGTGGCTGCACTGCAGCAGAAGCAGCAGCCATGGCCACTGCAACCTCCCCCATTGCCAGCCAGCTCAGTTCCGCCTTTACTTCATCGAACACTAGAGCTTTGATCGCTCCCAAAGGCCTCTCCGTCTCGCCGCTCCGACGCGTACCTGCAAGAACACACTCCTTCACCATCAGAGCCATACAAGCTGATAAG

Protein sequence

AAEAAAMATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVNFSGCTAAEAAAMATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVNFSGCTAAEAAAMATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADK

Homology

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BLAST of Cp4.1LG07g08020.1 vs. Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.6e-112
Identity = 205/216 (94.91%), Postives = 211/216 (97.69%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSP ASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

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BLAST of Cp4.1LG07g08020.1 vs. Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 7.1e-92
Identity = 170/218 (77.98%), Postives = 194/218 (88.99%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSN-TRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQ 294
           MA + SP+ASQL S+F+S++ ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 295 VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 354
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 355 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 414
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 415 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYFV
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFV 218

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BLAST of Cp4.1LG07g08020.1 vs. Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 4.6e-91
Identity = 170/217 (78.34%), Postives = 190/217 (87.56%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPA-RTH-SFTIRAIQADKPTYQ 294
           MA  TSP+ASQL S FT   T+AL+ PKG+S   LR  P+ R H SFT+RAI+ +KPTYQ
Sbjct: 1   MAATTSPMASQLKSGFT---TKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 295 VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 354
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 355 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 414
           KAGPLRNT YAG AGSLAA GL+VILS+CLTMYG+ASF EGEPS AP+LTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 415 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
           LQ+ADGWAKF+GGFFFGG+SGV WA FL+YVLDLPY+
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYY 214

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BLAST of Cp4.1LG07g08020.1 vs. Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.2e-78
Identity = 151/216 (69.91%), Postives = 178/216 (82.41%), Query Frame = 1


Query: 235 MATATSP-IASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQV 294
           MATA +P +ASQ+  +  + +      P+G+S + L R P     F ++A+++DKPTYQV
Sbjct: 1   MATAYAPPMASQVMKSGLACSK-----PRGMSGASLTRRPR----FVVKAVKSDKPTYQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
            GPLRNT   G AG+L A GL+ ILS+CLTMYGVASFNEGEPSTAP LTLTGRKK  D+L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
           QTA+GW++F+GGFFFGG+SG +WAYFLLYVLDLPYF
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYF 207

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BLAST of Cp4.1LG07g08020.1 vs. Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-33
Identity = 72/150 (48.00%), Postives = 97/150 (64.67%), Query Frame = 1


Query: 64  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPF 123
           Q ++P N DPF+G+L TP+T+S      LSNLPAYR  +SPLLRG+E+G+ HG+FLVGPF
Sbjct: 3   QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPF 62

Query: 124 VKAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPD 183
            K GPLRN+  A  AG  +A GLI+I++ CL +YGV SFN  +                +
Sbjct: 63  YKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------E 122

Query: 184 QLQTADGWAKFSGGFFFGGISGVIWAYFLL 214
           QLQ+A GW +F+ G+  G I G  +AY L+
Sbjct: 123 QLQSAKGWRQFTSGWLVGSIGGASFAYILI 138

[Close]

BLAST of Cp4.1LG07g08020.1 vs. TrEMBL
Match: A0A0A0LHJ8_CUCSA (Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 4.8e-111
Identity = 206/216 (95.37%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020.1 vs. TrEMBL
Match: W9SVH5_9ROSA (Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 5.5e-99
Identity = 186/216 (86.11%), Postives = 202/216 (93.52%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPART-HSFTIRAIQADKPTYQV 294
           MATATSP+ASQL S FTS  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
           AGPLRNT YAGGAGSLAA GL+VILSICLTMYGVASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYY 216

[Close]

BLAST of Cp4.1LG07g08020.1 vs. TrEMBL
Match: A0A059A3M9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.6e-96
Identity = 182/218 (83.49%), Postives = 202/218 (92.66%), Query Frame = 1


Query: 235 MATAT-SPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPAR-THSFTIRAIQADKPTYQ 294
           MA AT SP+ASQL S+F SS++R+LIAPKGLS S  R +P R T SFT++AIQ++KPT+Q
Sbjct: 1   MAAATASPMASQLKSSFASSSSRSLIAPKGLSGSSFRALPTRRTRSFTVKAIQSEKPTFQ 60

Query: 295 VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 354
           V+QP+NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VVQPLNGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 355 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 414
           KAGPLRNT YAG AGSLAAGGL+VILSICLTMYG+ASFNEGEPSTAPSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTEYAGAAGSLAAGGLVVILSICLTMYGIASFNEGEPSTAPSLTLTGRKKEPDQ 180

