CmaCh16G000360 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G000360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Thylakoid lumenal 17.4 kDa protein
Location	Cma_Chr16 : 162477 .. 164592 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATTATCCAAATTTATATCCCATGCTTGTAATAAATCTTAACTATAATGGAAACGGATATTCTAAGTGAAAATCCTACGTGTACTGCCACGTTGTCAAGATCAGATCCCCAACATATCAGAACGGATAAGTCGGCAGAGCGAGCGGGAGGGAATTCATCTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAATTATAGCCCCATTTTCCCATTCGCTCGCCCGTATCAGTTGCTCAGGTTACCATTTCTTCTATCTGCTTCGAGTTTTTTCTGTCTCAACTTTCACGTACTTTGTCTTTGAACACTTGTTTAATGCGTTTGTTTACTCGAATCATTGCTACACTGAGTACCCTTTTGTGGGTAAATTGCGTCAGAATCTGGGGAGAACTGTTTTCTTCTTCTCGGGTCTTATGTTGTTAGGCTTAGAATCAAGATGGTGGCTGTGCAAATTGTTTTCTCCTGAAATGTGCTTAGCTGATAGCAATTTGAAATCTTCACCAAGTAGAGGGAAAGGAAAGGAATATCATGTGAACTGGACTTTAACTGAATGTGTATCCAAGCATTATGAGTTATATTTTAATGGAGCCTTTTCTGGCATACCATTTTATTAACTGATGAAAAAAGCGTTCCTGTGCTGCAATTACAGCTAATAGGGATGGGGCAGAACCAAGAGAGAGCTTGTCACCCTGCAACCATATTGGTTCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGGTTAATAACTTTTGGGTTTAGTACCGATTTAACCATTGACATGACTTCTTAGATATTCAAACTTACCATGATGTTTGGGTACATAAGCCAAAAACTTATCATGAAGTTAAATTTAGGCTTAAGATGTTAAACCTAGTTACTCTCGAGGGGATTGAATGTGTAATTTGGATTGGAAGCCCTGCTTTCTACTTCACCAGTCTTTCTATTAGCATGCAGTTCATCGTCCTTCGGATACTCTATTTTTTTTTATGTTCTTCCTTTTCTAGTCATGATTGATAAGCATCGTCCACTTTCTGTGGCAAACATCAAGCAACTTATAATATTTGAGTTTGAAGAAGAAAGCTGTTGAACTCATAGTATCTGGGACTTGCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTAAAACTCTCTCTATCTCACCCCCACTCGAATAGGGAGGTGGGTTGGTAACAAATCTTCATGTTCTAGCACGAATATGGCTTTAAGAATGACTTGGTTTCCAAAGAAGCGCATCTAGTGCTTCCAATACTTGATATGGTACAGAGACAAAATCCACGAGTTCAACACATGCTAGTTTATAGAATAAATCCCAGCCTCCTCATAATATGGCTTTAAGTATATCATTACATATTGCAGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGACGATGCTCAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATACAGTTTTTATAGTTTCACCATATGTATTGTATTGTATAAACAACTTGATGAGTTTGATAAGTAATACATCTTCAAAGAGAGAACCCCCTCTCCCATTGAAGCATTAATGCTGTTTTCTATTTTCATTTCATTTTTGCACTCTGAACCCATCCACCAATAACTTTTTGTAGGGAGAAAATCTGATGTTTTTGCTTTCGTTGTTATTAG

mRNA sequence

TTAATTATCCAAATTTATATCCCATGCTTGTAATAAATCTTAACTATAATGGAAACGGATATTCTAAGTGAAAATCCTACGTGTACTGCCACGTTGTCAAGATCAGATCCCCAACATATCAGAACGGATAAGTCGGCAGAGCGAGCGGGAGGGAATTCATCTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAATTATAGCCCCATTTTCCCATTCGCTCGCCCGTATCAGTTGCTCAGCTAATAGGGATGGGGCAGAACCAAGAGAGAGCTTGTCACCCTGCAACCATATTGGTTCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGACGATGCTCAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATACAGTTTTTATAGTTTCACCATATGTATTGTATTGTATAAACAACTTGATGAGTTTGATAAGTAATACATCTTCAAAGAGAGAACCCCCTCTCCCATTGAAGCATTAATGCTGTTTTCTATTTTCATTTCATTTTTGCACTCTGAACCCATCCACCAATAACTTTTTGTAGGGAGAAAATCTGATGTTTTTGCTTTCGTTGTTATTAG

