Lsi05G001160 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGCATCTTCGAACGGATAAGTCAGGCAAGAGTGAGGGAGCCGGAGAGAATTCATTTTTTTTTTCTTTCAAATGGCCACTTTATCAATTCCACTCTCTCAAAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACGCCCACAAATCATATACCCTTTTCCCCATTCGCTCCCCCGTATCACCTGCTCTGGTTAGTTTTTCTTCTATCTCTTCAACTCTACTTCTATGGATTGATTTTCTCCAATAATTGCTAAACTGAGTACCCTTTTGTGGGTAAATTGCGTTAGAATCTGGGGAGAACTGTTTTCTTTTTACTCAATTCCTGCCCTTTGATGCCTATTATATCTTGTTAGGCTTAGGATCAAGATGCTGGTTCGCCAAATTGGCTAATTCTTTGAATGAGTTCAAAATTTGTAAAAAAAAATTCATGTTTTTGCATACCCTGAAATGTGCTTAGTCGAATTCAATTAGGGGTATTTGGTGGGCTGAGTTCCAATTTTAAAGTCTGAGTTAGTAAGTTTGTGTTTGGGGTGCAGAGTTGTTTAATTTGGAGTTGGGAAACATTAGAGGGTGGGAAAGAGAAAGAGGGGAAGATAAAGTTTTTCGATAAATGTGTAAACTACAATAGTGAATGTGGTTGAAGTTGGTGGAGTTGAGTTATAAAGTCGGTGAGCCAAACACTCCCTTATAAATCTTCACCACGTAGAGGGAAACGAATATCATGTGTAGTGGACGTTAACTGAACCTGCATCTAAGCATTATGAGTTATATTTTAATGGAGTTTTATCTGCCATGCCATTGTGTGCTCACTTACAGCTACTAGGGATGGGGCAGAACCAAGAGAGAATTTGTCACCCTGCAAGCATATTAGTACTGTAGCTTGTGGACTTCTTGCTGTTTGGACTTTGACAAATACCTCTCCTGTGATTGCAGCTAATCAGGTTAATAGCATTTTCTGTTGATTTATAGTTTATACATCTAAGTTTGGTAGAGTAGTAGTTTGTACCATAGAGAAATTATCAACTATTTGAAATATATTGATATAATTAAATTTACTGTAGTAATCCATCAACTTAAGTCCATGACAATTTACTGTAATATATTGACTAAATTCAAGTTTTGTATCATTTTCTTTTGATTTGTAGTTTGTAGTGATTTAACAATTGGCATAACATTTTAGAATAATGAAATGCTATTCAAATTTATCACGATGTTTGTGTACATGAGCCAAAAGTTTGCAAGCACCATTTCGAACTCACAATTTTTGCATTTAAATTTAGGCTTAAGATGTAAGACCTAGTTATCATTTTGGCGGATTGAGTGTGTTGGTTTGGAAGCCCTACTTTTCCATCTCCCTCCCCATCATTCTGAATCCACATCCCTTTCTGTCTGTCCTACAATACCGTGATTATAATGCTCTTTCTGATAGGATAACTTGTAAAATTTTCCCGATTCTAACTAAAATTCAGTTATTTACTTCACCAGTTGACATACAGTCATTGTCCTTCGGATACTCTATTTTCTTCTATTCTTGTTATGTTTTTCCTTTTATAGTCATGATTGACAAATGTTATTCACTTTCTGTGTCAAGTGTCAAACAACTCATAACATCTTACTTTGAAAAAGAAATCTGTTGATCTCATAATACCTGGGACTTGCAGAGGCTGCCTCCACTGTCGACAGAACCCAACCGATGCGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACGAATGAAAAAAATCAGTTAAAAGGAAAATCTCTTGCTGCTGCATTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTAATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTAAAACTCTCTCTATCTTGACCCCCATTCCAATAGGAGGTGGGTAGTTAACAAATCTTTCATATTCTAACACGAATTCCTCATTAAGCAACGGAGGACTTTCATTTTATACAATGACATAGTACATGTTTGGGAGTGATTCTATCATGTTTAAAAATATTTTGAAACACACTTTTAATCACTCAAAATCAATTCAATATTTAATTTTACAGTTTTAAATATGGTTTAGGGTTTTTTCATGCTATTACAGTTGATTTTGCATGATTTAAAAGCTTTTTTTCGAGTGATTTTAACCATTTTGAAATCACTCCAAACATGCCATAAGTTTTTAAACTCTGCTTTCAATACTTGATCTGGTACATAGACAAAATCCACGTGTTCAACACATGCTAGTTTATAGAATAAATCCCAGGCTCCAAAACTATTTAGGAATGCAGATGGTCCCATTTTAATTGTTAACTGAATGGAACATAAAATGATGTTTCATACTATTCTCTCTTCATGTGCTTCAAGTAAATGAATGGGAAGCCAAAAATGCATTCAAGTAGAATATTAAAAGTGTCATTATCTGTCTGTGAATGCCATAATTGATCCTTGCCATGGGTTTGCTAAAAATTATTTAAGTACTGTTTTTTTTTTTATTTTTTATTTTAAGGACTCCGAGATTCCTGAAGAAAAACTCAGAATATGGCTTCAAATATCATGACAAAGTTTCATATTGCAGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGGAAAGCCAATCTCCAAGGAGCTGTGTTCAAGAACACTGTCCTTTCAGGGTCGACATTTGATGACGCTCAATTGCAAGATGCAGTTTTTGAGGACACGATCATAGGCTACATTGATCTTCAGAAACTTTGTGTAAATCCAACTATTAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATAATTTCAATATAGTTTCAATACTTTCACTATATGTATTGTATAATCAACTTGATTATTTTTGTAGGTAATAAATATTCAAAAGAGAGAACTCCCTCTTAACTCCTGTTGAACCACCATGTGCTGCTTTCTATTTTCCATAAGGTTCTTTTGTTATTTCATTTAAG