Cp4.1LG04g01190 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g01190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description30S ribosomal protein S31, mitochondrial
LocationCp4.1LG04 : 898708 .. 898974 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGATCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGATCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGATCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI
Homology
[Close]
BLAST of Cp4.1LG04g01190 vs. Swiss-Prot
Match: RT31_ARATH (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana GN=At2g21290 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-25
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]
BLAST of Cp4.1LG04g01190 vs. Swiss-Prot
Match: RT31_ORYSJ (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-20
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 1 

Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          + CGRGDKKTK+GK FKGSYGNARPK+EKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

[Close]
BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: A0A0A0K141_CUCSA (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.5e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: A5AQK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029514 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSXPWPLPFKLI 88

[Close]
BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: F6I185_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00730 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSIPWPLPFKLI 88

[Close]
BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: M5VXZ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013856mg PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 67/99 (67.68%), Postives = 74/99 (74.75%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-----------PILCGRGDKKTKKGK 60
          MAMMQWCGAVAR V+  E+R+   T+S      V           PI+CGRGDKKTKKGK
Sbjct: 1  MAMMQWCGAVARRVLMTEQRALFTTTSSPSSSAVAAAAIMSSIGAPIVCGRGDKKTKKGK 60

Query: 61 IFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
           FKGSYGNARPKKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 RFKGSYGNARPKKEKKIERIKDKVEVPRSTPWPLPFKLI 99

[Close]
BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match: A0A061DYK3_THECC (30S ribosomal protein S31 OS=Theobroma cacao GN=TCM_006777 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-26
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQ CGAVAR VM  +R   +  S   V    PILCGRGDKKT+KGK FKGSYGNARP
Sbjct: 1  MAMMQLCGAVARRVMTLQRPPLTSASMSGVAAGAPILCGRGDKKTRKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEK I+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKMIERIKDKVEVPRSTPWPLPFKLI 88

[Close]
BLAST of Cp4.1LG04g01190 vs. TAIR10
Match: AT2G21290.1 (AT2G21290.1 unknown protein)

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-26
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]
BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|659094414|ref|XP_008448047.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]
BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|778722736|ref|XP_011658557.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.0e-38
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|147775816|emb|CAN75923.1| (hypothetical protein VITISV_029514 [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSXPWPLPFKLI 88

[Close]
BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|645262601|ref|XP_008236836.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Prunus mume])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLV-----------PILCGRGDKKTKKGK 60
          MAMMQWCGAVAR V+  E+R+   T+S +    V           PI+CGRGDKKTKKGK
Sbjct: 1  MAMMQWCGAVARRVLMTEQRALFTTTSSSSSSAVAAAARMSSIGAPIVCGRGDKKTKKGK 60

Query: 61 IFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
           FKGSYGNARPKKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 RFKGSYGNARPKKEKKIERIKDKVEVPRSTPWPLPFKLI 99

[Close]
BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match: gi|225427776|ref|XP_002268532.1| (PREDICTED: 30S ribosomal protein S31, mitochondrial [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGA AR +M       ++ SS +    VPILCGRGDKKTKKGK FKGSYGNARP
Sbjct: 1  MAMMQWCGAAARRMMTTMTERSTVASSSSAAMGVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP S PWPLPFKLI
Sbjct: 61 KKEKKIERIKDKVEVPRSIPWPLPFKLI 88