Coding sequence (CDS)

ATGGAAACGGATATTCTAAGTGAAAATCCTACGTGTACTGCCACGTTGTCAAGATCAGATCCCCAACATATCAGAACGGATAAGTCGGCAGAGCGAGCGGGAGGGAATTCATCTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAATTATAGCCCCATTTTCCCATTCGCTCGCCCGTATCAGTTGCTCAGCTAATAGGGATGGGGCAGAACCAAGAGAGAGCTTGTCACCCTGCAACCATATTGGTTCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGACGATGCTCAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGA

Protein sequence

METDILSENPTCTATLSRSDPQHIRTDKSAERAGGNSSFQMATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCSANRDGAEPRESLSPCNHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR

Homology

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BLAST of CmaCh16G000360 vs. Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL17 PE=1 SV=2)

HSP 1 Score: 303.5 bits (776), Expect = 2.3e-81
Identity = 155/240 (64.58%), Postives = 189/240 (78.75%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCSA--NRDGAEP-RESLSPCNHI 100
           MA+L + F++N  S  FFS      +     SL  + CSA  NR+  E  ++SL P   +
Sbjct: 1   MASLPVQFTRNQISSPFFSVN----LRREPRSLVTVHCSAGENRENGEGVKKSLFPLKEL 60

Query: 101 GSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRF 160
           GS+AC  L    LT  SP  AANQRLPPLSTEP+RCE+AFVGNTIGQANGVYDKP+DLRF
Sbjct: 61  GSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRF 120

Query: 161 CDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNF 220
           CDYTN+++ LKGK+L+AALM  AKFDGAD++EVVMSKAYAV ASFKGV+F+NAV+DRVNF
Sbjct: 121 CDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNF 180

Query: 221 GKANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           GK+NL+GA+F+NTVLSGSTF++A L+D VFEDTIIGYIDLQK+C N +I+ EGR  LGCR
Sbjct: 181 GKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRNESINEEGRLVLGCR 236

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BLAST of CmaCh16G000360 vs. Swiss-Prot
Match: TL203_ARATH (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-10
Identity = 47/157 (29.94%), Postives = 72/157 (45.86%), Query Frame = 1


Query: 125 PLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDG 184
           P   E NR E    G   G  +       DL    ++NE    +  +  +A M E+ F G
Sbjct: 87  PAMAELNRFEADTRGE-FGIGSAAQYGSADLSKTVHSNEN--FRRANFTSADMRESDFSG 146

Query: 185 ADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLQD 244
           +  +   + KA A  A+F G D S+ ++DR+   +ANL  A+   +VL+ S    A+++ 
Sbjct: 147 STFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEG 206

Query: 245 AVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGC 277
           A F D +I  +  Q LC      NP    + R  LGC
Sbjct: 207 ADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

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BLAST of CmaCh16G000360 vs. Swiss-Prot
Match: RFR32_CYAA5 (Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-07
Identity = 35/119 (29.41%), Postives = 57/119 (47.90%), Query Frame = 1


Query: 169 GKSLAAAL-----MSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQ 228
           GKSL  A      ++++ F  ADL   V + +  +GA   G D +N +    +F  A+L 
Sbjct: 61  GKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLT 120

Query: 229 GALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGCR 278
            A+    ++  + FDDA++  A F   ++   ++ KLC     VNP      R  LGC+
Sbjct: 121 NAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLGCQ 179

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BLAST of CmaCh16G000360 vs. TrEMBL
Match: A0A0A0LC74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238170 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 9.1e-117
Identity = 211/237 (89.03%), Postives = 220/237 (92.83%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCSANRDGAEPRESLSPCNHIGSV 100
           MA LS P S NGFSR FFS +   I+ PF HSL RI+CSA RDGAEPRE+LSPC HI +V
Sbjct: 1   MAALSTPLSHNGFSRSFFSTRRSKIVYPFPHSLPRITCSATRDGAEPRENLSPCKHISTV 60

Query: 101 ACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY 160
           ACGLLAVWALTNTSP  AANQRLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDLRFCDY
Sbjct: 61  ACGLLAVWALTNTSPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDY 120

Query: 161 TNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA 220
           TNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA
Sbjct: 121 TNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA 180

Query: 221 NLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           NLQGALFKNTVLSGSTFDDAQL+DAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 181 NLQGALFKNTVLSGSTFDDAQLEDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 237

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BLAST of CmaCh16G000360 vs. TrEMBL
Match: V4TLV7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021983mg PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.2e-95
Identity = 180/238 (75.63%), Postives = 201/238 (84.45%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSA-KHPPIIAPFSHSLARISCSANRDGAEPRESLSPCNHIGS 100
           MAT+S+P S N  S +  S  +H       SHS   ++CSA R+ +EP+ES S    +  
Sbjct: 1   MATISVPLSHNTSSLQHLSTIRHRFHFPRSSHSPLTVACSARRNSSEPKESFSHLKELKG 60

Query: 101 VACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCD 160
           VACG LA WA+T  SP  AANQRLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDLRFCD
Sbjct: 61  VACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCD 120

Query: 161 YTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK 220
           YTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK
Sbjct: 121 YTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK 180

Query: 221 ANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           A+L+GA+FKNTVLSGSTF++AQLQDAVFEDTIIGYIDLQKLC N T+SP+GRAELGCR
Sbjct: 181 AHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQKLCTNTTLSPDGRAELGCR 238

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BLAST of CmaCh16G000360 vs. TrEMBL
Match: W9QE42_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020914 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.6e-95
Identity = 180/239 (75.31%), Postives = 206/239 (86.19%), Query Frame = 1


Query: 42  ATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCS-ANRDGAEPRES--LSPCNHIG 101
           AT SIP +QN F  RF  +K   ++   S+S  R+ CS  +RDG E +E+  +SP   + 
Sbjct: 3   ATSSIPLNQNVFRLRFKPSKRHALLPVESYSSPRVFCSEVSRDGPELKENNNMSPTKQLK 62

Query: 102 SVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFC 161
           +VACG+LAVWA+T  SP  AA+QRLPPLSTEPNRCERAFVGNTIGQANGVYDKP+DLRFC
Sbjct: 63  NVACGVLAVWAVTTASPVVAASQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRFC 122

Query: 162 DYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFG 221
           DY+NEKS LKGKSLAAALMS+AKFDGAD++EVVMSKAYAVGASFKGVDFSNAV+DRVNFG
Sbjct: 123 DYSNEKSNLKGKSLAAALMSDAKFDGADMTEVVMSKAYAVGASFKGVDFSNAVIDRVNFG 182

Query: 222 KANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           KA+LQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGY+DLQKLC N TISP+GRAELGCR
Sbjct: 183 KADLQGALFKNTVLSGSTFDDAKLEDAVFEDTIIGYVDLQKLCTNKTISPDGRAELGCR 241

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BLAST of CmaCh16G000360 vs. TrEMBL
Match: B9I1Y5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02510g PE=4 SV=2)

HSP 1 Score: 345.5 bits (885), Expect = 6.0e-92
Identity = 174/237 (73.42%), Postives = 197/237 (83.12%), Query Frame = 1


Query: 42  ATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCSANRDGAEPRESLSPCN-HIGSV 101
           AT S+P SQN F    FS+       P  HS  +I CS + DG++ RESL      I  V
Sbjct: 4   ATFSLPLSQNKFPLYHFSSARRRFPIPDLHSPLKICCSGSGDGSKSRESLFQFKKEINYV 63

Query: 102 ACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY 161
           ACG+LA WA+T  SP  AA QRLPPLSTEPNRCE+AFVGNTIGQANGVYDKPIDLRFCDY
Sbjct: 64  ACGILAAWAVTAASPVIAAGQRLPPLSTEPNRCEKAFVGNTIGQANGVYDKPIDLRFCDY 123