AGCATCTTCGAACGGATAAGTCAGGCAAGAGTGAGGGAGCCGGAGAGAATTCATTTTTTTTTTCTTTCAAATGGCCACTTTATCAATTCCACTCTCTCAAAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACGCCCACAAATCATATACCCTTTTCCCCATTCGCTCCCCCGTATCACCTGCTCTGCTACTAGGGATGGGGCAGAACCAAGAGAGAATTTGTCACCCTGCAAGCATATTAGTACTGTAGCTTGTGGACTTCTTGCTGTTTGGACTTTGACAAATACCTCTCCTGTGATTGCAGCTAATCAGAGGCTGCCTCCACTGTCGACAGAACCCAACCGATGCGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACGAATGAAAAAAATCAGTTAAAAGGAAAATCTCTTGCTGCTGCATTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTAATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTAAAACTCTCTCTATCTTGACCCCCATTCCAATAGGAGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGGAAAGCCAATCTCCAAGGAGCTGTGTTCAAGAACACTGTCCTTTCAGGGTCGACATTTGATGACGCTCAATTGCAAGATGCAGTTTTTGAGGACACGATCATAGGCTACATTGATCTTCAGAAACTTTGTGTAAATCCAACTATTAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATAATTTCAATATAGTTTCAATACTTTCACTATATGTATTGTATAATCAACTTGATTATTTTTGTAGGTAATAAATATTCAAAAGAGAGAACTCCCTCTTAACTCCTGTTGAACCACCATGTGCTGCTTTCTATTTTCCATAAGGTTCTTTTGTTATTTCATTTAAG ATGGCCACTTTATCAATTCCACTCTCTCAAAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACGCCCACAAATCATATACCCTTTTCCCCATTCGCTCCCCCGTATCACCTGCTCTGCTACTAGGGATGGGGCAGAACCAAGAGAGAATTTGTCACCCTGCAAGCATATTAGTACTGTAGCTTGTGGACTTCTTGCTGTTTGGACTTTGACAAATACCTCTCCTGTGATTGCAGCTAATCAGAGGCTGCCTCCACTGTCGACAGAACCCAACCGATGCGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACGAATGAAAAAAATCAGTTAAAAGGAAAATCTCTTGCTGCTGCATTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTAATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTAAAACTCTCTCTATCTTGACCCCCATTCCAATAGGAGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGGAAAGCCAATCTCCAAGGAGCTGTGTTCAAGAACACTGTCCTTTCAGGGTCGACATTTGATGACGCTCAATTGCAAGATGCAGTTTTTGAGGACACGATCATAGGCTACATTGATCTTCAGAAACTTTGTGTAAATCCAACTATTAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATAA MATLSIPLSQNGFSRRFFSAKRPQIIYPFPHSLPRITCSATRDGAEPRENLSPCKHISTVACGLLAVWTLTNTSPVIAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKNQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGKTLSILTPIPIGGVDFSNAVLDRVNFGKANLQGAVFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR
BLAST of Lsi05G001160 vs. Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL17 PE=1 SV=2) HSP 1 Score: 297.4 bits (760), Expect = 1.5e-79 Identity = 155/253 (61.26%), Postives = 189/253 (74.70%), Query Frame = 1
BLAST of Lsi05G001160 vs. Swiss-Prot
Match: TL203_ARATH (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.3 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 8.2e-09 Identity = 51/179 (28.49%), Postives = 80/179 (44.69%), Query Frame = 1
BLAST of Lsi05G001160 vs. Swiss-Prot
Match: RFR32_CYAA5 (Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08 Identity = 40/133 (30.08%), Postives = 64/133 (48.12%), Query Frame = 1
BLAST of Lsi05G001160 vs. TrEMBL
