Carg20340 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20340
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	thylakoid lumenal 17.4 kDa protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_178 : 135006 .. 136228 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCATCTAAACTTAGGCTAAAACCCAGTTTTTTTTTTCCAAGGACATCTTGTAATAATCTTGTGAGATCCCATATCGGTTGGGGAGGGGAACGAAACATTCTTTATAAGAATGTAGAACCTTTTAAAACCTTGAGAGTAACTGTGGAAGGAAAAGCCCTAAAAGGACAATATCTGGTAACGGCGGACTTAGATTGTTACAAATGGTATCGATTGGAGAGGGAAACGAAACATCTTCTTTTTTTAATATTCTTCCTTTTATATGTTCTTCCTTTTATAGTCATGATCAACAAAATTCGTTCACTTTGTGTGGCAAGTGTGAAACAACTCATTATATTTCACCTCGAGAAATAAACCTGTTGAACTCATAATATGATATGTGGGACTTGCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACTATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGCGACTACACAAATGATAAAAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCCTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCATATGCTGTTGGAGCCAGCTTCAAGGGTAAAATTCTCTCTTTCTTACCCCAACTCCAATAGCCAGGCGGATTGTGGACAAAGGAGAAAGACTTTGATTGGATCTCCCAACTCTAAAATCATGTATTTGCCTACAAATATTAATACTCATAACACGGGTTCAAACGTCATGATAACATTGCATATTGCAGGTGTCGATTTCTCGAACGCAGTTCTAGATAGGGTAAATTTTGGGAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTCAATTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAACTGTGTGTAAATCCAACTATTAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATATAGTCTGTGTATGTATTGTATTGTATTGTCTAGACAACTTAATGATTTTGGTAAGTAATACATATTCAAAGAGACAACTCCCTCTAACTTCTGTTGAAGAACAATGTGGTGTCACTGTCAAGTTCATGTTTTCCGTAATCTTCTTTCGTTGTTTCCTTAGGAACAAAATCTGATGTTTTTTCTTTTGAGT

mRNA sequence

TTGCATCTAAACTTAGGCTAAAACCCAGTTTTTTTTTTCCAAGGACATCTTGTAATAATCTTGTGAGATCCCATATCGGTTGGGGAGGGGAACGAAACATTCTTTATAAGAATGTAGAACCTTTTAAAACCTTGAGAGTAACTGTGGAAGGAAAAGCCCTAAAAGGACAATATCTGGTAACGGCGGACTTAGATTGTTACAAATGGTATCGATTGGAGAGGGAAACGAAACATCTTCTTTTTTTAATATTCTTCCTTTTATATGTTCTTCCTTTTATAGTCATGATCAACAAAATTCGTTCACTTTGTGTGGCAAGTGTGAAACAACTCATTATATTTCACCTCGAGAAATAAACCTGTTGAACTCATAATATGATATGTGGGACTTGCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACTATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGCGACTACACAAATGATAAAAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCCTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCATATGCTGTTGGAGCCAGCTTCAAGGGTGTCGATTTCTCGAACGCAGTTCTAGATAGGGTAAATTTTGGGAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTCAATTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAACTGTGTGTAAATCCAACTATTAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATATAGTCTGTGTATGTATTGTATTGTATTGTCTAGACAACTTAATGATTTTGGTAAGTAATACATATTCAAAGAGACAACTCCCTCTAACTTCTGTTGAAGAACAATGTGGTGTCACTGTCAAGTTCATGTTTTCCGTAATCTTCTTTCGTTGTTTCCTTAGGAACAAAATCTGATGTTTTTTCTTTTGAGT

Coding sequence (CDS)

ATGTGGGACTTGCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACTATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGCGACTACACAAATGATAAAAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCCTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCATATGCTGTTGGAGCCAGCTTCAAGGGTGTCGATTTCTCGAACGCAGTTCTAGATAGGGTAAATTTTGGGAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTCAATTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAACTGTGTGTAAATCCAACTATTAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGA

Protein sequence

MWDLQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR

Homology

[Close]

BLAST of Carg20340 vs. NCBI nr
Match: XP_022945269.1 (thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA
Sbjct: 81  QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 140

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 141 KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 201 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 237

[Close]

BLAST of Carg20340 vs. NCBI nr
Match: XP_022923067.1 (thylakoid lumenal 17.4 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 173.3 bits (438), Expect = 6.6e-40
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTN+KSQLKGKSLAAALMSEA
Sbjct: 125 QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEA 184

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGADLSEV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 185 KFDGADLSEVVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 244

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 245 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 281

[Close]

BLAST of Carg20340 vs. NCBI nr
Match: XP_022984509.1 (thylakoid lumenal 17.4 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 6.6e-40
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTN+KSQLKGKSLAAALMSEA
Sbjct: 121 QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEA 180

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGADLSEV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 KFDGADLSEVVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 241 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 277

[Close]

BLAST of Carg20340 vs. NCBI nr
Match: XP_022968163.1 (thylakoid lumenal 17.4 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 6.6e-40
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTN+KSQLKGKSLAAALMSEA
Sbjct: 81  QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEA 140

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGADLSEV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 141 KFDGADLSEVVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 201 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 237

[Close]

BLAST of Carg20340 vs. NCBI nr
Match: XP_023541447.1 (thylakoid lumenal 17.4 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.3 bits (438), Expect = 6.6e-40
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTN+KSQLKGKSLAAALMSEA
Sbjct: 81  QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEA 140

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGADLSEV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 141 KFDGADLSEVVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 201 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 237

[Close]

BLAST of Carg20340 vs. TAIR10
Match: AT5G53490.3 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-32
Identity = 135/157 (85.99%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEP+RCE+AFVGNTIGQANGVYDKP+DLRFCDYTND++ LKGK+L+AALM  A
Sbjct: 94  QRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGA 153

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGAD++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 154 KFDGADMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 213

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQK+C N +I+ EGR  LGCR
Sbjct: 214 XXXXXXXXXXXXXYIDLQKICRNESINEEGRLVLGCR 250

[Close]

BLAST of Carg20340 vs. Swiss-Prot
Match: sp|P81760|TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL17 PE=1 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 3.8e-31
Identity = 135/157 (85.99%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEP+RCE+AFVGNTIGQANGVYDKP+DLRFCDYTND++ LKGK+L+AALM  A
Sbjct: 80  QRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGA 139

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGAD++  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 140 KFDGADMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 199

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQK+C N +I+ EGR  LGCR
Sbjct: 200 XXXXXXXXXXXXXYIDLQKICRNESINEEGRLVLGCR 236

[Close]

BLAST of Carg20340 vs. TrEMBL
Match: tr|A0A1S3C2V7|A0A1S3C2V7_CUCME (thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496052 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTN+K+QLKGKSLAAALMS+A
Sbjct: 81  QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKNQLKGKSLAAALMSDA 140

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGADLSEV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 141 KFDGADLSEVVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 201 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 237

[Close]

BLAST of Carg20340 vs. TrEMBL
Match: tr|A0A0A0LC74|A0A0A0LC74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238170 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.2e-39
Identity = 151/157 (96.18%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDLRFCDYTN+K+QLKGKSLAAALMS+A
Sbjct: 81  QRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKNQLKGKSLAAALMSDA 140

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGADLSEV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 141 KFDGADLSEVVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 201 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 237

[Close]

BLAST of Carg20340 vs. TrEMBL
Match: tr|A0A2K1Y7G6|A0A2K1Y7G6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G018100v3 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 1   MWDLQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAAL 60
           M+ LQRLPPLSTEPNRCE+AFVGNTIGQANGVYDKPIDLRFCDYTNDKS LKGKSLAAAL
Sbjct: 10  MFALQRLPPLSTEPNRCEKAFVGNTIGQANGVYDKPIDLRFCDYTNDKSNLKGKSLAAAL 69

Query: 61  MSEAKFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           MS+AKFDGAD++EV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 70  MSDAKFDGADMTEVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 129