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g01190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT31_ARATH4.9e-2560.2030S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana GN=At2g21290 PE... [more]
RT31_ORYSJ3.6e-2083.0230S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09... [more]
BLAST of Cp4.1LG04g01190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K141_CUCSA3.5e-3894.3230S ribosomal protein S31, mitochondrial OS=Cucumis sativus GN=Csa_7G006280 PE=4... [more]
A5AQK5_VITVI2.1e-2772.73Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029514 PE=4 SV=1[more]
F6I185_VITVI2.1e-2772.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00730 PE=4 SV=... [more]
M5VXZ0_PRUPE3.6e-2767.68Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013856mg PE=4 SV=1[more]
A0A061DYK3_THECC3.1e-2672.7330S ribosomal protein S31 OS=Theobroma cacao GN=TCM_006777 PE=4 SV=1[more]
BLAST of Cp4.1LG04g01190 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21290.12.7e-2660.20 unknown protein[more]
BLAST of Cp4.1LG04g01190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094414|ref|XP_008448047.1|2.9e-3893.18PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo][more]
gi|778722736|ref|XP_011658557.1|5.0e-3894.32PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus][more]
gi|147775816|emb|CAN75923.1|3.1e-2772.73hypothetical protein VITISV_029514 [Vitis vinifera][more]
gi|645262601|ref|XP_008236836.1|3.1e-2767.68PREDICTED: 30S ribosomal protein S31, mitochondrial [Prunus mume][more]
gi|225427776|ref|XP_002268532.1|3.1e-2772.73PREDICTED: 30S ribosomal protein S31, mitochondrial [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g01190.1Cp4.1LG04g01190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34550FAMILY NOT NAMEDcoord: 1..88
score: 3.5
NoneNo IPR availablePANTHERPTHR34550:SF230S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 1..88
score: 3.5
NoneNo IPR availablePFAMPF17067RPS31coord: 32..80
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g01190Cucsa.377960Cucumber (Gy14) v1cgycpeB0994
Cp4.1LG04g01190CmaCh11G010720Cucurbita maxima (Rimu)cmacpeB147
Cp4.1LG04g01190CmaCh19G006940Cucurbita maxima (Rimu)cmacpeB540
Cp4.1LG04g01190CmoCh19G007050Cucurbita moschata (Rifu)cmocpeB495
Cp4.1LG04g01190CmoCh11G010950Cucurbita moschata (Rifu)cmocpeB127
Cp4.1LG04g01190Cla015884Watermelon (97103) v1cpewmB667
Cp4.1LG04g01190Csa7G006280Cucumber (Chinese Long) v2cpecuB696
Cp4.1LG04g01190MELO3C013419Melon (DHL92) v3.5.1cpemeB605
Cp4.1LG04g01190ClCG02G004560Watermelon (Charleston Gray)cpewcgB591
Cp4.1LG04g01190CSPI07G00400Wild cucumber (PI 183967)cpecpiB698
Cp4.1LG04g01190Lsi11G011400Bottle gourd (USVL1VR-Ls)cpelsiB532
Cp4.1LG04g01190MELO3C013419.2Melon (DHL92) v3.6.1cpemedB716
Cp4.1LG04g01190CsaV3_7G000400Cucumber (Chinese Long) v3cpecucB0869
Cp4.1LG04g01190CsGy7G000340Cucumber (Gy14) v2cgybcpeB970
Cp4.1LG04g01190Carg22932Silver-seed gourdcarcpeB0302
Cp4.1LG04g01190Carg19383Silver-seed gourdcarcpeB0438
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g01190Cp4.1LG15g05630Cucurbita pepo (Zucchini)cpecpeB270
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g01190Cucurbita pepo (Zucchini)cpecpeB496
Cp4.1LG04g01190Cucurbita pepo (Zucchini)cpecpeB501
Cp4.1LG04g01190Cucurbita moschata (Rifu)cmocpeB591
Cp4.1LG04g01190Bottle gourd (USVL1VR-Ls)cpelsiB575
Cp4.1LG04g01190Cucumber (Gy14) v2cgybcpeB239
Cp4.1LG04g01190Melon (DHL92) v3.6.1cpemedB747
Cp4.1LG04g01190Cucumber (Chinese Long) v3cpecucB0836
Cp4.1LG04g01190Wax gourdcpewgoB0849
Cp4.1LG04g01190Wax gourdcpewgoB0858
Cp4.1LG04g01190Wax gourdcpewgoB0861