Query: 415 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           LQTA+GWAKF+GGFFFGGISGV WAYFLLYVL+LPYFV
Sbjct: 181 LQTANGWAKFTGGFFFGGISGVTWAYFLLYVLNLPYFV 218

[Close]

BLAST of Cp4.1LG07g08020.1 vs. TrEMBL
Match: B9SMR5_RICCO (Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus communis GN=RCOM_1628230 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 5.7e-96
Identity = 183/217 (84.33%), Postives = 197/217 (90.78%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQV 294
           MAT  SP+ASQL S+F SS TR L  P+G+S +P R  PA R  SFT++AIQ++KPT+QV
Sbjct: 1   MATTASPMASQLKSSFASSVTRGLGVPRGISGNPFRVSPAKRATSFTVKAIQSEKPTFQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
           AGPLRNT +AG AGSLAAGGL+ ILSICLTMYGVASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVAILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           QTADGWAKF+GGFFFGGISGVIWAYFLLYVL+LPYFV
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLNLPYFV 217

[Close]

BLAST of Cp4.1LG07g08020.1 vs. TrEMBL
Match: A0A164Z5L9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.2e-95
Identity = 179/217 (82.49%), Postives = 198/217 (91.24%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHS-FTIRAIQADKPTYQV 294
           MA A S +ASQL S+FTSS TR L++PKG+S +PLR +P+R ++ FTI+A+QADKPTYQV
Sbjct: 1   MAAAASTMASQLKSSFTSSLTRGLVSPKGISGAPLRVLPSRRNTGFTIKAVQADKPTYQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHG  LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGLLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
           AGPLRNT +AG AGSLAAGGL+ ILSICLTMYG+ASF EGEPS AP+LTLTGRKK PDQL
Sbjct: 121 AGPLRNTEFAGAAGSLAAGGLVTILSICLTMYGIASFKEGEPSIAPALTLTGRKKQPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYFV
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFV 217

[Close]

BLAST of Cp4.1LG07g08020.1 vs. TAIR10
Match: AT4G12800.1 (AT4G12800.1 photosystem I subunit l)

HSP 1 Score: 339.3 bits (869), Expect = 4.0e-93
Identity = 170/218 (77.98%), Postives = 194/218 (88.99%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSN-TRALIAPKGLSVSPLRRVPA-RTHSFTIRAIQADKPTYQ 294
           MA + SP+ASQL S+F+S++ ++ L  PKG+S +P    P  R  SFT+RA+++DK T+Q
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 295 VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 354
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 355 KAGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQ 414
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PDQ
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 415 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYFV
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFV 218

[Close]

BLAST of Cp4.1LG07g08020.1 vs. NCBI nr
Match: gi|659082462|ref|XP_008441854.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 411.8 bits (1057), Expect = 1.8e-111
Identity = 208/216 (96.30%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPTYQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020.1 vs. NCBI nr
Match: gi|525507218|ref|NP_001267647.1| (photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus])

HSP 1 Score: 409.8 bits (1052), Expect = 6.9e-111
Identity = 206/216 (95.37%), Postives = 212/216 (98.15%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSPIASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020.1 vs. NCBI nr
Match: gi|18202533|sp|Q39654.1|PSAL_CUCSA (RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI-L; AltName: Full=PSI subunit V; Flags: Precursor)

HSP 1 Score: 407.9 bits (1047), Expect = 2.6e-110
Identity = 205/216 (94.91%), Postives = 211/216 (97.69%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHSFTIRAIQADKPTYQVI 294
           MATATSP ASQLSS+F SSNTRALI+PKGLS SPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 295 QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 354
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 355 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 414
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 415 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFV 451
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+V
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYV 216

[Close]

BLAST of Cp4.1LG07g08020.1 vs. NCBI nr
Match: gi|703154935|ref|XP_010111072.1| (Photosystem I reaction center subunit XI [Morus notabilis])

HSP 1 Score: 369.8 bits (948), Expect = 7.9e-99
Identity = 186/216 (86.11%), Postives = 202/216 (93.52%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPART-HSFTIRAIQADKPTYQV 294
           MATATSP+ASQL S FTS  +RAL++PKGLS SPLR +P+R   SFT++A+Q++KPT+QV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
           AGPLRNT YAGGAGSLAA GL+VILSICLTMYGVASFNEGEPSTAPSLTLTGRKK PDQL
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYY 216

[Close]

BLAST of Cp4.1LG07g08020.1 vs. NCBI nr
Match: gi|1009118282|ref|XP_015875775.1| (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 365.2 bits (936), Expect = 1.9e-97
Identity = 188/216 (87.04%), Postives = 200/216 (92.59%), Query Frame = 1


Query: 235 MATATSPIASQLSSAFTSSNTRALIAPKGLSVSPLRRVPARTHS-FTIRAIQADKPTYQV 294
           MATA SP+ASQL S+FTSS TRAL++PKGLS SPLR +P+R  S FTI+AIQ +KPT+QV
Sbjct: 1   MATA-SPMASQLKSSFTSSVTRALLSPKGLSASPLRLLPSRRRSSFTIKAIQPEKPTFQV 60

Query: 295 IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 354
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 355 AGPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQL 414
            GPLRNT YAGGAGSLAA GL+VILSICLTMYGVASFNEGEPS APSLTLTGRKK PDQL
Sbjct: 121 TGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSIAPSLTLTGRKKEPDQL 180

Query: 415 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYF 450
            TADGW+KFSGGFFFGGISGVIWAYFLLYVLDLPY+
Sbjct: 181 LTADGWSKFSGGFFFGGISGVIWAYFLLYVLDLPYY 215

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08020.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAL_CUCSA	1.6e-112	94.91	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PS...	[more]
PSAL_ARATH	7.1e-92	77.98	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
PSAL_SPIOL	4.6e-91	78.34	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=...	[more]
PSAL_HORVU	1.2e-78	69.91	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PS...	[more]
PSAL_GUITH	2.6e-33	48.00	Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1	[more]

BLAST of Cp4.1LG07g08020.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ8_CUCSA	4.8e-111	95.37	Photosystem I reaction center subunit XI OS=Cucumis sativus GN=Csa_2G074240 PE=4...	[more]
W9SVH5_9ROSA	5.5e-99	86.11	Photosystem I reaction center subunit XI OS=Morus notabilis GN=L484_015127 PE=4 ...	[more]
A0A059A3M9_EUCGR	2.6e-96	83.49	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K023621 PE=4 SV=1	[more]
B9SMR5_RICCO	5.7e-96	84.33	Photosystem I reaction center subunit XI, chloroplast, putative OS=Ricinus commu...	[more]
A0A164Z5L9_DAUCA	2.2e-95	82.49	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018610 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g08020.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12800.1	4.0e-93	77.98	photosystem I subunit l	[more]

BLAST of Cp4.1LG07g08020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082462\|ref\|XP_008441854.1\|	1.8e-111	96.30	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo...	[more]
gi\|525507218\|ref\|NP_001267647.1\|	6.9e-111	95.37	photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus]	[more]
gi\|18202533\|sp\|Q39654.1\|PSAL_CUCSA	2.6e-110	94.91	RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI...	[more]
gi\|703154935\|ref\|XP_010111072.1\|	7.9e-99	86.11	Photosystem I reaction center subunit XI [Morus notabilis]	[more]
gi\|1009118282\|ref\|XP_015875775.1\|	1.9e-97	87.04	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **INTERPRO**
Term	Definition
IPR003757	PSI_PsaL

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG07g08020	Cp4.1LG07g08020	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG07g08020.1	Cp4.1LG07g08020.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG07g08020.1:cds:007	Cp4.1LG07g08020.1:cds:007	CDS
Cp4.1LG07g08020.1:cds:006	Cp4.1LG07g08020.1:cds:006	CDS
Cp4.1LG07g08020.1:cds:005	Cp4.1LG07g08020.1:cds:005	CDS
Cp4.1LG07g08020.1:cds:004	Cp4.1LG07g08020.1:cds:004	CDS
Cp4.1LG07g08020.1:cds:003	Cp4.1LG07g08020.1:cds:003	CDS
Cp4.1LG07g08020.1:cds:002	Cp4.1LG07g08020.1:cds:002	CDS
Cp4.1LG07g08020.1:cds:001	Cp4.1LG07g08020.1:cds:001	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PRODOM	PD005947		coord: 294..441 score: 2.0E-57coord: 66..213 score: 2.0
IPR003757	Photosystem I PsaL, reaction centre subunit XI	GENE3D	G3DSA:1.20.1240.10		coord: 63..222 score: 1.7E-66coord: 291..450 score: 1.7
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 65..217 score: 3.6E-58coord: 293..445 score: 3.6
IPR003757	Photosystem I PsaL, reaction centre subunit XI	unknown	SSF81568	Photosystem I reaction center subunit XI, PsaL	coord: 294..451 score: 1.19E-53coord: 66..223 score: 1.19
None	No IPR available	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 8..224 score: 1.0E
None	No IPR available	PANTHER	PTHR34803:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC	coord: 8..224 score: 1.0E