Query: 121 XXXXXXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXXXXXYIDLQK+C N +I P+GRAELGCR
Sbjct: 130 XXXXXXXXXXXXXXXXXYIDLQKICRNTSIGPDGRAELGCR 170

[Close]

BLAST of Carg20340 vs. TrEMBL
Match: tr|V4TLV7|V4TLV7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021983mg PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 146/157 (92.99%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDLRFCDYTN+KS LKGKSLAAALMS+A
Sbjct: 82  QRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDA 141

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGAD+SEV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 142 KFDGADMSEVVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 201

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQKLC N T+SP+GRAELGCR
Sbjct: 202 XXXXXXXXXXXXXYIDLQKLCTNTTLSPDGRAELGCR 238

[Close]

BLAST of Carg20340 vs. TrEMBL
Match: tr|A0A2P2LTI2|A0A2P2LTI2_RHIMU (Thylakoid lumenal 17.4 kDa proteinic isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 147/157 (93.63%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 5   QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSQLKGKSLAAALMSEA 64
           QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKS LKGKSLAAALMS+A
Sbjct: 85  QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNDKSHLKGKSLAAALMSDA 144

Query: 65  KFDGADLSEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124
           KFDGAD+SEV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 145 KFDGADMSEVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 204

Query: 125 XXXXXXXXXXXXXYIDLQKLCVNPTISPEGRAELGCR 162
           XXXXXXXXXXXXXYIDLQK+C N TI P+GRA LGCR
Sbjct: 205 XXXXXXXXXXXXXYIDLQKICANSTIGPDGRANLGCR 241

The following BLAST results are available for this feature:

BLAST of Carg20340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945269.1	2.3e-40	100.00	thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucurbita moschata]	[more]
XP_022923067.1	6.6e-40	98.09	thylakoid lumenal 17.4 kDa protein, chloroplastic-like [Cucurbita moschata]	[more]
XP_022984509.1	6.6e-40	98.09	thylakoid lumenal 17.4 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_022968163.1	6.6e-40	98.09	thylakoid lumenal 17.4 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_023541447.1	6.6e-40	98.09	thylakoid lumenal 17.4 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pe...	[more]

BLAST of Carg20340 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53490.3	2.1e-32	85.99	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg20340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P81760\|TL17_ARATH	3.8e-31	85.99	Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Carg20340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2V7\|A0A1S3C2V7_CUCME	2.2e-39	96.82	thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0LC74\|A0A0A0LC74_CUCSA	8.2e-39	96.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238170 PE=4 SV=1	[more]
tr\|A0A2K1Y7G6\|A0A2K1Y7G6_POPTR	1.7e-36	91.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G018100v3 PE=...	[more]
tr\|V4TLV7\|V4TLV7_9ROSI	2.2e-36	92.99	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021983mg PE=4 ...	[more]
tr\|A0A2P2LTI2\|A0A2P2LTI2_RHIMU	2.2e-36	93.63	Thylakoid lumenal 17.4 kDa proteinic isoform X1 OS=Rhizophora mucronata OX=61149...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001646	5peptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20340-RA	Carg20340-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001646	Pentapeptide repeat	PFAM	PF13599	Pentapeptide_4	coord: 84..142 e-value: 3.9E-9 score: 36.4
None	No IPR available	GENE3D	G3DSA:2.160.20.100		coord: 37..161 e-value: 7.1E-22 score: 79.1
None	No IPR available	PANTHER	PTHR14136:SF20	THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC	coord: 5..161
None	No IPR available	PANTHER	PTHR14136	UNCHARACTERIZED	coord: 5..161
None	No IPR available	SUPERFAMILY	SSF141571	Pentapeptide repeat-like	coord: 39..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20340	Cla004271	Watermelon (97103) v1	carwmB0535
Carg20340	Csa3G238170	Cucumber (Chinese Long) v2	carcuB0569
Carg20340	MELO3C019377	Melon (DHL92) v3.5.1	carmeB0544
Carg20340	ClCG05G009090	Watermelon (Charleston Gray)	carwcgB0524
Carg20340	CSPI03G19640	Wild cucumber (PI 183967)	carcpiB0575
Carg20340	Cucsa.032310	Cucumber (Gy14) v1	carcgyB0614
Carg20340	CmaCh18G013180	Cucurbita maxima (Rimu)	carcmaB0754
Carg20340	CmaCh16G000360	Cucurbita maxima (Rimu)	carcmaB0753
Carg20340	CmoCh18G013480	Cucurbita moschata (Rifu)	carcmoB0732
Carg20340	CmoCh16G000420	Cucurbita moschata (Rifu)	carcmoB0731
Carg20340	Lsi05G001160	Bottle gourd (USVL1VR-Ls)	carlsiB488
Carg20340	Cp4.1LG09g00290	Cucurbita pepo (Zucchini)	carcpeB0759
Carg20340	Cp4.1LG14g07150	Cucurbita pepo (Zucchini)	carcpeB0762
Carg20340	CsGy3G019570	Cucumber (Gy14) v2	carcgybB0545
Carg20340	MELO3C019377.2	Melon (DHL92) v3.6.1	carmedB0549
Carg20340	CsaV3_3G019700	Cucumber (Chinese Long) v3	carcucB0576
Carg20340	Cla97C05G091400	Watermelon (97103) v2	carwmbB0565
Carg20340	Bhi01G001130	Wax gourd	carwgoB0648