Match: A0A0A0LC74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238170 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 1.0e-122 Identity = 223/250 (89.20%), Postives = 230/250 (92.00%), Query Frame = 1
BLAST of Lsi05G001160 vs. TrEMBL
Match: W9QE42_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020914 PE=4 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 1.4e-95 Identity = 182/252 (72.22%), Postives = 209/252 (82.94%), Query Frame = 1
BLAST of Lsi05G001160 vs. TrEMBL
Match: V4TLV7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021983mg PE=4 SV=1) HSP 1 Score: 355.1 bits (910), Expect = 6.8e-95 Identity = 182/251 (72.51%), Postives = 204/251 (81.27%), Query Frame = 1
BLAST of Lsi05G001160 vs. TrEMBL
Match: B9I1Y5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02510g PE=4 SV=2) HSP 1 Score: 345.1 bits (884), Expect = 7.0e-92 Identity = 177/250 (70.80%), Postives = 203/250 (81.20%), Query Frame = 1
BLAST of Lsi05G001160 vs. TrEMBL
Match: A0A058ZZS0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00402 PE=4 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 1.1e-89 Identity = 177/250 (70.80%), Postives = 200/250 (80.00%), Query Frame = 1
BLAST of Lsi05G001160 vs. TAIR10
Match: AT5G53490.3 (AT5G53490.3 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 292.0 bits (746), Expect = 3.6e-79 Identity = 155/267 (58.05%), Postives = 189/267 (70.79%), Query Frame = 1
BLAST of Lsi05G001160 vs. TAIR10
Match: AT1G12250.1 (AT1G12250.1 Pentapeptide repeat-containing protein) HSP 1 Score: 62.4 bits (150), Expect = 4.6e-10 Identity = 51/179 (28.49%), Postives = 80/179 (44.69%), Query Frame = 1
BLAST of Lsi05G001160 vs. NCBI nr
Match: gi|659111944|ref|XP_008455988.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis melo]) HSP 1 Score: 458.0 bits (1177), Expect = 1.1e-125 Identity = 229/250 (91.60%), Postives = 233/250 (93.20%), Query Frame = 1
BLAST of Lsi05G001160 vs. NCBI nr
Match: gi|778680423|ref|XP_011651313.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis sativus]) HSP 1 Score: 447.6 bits (1150), Expect = 1.4e-122 Identity = 223/250 (89.20%), Postives = 230/250 (92.00%), Query Frame = 1
BLAST of Lsi05G001160 vs. NCBI nr
Match: gi|703066942|ref|XP_010087838.1| (hypothetical protein L484_020914 [Morus notabilis]) HSP 1 Score: 357.5 bits (916), Expect = 2.0e-95 Identity = 182/252 (72.22%), Postives = 209/252 (82.94%), Query Frame = 1
BLAST of Lsi05G001160 vs. NCBI nr
Match: gi|567897328|ref|XP_006441152.1| (hypothetical protein CICLE_v10021983mg [Citrus clementina]) HSP 1 Score: 355.1 bits (910), Expect = 9.7e-95 Identity = 182/251 (72.51%), Postives = 204/251 (81.27%), Query Frame = 1
BLAST of Lsi05G001160 vs. NCBI nr
Match: gi|568877960|ref|XP_006491985.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Citrus sinensis]) HSP 1 Score: 352.4 bits (903), Expect = 6.3e-94 Identity = 181/251 (72.11%), Postives = 203/251 (80.88%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |