Cp4.1LG14g07150 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g07150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionThylakoid lumenal 17.4 kDa protein
LocationCp4.1LG14 : 162127 .. 164170 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGATCCCCAACATATCAGAACGGATAAGTCGGCAGAGCGAGCGAGCGAGCGAGCGGGAGGGAATTCATTTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTATAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGGTTACCATTTCTTCTATCTGCTTCGAGTTTTTTCTGTCTCAACTTTTACGTACTTTGTCTTTGAACACTTGTTTAATGCGTTTATTTACTCGAATCATTGCTAAGTACCCTTTTGTGGGTAAATTGCGTCAGAATCTGGGGAGAACTGCTTTCATCTTCTCGGATCTTATGTTGTTAGGCTTAGAATCAAGATGGTGGCTGTGCAAATTGGCTAATGCTTTAGTCCCGTTTTTTGCATACCCTGAAATGTGCTTAGCTGAATGCGATTTGAAATCTTCACCACGTAGAGGGAAAGGAAAGGAATATCGTGTGAACTGGACTTTAACTGAATGTGTATCCAAGCATTATGAGTTATATTTTAATGGAGCCTTTTCTGGCATACCATTTTATTAACTGATGAAAAAAGCGTTCGTGTCCTGCAATTACAGCTAATAGGAATGGGGCAGAACCAAGAGAGAGCTTGTCACCCTCCAAGCATATTGGCTCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGGTTAATAGCTTTTGGGTTTAGTACTGATTTAACCATTGACATGACTTCTTAGATATTCAAACTTACCATGATGTTTGGGTACATAAGCCAAAAACTTATCATGAAGTTAAATTTAGGCTTAAGATGTTAAACCTAGTTACTCTCCAGGGGATTGAATGTGTAATTTGGATTGGAAGCCCTGCTTTCTACTTCACCGGTCTTTCTATTAGCATGCAGTTCATCGTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTCTTCCTTTTCTAGTCATGATTGATAAGCATCGTCCACTTTCTGTGGCAAACATCAAACAACTTATAATATTTGAGTTTGAAGAAGAAAGCTGTTGAACTCATAATATGTGGGACTTGCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTAAAACTCTCTCTATCTCACCCCCACTCGAATAGGGAGGTGGGTTGGTAACAAATCTTCATGTTCTAGCACGAATATGGCTTTAAGAATGACTTAGTTTCCAAAGAAGCGCATCTAGTGCTTCCAATACTTGATATGGTACATAGACAAAATCCACGAGTTCAACAAATGCTAGCTTACAGAATAAATCCCAGCCTCCTAATAATATGGCTTTAAGTATATCATTACATATTGCAGGTGTTGATTTCTCGAATGCAGTTCTAGACAGAGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATACAGTTTTTATAGTTTCACCATATGTATTGTATTGTATAAACAACTTGATGAGTTTGGTAAGTAATACATCTTCAAAGAGAGAACCCCCTCTCCCATTGAAGCATTATTGCTGTTTTCTACTTTCATTTCATTTTTGCACTCTGAACCCATCCACCATTAACCTTTTGTAGGGAGAAAATCTGATGTTTTTGCTT

mRNA sequence

CAGATCCCCAACATATCAGAACGGATAAGTCGGCAGAGCGAGCGAGCGAGCGAGCGGGAGGGAATTCATTTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTATAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGGCTTAGAATCAAGATGGTGGCTGTGCAAATTGGCTAATGCTTTAGTCCCGTTTTTTGCATACCCTGAAATGTGCTTAGCTGAATGCGATTTGAAATCTTCACCACGTAGAGGGAAAGGAAAGGAATATCGTGTGAACTGGACTTTAACTGAATCTAATAGGAATGGGGCAGAACCAAGAGAGAGCTTGTCACCCTCCAAGCATATTGGCTCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCGAATGCAGTTCTAGACAGAGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATACAGTTTTTATAGTTTCACCATATGTATTGTATTGTATAAACAACTTGATGAGTTTGGTAAGTAATACATCTTCAAAGAGAGAACCCCCTCTCCCATTGAAGCATTATTGCTGTTTTCTACTTTCATTTCATTTTTGCACTCTGAACCCATCCACCATTAACCTTTTGTAGGGAGAAAATCTGATGTTTTTGCTT

Coding sequence (CDS)

ATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTATAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGGCTTAGAATCAAGATGGTGGCTGTGCAAATTGGCTAATGCTTTAGTCCCGTTTTTTGCATACCCTGAAATGTGCTTAGCTGAATGCGATTTGAAATCTTCACCACGTAGAGGGAAAGGAAAGGAATATCGTGTGAACTGGACTTTAACTGAATCTAATAGGAATGGGGCAGAACCAAGAGAGAGCTTGTCACCCTCCAAGCATATTGGCTCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTGTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCAAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCGAATGCAGTTCTAGACAGAGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGA

Protein sequence

MATLSIPFSQNGFSRRFFSAKHPPVIAPFSHSLAPISCSGLESRWWLCKLANALVPFFAYPEMCLAECDLKSSPRRGKGKEYRVNWTLTESNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR
Homology
[Close]
BLAST of Cp4.1LG14g07150 vs. Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL17 PE=1 SV=2)

HSP 1 Score: 295.0 bits (754), Expect = 8.6e-79
Identity = 143/205 (69.76%), Postives = 173/205 (84.39%), Query Frame = 1 

Query: 84  VNWTLTESNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNR 143
           V+ +  E+  NG   ++SL P K +GS+AC  L    LT  SP  AANQRLPPLSTEP+R
Sbjct: 32  VHCSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDR 91

Query: 144 CERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVM 203
           CE+AFVGNTIGQANGVYDKP+DLRFCDYTN+++ LKGK+L+AALM  AKFDGAD++EVVM
Sbjct: 92  CEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVM 151

Query: 204 SKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTII 263
           SKAYAV ASFKGV+F+NAV+DRVNFGK+NL+GA+F+NTVLSGSTF++A L+D VFEDTII
Sbjct: 152 SKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTII 211

Query: 264 GYIDLQKLCVNPTISPEGRAELGCR 289
           GYIDLQK+C N +I+ EGR  LGCR
Sbjct: 212 GYIDLQKICRNESINEEGRLVLGCR 236

[Close]
BLAST of Cp4.1LG14g07150 vs. Swiss-Prot
Match: TL203_ARATH (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-10
Identity = 47/157 (29.94%), Postives = 72/157 (45.86%), Query Frame = 1 

Query: 136 PLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDG 195
           P   E NR E    G   G  +       DL    ++NE    +  +  +A M E+ F G
Sbjct: 87  PAMAELNRFEADTRGE-FGIGSAAQYGSADLSKTVHSNEN--FRRANFTSADMRESDFSG 146

Query: 196 ADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQD 255
           +  +   + KA A  A+F G D S+ ++DR+   +ANL  A+   +VL+ S    A+++ 
Sbjct: 147 STFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEG 206

Query: 256 AVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGC 288
           A F D +I  +  Q LC      NP    + R  LGC
Sbjct: 207 ADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

[Close]
BLAST of Cp4.1LG14g07150 vs. Swiss-Prot
Match: RFR32_CYAA5 (Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.7e-07
Identity = 35/119 (29.41%), Postives = 57/119 (47.90%), Query Frame = 1 

Query: 180 GKSLAAAL-----MSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQ 239
           GKSL  A      ++++ F  ADL   V + +  +GA   G D +N +    +F  A+L 
Sbjct: 61  GKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLT 120

Query: 240 GALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGCR 289
            A+    ++  + FDDA++  A F   ++   ++ KLC     VNP      R  LGC+
Sbjct: 121 NAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLGCQ 179

[Close]
BLAST of Cp4.1LG14g07150 vs. TrEMBL
Match: A0A0A0LC74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238170 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 2.1e-100
Identity = 184/198 (92.93%), Postives = 193/198 (97.47%), Query Frame = 1 

Query: 91  SNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVG 150
           + R+GAEPRE+LSP KHI +VACGLLAVWALTNTSP  AANQRLPPLSTEP+RCERAFVG
Sbjct: 40  ATRDGAEPRENLSPCKHISTVACGLLAVWALTNTSPVIAANQRLPPLSTEPDRCERAFVG 99

Query: 151 NTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVG 210
           NTIGQANGVYDKPIDLRFCDYTNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVG
Sbjct: 100 NTIGQANGVYDKPIDLRFCDYTNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVG 159

Query: 211 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQK 270
           ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGYIDLQK
Sbjct: 160 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLEDAVFEDTIIGYIDLQK 219

Query: 271 LCVNPTISPEGRAELGCR 289
           LCVNPTISPEGRAELGCR
Sbjct: 220 LCVNPTISPEGRAELGCR 237

[Close]
BLAST of Cp4.1LG14g07150 vs. TrEMBL
Match: V4TLV7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021983mg PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.3e-89
Identity = 165/198 (83.33%), Postives = 181/198 (91.41%), Query Frame = 1 

Query: 91  SNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVG 150
           + RN +EP+ES S  K +  VACG LA WA+T  SP  AANQRLPPLSTEP+RCERAFVG
Sbjct: 41  ARRNSSEPKESFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVG 100

Query: 151 NTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVG 210
           NTIGQANGVYDKPIDLRFCDYTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVG
Sbjct: 101 NTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVG 160

Query: 211 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQK 270
           ASFKGVDFSNAVLDRVNFGKA+L+GA+FKNTVLSGSTF++A+LQDAVFEDTIIGYIDLQK
Sbjct: 161 ASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQK 220

Query: 271 LCVNPTISPEGRAELGCR 289
           LC N T+SP+GRAELGCR
Sbjct: 221 LCTNTTLSPDGRAELGCR 238

[Close]
BLAST of Cp4.1LG14g07150 vs. TrEMBL
Match: W9QE42_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020914 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.7e-89
Identity = 165/202 (81.68%), Postives = 188/202 (93.07%), Query Frame = 1 

Query: 89  TESNRNGAEPRES--LSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCER 148
           +E +R+G E +E+  +SP+K + +VACG+LAVWA+T  SP  AA+QRLPPLSTEPNRCER
Sbjct: 40  SEVSRDGPELKENNNMSPTKQLKNVACGVLAVWAVTTASPVVAASQRLPPLSTEPNRCER 99

Query: 149 AFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKA 208
           AFVGNTIGQANGVYDKP+DLRFCDY+NEKS LKGKSLAAALMS+AKFDGAD++EVVMSKA
Sbjct: 100 AFVGNTIGQANGVYDKPLDLRFCDYSNEKSNLKGKSLAAALMSDAKFDGADMTEVVMSKA 159

Query: 209 YAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYI 268
           YAVGASFKGVDFSNAV+DRVNFGKA+LQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGY+
Sbjct: 160 YAVGASFKGVDFSNAVIDRVNFGKADLQGALFKNTVLSGSTFDDAKLEDAVFEDTIIGYV 219

Query: 269 DLQKLCVNPTISPEGRAELGCR 289
           DLQKLC N TISP+GRAELGCR
Sbjct: 220 DLQKLCTNKTISPDGRAELGCR 241

[Close]
BLAST of Cp4.1LG14g07150 vs. TrEMBL
Match: A0A0D2ST72_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G019700 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.5e-85
Identity = 162/211 (76.78%), Postives = 180/211 (85.31%), Query Frame = 1 

Query: 78  KGKEYRVNWTLTESNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPL 137
           KGK+ +      ++++   +  ES SP K + +VAC LLAV  +   SP  AANQRLPPL
Sbjct: 124 KGKDEQQLSEAEKASKRVPKSEESSSPFKELRTVACALLAVCTVATASPVIAANQRLPPL 183

Query: 138 STEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGAD 197
           STEPNRCERAFVGNTIGQANGVYDKP+DLRFCDYTNEKS LKGKSLAAALMS+AKFDGAD
Sbjct: 184 STEPNRCERAFVGNTIGQANGVYDKPLDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGAD 243

Query: 198 LSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAV 257
           +SE VMSKAYAVGASFKG DFSNAVLDRVNFGKANLQGA+FKNTVLSGSTFD+A+L+DAV
Sbjct: 244 MSEAVMSKAYAVGASFKGTDFSNAVLDRVNFGKANLQGAIFKNTVLSGSTFDNAQLEDAV 303

Query: 258 FEDTIIGYIDLQKLCVNPTISPEGRAELGCR 289
           FEDTIIGYIDLQKLC N +IS EGR ELGCR
Sbjct: 304 FEDTIIGYIDLQKLCTNTSISAEGRVELGCR 334

[Close]
BLAST of Cp4.1LG14g07150 vs. TrEMBL
Match: A0A0D2SYQ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G019700 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 4.3e-85
Identity = 163/212 (76.89%), Postives = 181/212 (85.38%), Query Frame = 1 

Query: 78  KGK-EYRVNWTLTESNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPP 137
           KGK E +++     +++   +  ES SP K + +VAC LLAV  +   SP  AANQRLPP
Sbjct: 124 KGKDEQQLSEAEKAASKRVPKSEESSSPFKELRTVACALLAVCTVATASPVIAANQRLPP 183

Query: 138 LSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGA 197
           LSTEPNRCERAFVGNTIGQANGVYDKP+DLRFCDYTNEKS LKGKSLAAALMS+AKFDGA
Sbjct: 184 LSTEPNRCERAFVGNTIGQANGVYDKPLDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGA 243

Query: 198 DLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDA 257
           D+SE VMSKAYAVGASFKG DFSNAVLDRVNFGKANLQGA+FKNTVLSGSTFD+A+L+DA
Sbjct: 244 DMSEAVMSKAYAVGASFKGTDFSNAVLDRVNFGKANLQGAIFKNTVLSGSTFDNAQLEDA 303

Query: 258 VFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 289
           VFEDTIIGYIDLQKLC N +IS EGR ELGCR
Sbjct: 304 VFEDTIIGYIDLQKLCTNTSISAEGRVELGCR 335

[Close]
BLAST of Cp4.1LG14g07150 vs. TAIR10
Match: AT5G53490.3 (AT5G53490.3 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 294.3 bits (752), Expect = 8.3e-80
Identity = 142/199 (71.36%), Postives = 170/199 (85.43%), Query Frame = 1 

Query: 90  ESNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFV 149
           E+  NG   ++SL P K +GS+AC  L    LT  SP  AANQRLPPLSTEP+RCE+AFV
Sbjct: 52  ENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAFV 111

Query: 150 GNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAV 209
           GNTIGQANGVYDKP+DLRFCDYTN+++ LKGK+L+AALM  AKFDGAD++EVVMSKAYAV
Sbjct: 112 GNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAV 171

Query: 210 GASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQ 269
            ASFKGV+F+NAV+DRVNFGK+NL+GA+F+NTVLSGSTF++A L+D VFEDTIIGYIDLQ
Sbjct: 172 EASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQ 231

Query: 270 KLCVNPTISPEGRAELGCR 289
           K+C N +I+ EGR  LGCR
Sbjct: 232 KICRNESINEEGRLVLGCR 250

[Close]
BLAST of Cp4.1LG14g07150 vs. TAIR10
Match: AT1G12250.1 (AT1G12250.1 Pentapeptide repeat-containing protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-11
Identity = 47/157 (29.94%), Postives = 72/157 (45.86%), Query Frame = 1 

Query: 136 PLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDG 195
           P   E NR E    G   G  +       DL    ++NE    +  +  +A M E+ F G
Sbjct: 87  PAMAELNRFEADTRGE-FGIGSAAQYGSADLSKTVHSNEN--FRRANFTSADMRESDFSG 146

Query: 196 ADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQD 255
           +  +   + KA A  A+F G D S+ ++DR+   +ANL  A+   +VL+ S    A+++ 
Sbjct: 147 STFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAKIEG 206

Query: 256 AVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGC 288
           A F D +I  +  Q LC      NP    + R  LGC
Sbjct: 207 ADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

[Close]
BLAST of Cp4.1LG14g07150 vs. NCBI nr
Match: gi|659111944|ref|XP_008455988.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 375.2 bits (962), Expect = 1.0e-100
Identity = 185/198 (93.43%), Postives = 193/198 (97.47%), Query Frame = 1 

Query: 91  SNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVG 150
           + R+GA+PRE+LSP KHI +VACGLLAVWALTNTSP  AANQRLPPLSTEPNRCERAFVG
Sbjct: 40  ATRDGAKPRENLSPCKHISTVACGLLAVWALTNTSPVIAANQRLPPLSTEPNRCERAFVG 99

Query: 151 NTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVG 210
           NTIGQANGVYDKPIDLRFCDYTNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVG
Sbjct: 100 NTIGQANGVYDKPIDLRFCDYTNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVG 159

Query: 211 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQK 270
           ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDA+LQDAVFEDTIIGYIDLQK
Sbjct: 160 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQK 219

Query: 271 LCVNPTISPEGRAELGCR 289
           LCVNPTISPEGRAELGCR
Sbjct: 220 LCVNPTISPEGRAELGCR 237

[Close]
BLAST of Cp4.1LG14g07150 vs. NCBI nr
Match: gi|778680423|ref|XP_011651313.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 373.6 bits (958), Expect = 3.0e-100
Identity = 184/198 (92.93%), Postives = 193/198 (97.47%), Query Frame = 1 

Query: 91  SNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVG 150
           + R+GAEPRE+LSP KHI +VACGLLAVWALTNTSP  AANQRLPPLSTEP+RCERAFVG
Sbjct: 40  ATRDGAEPRENLSPCKHISTVACGLLAVWALTNTSPVIAANQRLPPLSTEPDRCERAFVG 99

Query: 151 NTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVG 210
           NTIGQANGVYDKPIDLRFCDYTNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVG
Sbjct: 100 NTIGQANGVYDKPIDLRFCDYTNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVG 159

Query: 211 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQK 270
           ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGYIDLQK
Sbjct: 160 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLEDAVFEDTIIGYIDLQK 219

Query: 271 LCVNPTISPEGRAELGCR 289
           LCVNPTISPEGRAELGCR
Sbjct: 220 LCVNPTISPEGRAELGCR 237

[Close]
BLAST of Cp4.1LG14g07150 vs. NCBI nr
Match: gi|567897328|ref|XP_006441152.1| (hypothetical protein CICLE_v10021983mg [Citrus clementina])

HSP 1 Score: 337.8 bits (865), Expect = 1.9e-89
Identity = 165/198 (83.33%), Postives = 181/198 (91.41%), Query Frame = 1 

Query: 91  SNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVG 150
           + RN +EP+ES S  K +  VACG LA WA+T  SP  AANQRLPPLSTEP+RCERAFVG
Sbjct: 41  ARRNSSEPKESFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVG 100

Query: 151 NTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVG 210
           NTIGQANGVYDKPIDLRFCDYTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVG
Sbjct: 101 NTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVG 160

Query: 211 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQK 270
           ASFKGVDFSNAVLDRVNFGKA+L+GA+FKNTVLSGSTF++A+LQDAVFEDTIIGYIDLQK
Sbjct: 161 ASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQK 220