Query: 162 TNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA 221
           TN+KS LKGKSLAAALMS+AKFDGAD++EVVMSKAYAVGASF+GVDFSNAVLDRVNFGKA
Sbjct: 124 TNDKSNLKGKSLAAALMSDAKFDGADMTEVVMSKAYAVGASFRGVDFSNAVLDRVNFGKA 183

Query: 222 NLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           +L+GA+FKNTVLSGSTFD+AQL+DA+FEDTIIGYIDLQK+C N +I P+GRAELGCR
Sbjct: 184 DLKGAVFKNTVLSGSTFDEAQLEDAIFEDTIIGYIDLQKICRNTSIGPDGRAELGCR 240

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BLAST of CmaCh16G000360 vs. TrEMBL
Match: E0CV77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01540 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.5e-90
Identity = 178/237 (75.11%), Postives = 196/237 (82.70%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCSANRDGAEPRESLSPCNHIGSV 100
           MATLSIP S    S +      P + +PF     RISCSA+ D  E + S S    + +V
Sbjct: 1   MATLSIPLSLQHSSPKRHRFSVPELHSPF-----RISCSASWDSPELKASSSQFKELKNV 60

Query: 101 ACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY 160
           A G+LAV A+T  SP  AA+QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY
Sbjct: 61  AFGILAVCAVTAASPVIAASQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY 120

Query: 161 TNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA 220
           TNEKS LKGKSLAAALMSEAKFDGAD+SEVVMSKAYAVGASFKGVDF+NAVLDRVNFGKA
Sbjct: 121 TNEKSNLKGKSLAAALMSEAKFDGADMSEVVMSKAYAVGASFKGVDFTNAVLDRVNFGKA 180

Query: 221 NLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           NLQGA+FKNTVLSGSTFD AQL+DAVFEDTIIGYIDLQK+C N +I+ +GRAELGCR
Sbjct: 181 NLQGAVFKNTVLSGSTFDQAQLEDAVFEDTIIGYIDLQKICTNTSINADGRAELGCR 232

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BLAST of CmaCh16G000360 vs. TAIR10
Match: AT5G53490.3 (AT5G53490.3 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 298.1 bits (762), Expect = 5.5e-81
Identity = 155/254 (61.02%), Postives = 189/254 (74.41%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCSA----------------NRDG 100
           MA+L + F++N  S  FFS      +     SL  + CSA                NR+ 
Sbjct: 1   MASLPVQFTRNQISSPFFSVN----LRREPRSLVTVHCSAKVVYVILICIMFSAGENREN 60

Query: 101 AEP-RESLSPCNHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIG 160
            E  ++SL P   +GS+AC  L    LT  SP  AANQRLPPLSTEP+RCE+AFVGNTIG
Sbjct: 61  GEGVKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAFVGNTIG 120

Query: 161 QANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFK 220
           QANGVYDKP+DLRFCDYTN+++ LKGK+L+AALM  AKFDGAD++EVVMSKAYAV ASFK
Sbjct: 121 QANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFK 180

Query: 221 GVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVN 278
           GV+F+NAV+DRVNFGK+NL+GA+F+NTVLSGSTF++A L+D VFEDTIIGYIDLQK+C N
Sbjct: 181 GVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRN 240

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BLAST of CmaCh16G000360 vs. TAIR10
Match: AT1G12250.1 (AT1G12250.1 Pentapeptide repeat-containing protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-11
Identity = 47/157 (29.94%), Postives = 72/157 (45.86%), Query Frame = 1


Query: 125 PLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDG 184
           P   E NR E    G   G  +       DL    ++NE    +  +  +A M E+ F G
Sbjct: 87  PAMAELNRFEADTRGE-FGIGSAAQYGSADLSKTVHSNEN--FRRANFTSADMRESDFSG 146

Query: 185 ADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLQD 244
           +  +   + KA A  A+F G D S+ ++DR+   +ANL  A+   +VL+ S    A+++ 
Sbjct: 147 STFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEG 206

Query: 245 AVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGC 277
           A F D +I  +  Q LC      NP    + R  LGC
Sbjct: 207 ADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

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BLAST of CmaCh16G000360 vs. NCBI nr
Match: gi|659111944|ref|XP_008455988.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 438.0 bits (1125), Expect = 1.3e-119
Identity = 217/237 (91.56%), Postives = 224/237 (94.51%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCSANRDGAEPRESLSPCNHIGSV 100
           MATLSIP SQNGFSR FFS K P I+ PF HSL RI+CSA RDGA+PRE+LSPC HI +V
Sbjct: 1   MATLSIPPSQNGFSRSFFSTKRPQIVYPFPHSLPRITCSATRDGAKPRENLSPCKHISTV 60

Query: 101 ACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY 160
           ACGLLAVWALTNTSP  AANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY
Sbjct: 61  ACGLLAVWALTNTSPVIAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY 120

Query: 161 TNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA 220
           TNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA
Sbjct: 121 TNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA 180

Query: 221 NLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           NLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 181 NLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 237

[Close]

BLAST of CmaCh16G000360 vs. NCBI nr
Match: gi|778680423|ref|XP_011651313.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 1.3e-116
Identity = 211/237 (89.03%), Postives = 220/237 (92.83%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCSANRDGAEPRESLSPCNHIGSV 100
           MA LS P S NGFSR FFS +   I+ PF HSL RI+CSA RDGAEPRE+LSPC HI +V
Sbjct: 1   MAALSTPLSHNGFSRSFFSTRRSKIVYPFPHSLPRITCSATRDGAEPRENLSPCKHISTV 60

Query: 101 ACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDY 160
           ACGLLAVWALTNTSP  AANQRLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDLRFCDY
Sbjct: 61  ACGLLAVWALTNTSPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDY 120

Query: 161 TNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA 220
           TNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA
Sbjct: 121 TNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKA 180

Query: 221 NLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           NLQGALFKNTVLSGSTFDDAQL+DAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR
Sbjct: 181 NLQGALFKNTVLSGSTFDDAQLEDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 237

[Close]

BLAST of CmaCh16G000360 vs. NCBI nr
Match: gi|567897328|ref|XP_006441152.1| (hypothetical protein CICLE_v10021983mg [Citrus clementina])

HSP 1 Score: 357.8 bits (917), Expect = 1.7e-95
Identity = 180/238 (75.63%), Postives = 201/238 (84.45%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSA-KHPPIIAPFSHSLARISCSANRDGAEPRESLSPCNHIGS 100
           MAT+S+P S N  S +  S  +H       SHS   ++CSA R+ +EP+ES S    +  
Sbjct: 1   MATISVPLSHNTSSLQHLSTIRHRFHFPRSSHSPLTVACSARRNSSEPKESFSHLKELKG 60

Query: 101 VACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCD 160
           VACG LA WA+T  SP  AANQRLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDLRFCD
Sbjct: 61  VACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCD 120

Query: 161 YTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK 220
           YTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK
Sbjct: 121 YTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK 180

Query: 221 ANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           A+L+GA+FKNTVLSGSTF++AQLQDAVFEDTIIGYIDLQKLC N T+SP+GRAELGCR
Sbjct: 181 AHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQKLCTNTTLSPDGRAELGCR 238

[Close]

BLAST of CmaCh16G000360 vs. NCBI nr
Match: gi|703066942|ref|XP_010087838.1| (hypothetical protein L484_020914 [Morus notabilis])

HSP 1 Score: 356.7 bits (914), Expect = 3.7e-95
Identity = 180/239 (75.31%), Postives = 206/239 (86.19%), Query Frame = 1


Query: 42  ATLSIPFSQNGFSRRFFSAKHPPIIAPFSHSLARISCS-ANRDGAEPRES--LSPCNHIG 101
           AT SIP +QN F  RF  +K   ++   S+S  R+ CS  +RDG E +E+  +SP   + 
Sbjct: 3   ATSSIPLNQNVFRLRFKPSKRHALLPVESYSSPRVFCSEVSRDGPELKENNNMSPTKQLK 62

Query: 102 SVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFC 161
           +VACG+LAVWA+T  SP  AA+QRLPPLSTEPNRCERAFVGNTIGQANGVYDKP+DLRFC
Sbjct: 63  NVACGVLAVWAVTTASPVVAASQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRFC 122

Query: 162 DYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFG 221
           DY+NEKS LKGKSLAAALMS+AKFDGAD++EVVMSKAYAVGASFKGVDFSNAV+DRVNFG
Sbjct: 123 DYSNEKSNLKGKSLAAALMSDAKFDGADMTEVVMSKAYAVGASFKGVDFSNAVIDRVNFG 182

Query: 222 KANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           KA+LQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGY+DLQKLC N TISP+GRAELGCR
Sbjct: 183 KADLQGALFKNTVLSGSTFDDAKLEDAVFEDTIIGYVDLQKLCTNKTISPDGRAELGCR 241

[Close]

BLAST of CmaCh16G000360 vs. NCBI nr
Match: gi|568877960|ref|XP_006491985.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Citrus sinensis])

HSP 1 Score: 355.1 bits (910), Expect = 1.1e-94
Identity = 179/238 (75.21%), Postives = 200/238 (84.03%), Query Frame = 1


Query: 41  MATLSIPFSQNGFSRRFFSA-KHPPIIAPFSHSLARISCSANRDGAEPRESLSPCNHIGS 100
           MAT+S+P S N  SR+  S  +H       SHS   I+CSA R+ +E +ES S    +  
Sbjct: 1   MATISVPLSHNTSSRQHLSTIRHRFHFPRSSHSPLTIACSARRNSSESKESFSHLKELKG 60

Query: 101 VACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCD 160
           VACG LA WA+T  SP  AANQRLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDLRFCD
Sbjct: 61  VACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCD 120

Query: 161 YTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK 220
           YTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK
Sbjct: 121 YTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGK 180

Query: 221 ANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 278
           A+L+GA+FKNTVLSGSTF++AQLQDAVFEDTIIGY+DLQKLC N T+SP+GR ELGCR
Sbjct: 181 AHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYVDLQKLCTNTTLSPDGRDELGCR 238

The following BLAST results are available for this feature:

BLAST of CmaCh16G000360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TL17_ARATH	2.3e-81	64.58	Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL1...	[more]
TL203_ARATH	2.8e-10	29.94	Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20....	[more]
RFR32_CYAA5	6.5e-07	29.41	Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32...	[more]

BLAST of CmaCh16G000360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC74_CUCSA	9.1e-117	89.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238170 PE=4 SV=1	[more]
V4TLV7_9ROSI	1.2e-95	75.63	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021983mg PE=4 SV=1	[more]
W9QE42_9ROSA	2.6e-95	75.31	Uncharacterized protein OS=Morus notabilis GN=L484_020914 PE=4 SV=1	[more]
B9I1Y5_POPTR	6.0e-92	73.42	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02510g PE=4 SV=2	[more]
E0CV77_VITVI	2.5e-90	75.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01540 PE=4 SV=...	[more]

BLAST of CmaCh16G000360 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53490.3	5.5e-81	61.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12250.1	1.6e-11	29.94	Pentapeptide repeat-containing protein	[more]

BLAST of CmaCh16G000360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111944\|ref\|XP_008455988.1\|	1.3e-119	91.56	PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis melo]	[more]
gi\|778680423\|ref\|XP_011651313.1\|	1.3e-116	89.03	PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis sativus]	[more]
gi\|567897328\|ref\|XP_006441152.1\|	1.7e-95	75.63	hypothetical protein CICLE_v10021983mg [Citrus clementina]	[more]
gi\|703066942\|ref\|XP_010087838.1\|	3.7e-95	75.31	hypothetical protein L484_020914 [Morus notabilis]	[more]
gi\|568877960\|ref\|XP_006491985.1\|	1.1e-94	75.21	PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001646	5peptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G000360.1	CmaCh16G000360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001646	Pentapeptide repeat	PFAM	PF13599	Pentapeptide_4	coord: 200..258 score: 1.
None	No IPR available	PANTHER	PTHR14136	UNCHARACTERIZED	coord: 41..277 score: 1.3E
None	No IPR available	PANTHER	PTHR14136:SF11	THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC	coord: 41..277 score: 1.3E
None	No IPR available	unknown	SSF141571	Pentapeptide repeat-like	coord: 155..259 score: 4.58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G000360	Cucsa.032310	Cucumber (Gy14) v1	cgycmaB0008
CmaCh16G000360	Cla004271	Watermelon (97103) v1	cmawmB316
CmaCh16G000360	Csa3G238170	Cucumber (Chinese Long) v2	cmacuB321
CmaCh16G000360	MELO3C019377	Melon (DHL92) v3.5.1	cmameB296
CmaCh16G000360	ClCG05G009090	Watermelon (Charleston Gray)	cmawcgB296
CmaCh16G000360	CSPI03G19640	Wild cucumber (PI 183967)	cmacpiB327
CmaCh16G000360	CmoCh18G013480	Cucurbita moschata (Rifu)	cmacmoB326
CmaCh16G000360	CmoCh16G000420	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G000360	Lsi05G001160	Bottle gourd (USVL1VR-Ls)	cmalsiB318
CmaCh16G000360	Cp4.1LG09g00290	Cucurbita pepo (Zucchini)	cmacpeB340
CmaCh16G000360	Cp4.1LG14g07150	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G000360	MELO3C019377.2	Melon (DHL92) v3.6.1	cmamedB347
CmaCh16G000360	CsaV3_3G019700	Cucumber (Chinese Long) v3	cmacucB0374
CmaCh16G000360	Cla97C05G091400	Watermelon (97103) v2	cmawmbB346
CmaCh16G000360	Bhi01G001130	Wax gourd	cmawgoB0439
CmaCh16G000360	CsGy3G019570	Cucumber (Gy14) v2	cgybcmaB333
CmaCh16G000360	Carg15055	Silver-seed gourd	carcmaB1366
CmaCh16G000360	Carg20340	Silver-seed gourd	carcmaB0753

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G000360	CmaCh18G013180	Cucurbita maxima (Rimu)	cmacmaB337

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G000360	Cucurbita pepo (Zucchini)	cmacpeB339
CmaCh16G000360	Cucurbita pepo (Zucchini)	cmacpeB343
CmaCh16G000360	Cucurbita pepo (Zucchini)	cmacpeB358
CmaCh16G000360	Bottle gourd (USVL1VR-Ls)	cmalsiB298
CmaCh16G000360	Cucumber (Gy14) v2	cgybcmaB618
CmaCh16G000360	Melon (DHL92) v3.6.1	cmamedB326
CmaCh16G000360	Silver-seed gourd	carcmaB0713
CmaCh16G000360	Silver-seed gourd	carcmaB0752
CmaCh16G000360	Cucumber (Chinese Long) v3	cmacucB0402
CmaCh16G000360	Watermelon (97103) v2	cmawmbB324
CmaCh16G000360	Wax gourd	cmawgoB0428
CmaCh16G000360	Cucurbita maxima (Rimu)	cmacmaB243
CmaCh16G000360	Cucurbita maxima (Rimu)	cmacmaB300
CmaCh16G000360	Cucurbita maxima (Rimu)	cmacmaB338
CmaCh16G000360	Cucurbita maxima (Rimu)	cmacmaB346
CmaCh16G000360	Cucumber (Gy14) v1	cgycmaB0600
CmaCh16G000360	Cucurbita moschata (Rifu)	cmacmoB319
CmaCh16G000360	Cucurbita moschata (Rifu)	cmacmoB327
CmaCh16G000360	Cucurbita moschata (Rifu)	cmacmoB333
CmaCh16G000360	Wild cucumber (PI 183967)	cmacpiB346
CmaCh16G000360	Cucumber (Chinese Long) v2	cmacuB342
CmaCh16G000360	Melon (DHL92) v3.5.1	cmameB283
CmaCh16G000360	Watermelon (Charleston Gray)	cmawcgB289
CmaCh16G000360	Watermelon (Charleston Gray)	cmawcgB295
CmaCh16G000360	Watermelon (97103) v1	cmawmB318