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20340	Carg15055	Silver-seed gourd	carcarB504

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20340	Silver-seed gourd	carcarB490
Carg20340	Silver-seed gourd	carcarB503
Carg20340	Cucumber (Gy14) v2	carcgybB0543
Carg20340	Cucumber (Gy14) v2	carcgybB0546
Carg20340	Cucumber (Gy14) v1	carcgyB0615
Carg20340	Cucumber (Gy14) v1	carcgyB0617
Carg20340	Cucurbita maxima (Rimu)	carcmaB0752
Carg20340	Cucurbita maxima (Rimu)	carcmaB0751
Carg20340	Cucurbita maxima (Rimu)	carcmaB0756
Carg20340	Cucurbita moschata (Rifu)	carcmoB0729
Carg20340	Cucurbita moschata (Rifu)	carcmoB0730
Carg20340	Cucurbita moschata (Rifu)	carcmoB0734
Carg20340	Cucurbita pepo (Zucchini)	carcpeB0760
Carg20340	Cucurbita pepo (Zucchini)	carcpeB0761
Carg20340	Cucurbita pepo (Zucchini)	carcpeB0765
Carg20340	Wild cucumber (PI 183967)	carcpiB0573
Carg20340	Wild cucumber (PI 183967)	carcpiB0576
Carg20340	Cucumber (Chinese Long) v2	carcuB0567
Carg20340	Cucumber (Chinese Long) v2	carcuB0570
Carg20340	Cucumber (Chinese Long) v3	carcucB0574
Carg20340	Cucumber (Chinese Long) v3	carcucB0577
Carg20340	Bottle gourd (USVL1VR-Ls)	carlsiB487
Carg20340	Bottle gourd (USVL1VR-Ls)	carlsiB490
Carg20340	Melon (DHL92) v3.5.1	carmeB0542
Carg20340	Melon (DHL92) v3.5.1	carmeB0546
Carg20340	Melon (DHL92) v3.6.1	carmedB0547
Carg20340	Melon (DHL92) v3.6.1	carmedB0552
Carg20340	Watermelon (Charleston Gray)	carwcgB0522
Carg20340	Watermelon (Charleston Gray)	carwcgB0525
Carg20340	Watermelon (97103) v1	carwmB0536
Carg20340	Watermelon (97103) v1	carwmB0537
Carg20340	Watermelon (97103) v2	carwmbB0566
Carg20340	Watermelon (97103) v2	carwmbB0563
Carg20340	Wax gourd	carwgoB0647
Carg20340	Wax gourd	carwgoB0649