Query: 271 LCVNPTISPEGRAELGCR 289
           LC N T+SP+GRAELGCR
Sbjct: 221 LCTNTTLSPDGRAELGCR 238

[Close]
BLAST of Cp4.1LG14g07150 vs. NCBI nr
Match: gi|703066942|ref|XP_010087838.1| (hypothetical protein L484_020914 [Morus notabilis])

HSP 1 Score: 337.4 bits (864), Expect = 2.4e-89
Identity = 165/202 (81.68%), Postives = 188/202 (93.07%), Query Frame = 1 

Query: 89  TESNRNGAEPRES--LSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCER 148
           +E +R+G E +E+  +SP+K + +VACG+LAVWA+T  SP  AA+QRLPPLSTEPNRCER
Sbjct: 40  SEVSRDGPELKENNNMSPTKQLKNVACGVLAVWAVTTASPVVAASQRLPPLSTEPNRCER 99

Query: 149 AFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKA 208
           AFVGNTIGQANGVYDKP+DLRFCDY+NEKS LKGKSLAAALMS+AKFDGAD++EVVMSKA
Sbjct: 100 AFVGNTIGQANGVYDKPLDLRFCDYSNEKSNLKGKSLAAALMSDAKFDGADMTEVVMSKA 159

Query: 209 YAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYI 268
           YAVGASFKGVDFSNAV+DRVNFGKA+LQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGY+
Sbjct: 160 YAVGASFKGVDFSNAVIDRVNFGKADLQGALFKNTVLSGSTFDDAKLEDAVFEDTIIGYV 219

Query: 269 DLQKLCVNPTISPEGRAELGCR 289
           DLQKLC N TISP+GRAELGCR
Sbjct: 220 DLQKLCTNKTISPDGRAELGCR 241

[Close]
BLAST of Cp4.1LG14g07150 vs. NCBI nr
Match: gi|568877960|ref|XP_006491985.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Citrus sinensis])

HSP 1 Score: 332.0 bits (850), Expect = 1.0e-87
Identity = 162/198 (81.82%), Postives = 179/198 (90.40%), Query Frame = 1 

Query: 91  SNRNGAEPRESLSPSKHIGSVACGLLAVWALTNTSPAFAANQRLPPLSTEPNRCERAFVG 150
           + RN +E +ES S  K +  VACG LA WA+T  SP  AANQRLPPLSTEP+RCERAFVG
Sbjct: 41  ARRNSSESKESFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVG 100

Query: 151 NTIGQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVG 210
           NTIGQANGVYDKPIDLRFCDYTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVG
Sbjct: 101 NTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVG 160

Query: 211 ASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQK 270
           ASFKGVDFSNAVLDRVNFGKA+L+GA+FKNTVLSGSTF++A+LQDAVFEDTIIGY+DLQK
Sbjct: 161 ASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYVDLQK 220

Query: 271 LCVNPTISPEGRAELGCR 289
           LC N T+SP+GR ELGCR
Sbjct: 221 LCTNTTLSPDGRDELGCR 238

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g07150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TL17_ARATH8.6e-7969.76Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL1... [more]
TL203_ARATH2.9e-1029.94Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.... [more]
RFR32_CYAA56.7e-0729.41Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32... [more]
BLAST of Cp4.1LG14g07150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC74_CUCSA2.1e-10092.93Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238170 PE=4 SV=1[more]
V4TLV7_9ROSI1.3e-8983.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021983mg PE=4 SV=1[more]
W9QE42_9ROSA1.7e-8981.68Uncharacterized protein OS=Morus notabilis GN=L484_020914 PE=4 SV=1[more]
A0A0D2ST72_GOSRA1.5e-8576.78Uncharacterized protein OS=Gossypium raimondii GN=B456_008G019700 PE=4 SV=1[more]
A0A0D2SYQ8_GOSRA4.3e-8576.89Uncharacterized protein OS=Gossypium raimondii GN=B456_008G019700 PE=4 SV=1[more]
BLAST of Cp4.1LG14g07150 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53490.38.3e-8071.36 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G12250.11.6e-1129.94 Pentapeptide repeat-containing protein[more]
BLAST of Cp4.1LG14g07150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111944|ref|XP_008455988.1|1.0e-10093.43PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis melo][more]
gi|778680423|ref|XP_011651313.1|3.0e-10092.93PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis sativus][more]
gi|567897328|ref|XP_006441152.1|1.9e-8983.33hypothetical protein CICLE_v10021983mg [Citrus clementina][more]
gi|703066942|ref|XP_010087838.1|2.4e-8981.68hypothetical protein L484_020914 [Morus notabilis][more]
gi|568877960|ref|XP_006491985.1|1.0e-8781.82PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g07150.1Cp4.1LG14g07150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001646Pentapeptide repeatPFAMPF13599Pentapeptide_4coord: 211..269
score: 2.
NoneNo IPR availablePANTHERPTHR14136UNCHARACTERIZEDcoord: 93..288
score: 7.8E
NoneNo IPR availablePANTHERPTHR14136:SF11THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTICcoord: 93..288
score: 7.8E
NoneNo IPR availableunknownSSF141571Pentapeptide repeat-likecoord: 166..270
score: 9.29

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g07150Cucsa.032310Cucumber (Gy14) v1cgycpeB0006
Cp4.1LG14g07150CmaCh16G000360Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g07150CmaCh18G013180Cucurbita maxima (Rimu)cmacpeB424
Cp4.1LG14g07150CmoCh18G013480Cucurbita moschata (Rifu)cmocpeB385
Cp4.1LG14g07150CmoCh16G000420Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g07150Cla004271Watermelon (97103) v1cpewmB227
Cp4.1LG14g07150Csa3G238170Cucumber (Chinese Long) v2cpecuB206
Cp4.1LG14g07150MELO3C019377Melon (DHL92) v3.5.1cpemeB193
Cp4.1LG14g07150ClCG05G009090Watermelon (Charleston Gray)cpewcgB207
Cp4.1LG14g07150CSPI03G19640Wild cucumber (PI 183967)cpecpiB209
Cp4.1LG14g07150Lsi05G001160Bottle gourd (USVL1VR-Ls)cpelsiB178
Cp4.1LG14g07150MELO3C019377.2Melon (DHL92) v3.6.1cpemedB236
Cp4.1LG14g07150CsaV3_3G019700Cucumber (Chinese Long) v3cpecucB0248
Cp4.1LG14g07150Bhi01G001130Wax gourdcpewgoB0296
Cp4.1LG14g07150CsGy3G019570Cucumber (Gy14) v2cgybcpeB318
Cp4.1LG14g07150Carg15055Silver-seed gourdcarcpeB1376
Cp4.1LG14g07150Carg20340Silver-seed gourdcarcpeB0762
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g07150Cp4.1LG09g00290Cucurbita pepo (Zucchini)cpecpeB024
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g07150Wax gourdcpewgoB0285
Cp4.1LG14g07150Cucurbita pepo (Zucchini)cpecpeB023
Cp4.1LG14g07150Cucurbita pepo (Zucchini)cpecpeB197
Cp4.1LG14g07150Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG14g07150Cucumber (Gy14) v1cgycpeB0573
Cp4.1LG14g07150Cucurbita maxima (Rimu)cmacpeB307
Cp4.1LG14g07150Cucurbita maxima (Rimu)cmacpeB425
Cp4.1LG14g07150Cucurbita maxima (Rimu)cmacpeB608
Cp4.1LG14g07150Cucurbita moschata (Rifu)cmocpeB270
Cp4.1LG14g07150Cucurbita moschata (Rifu)cmocpeB386
Cp4.1LG14g07150Cucurbita moschata (Rifu)cmocpeB557
Cp4.1LG14g07150Wild cucumber (PI 183967)cpecpiB227
Cp4.1LG14g07150Cucumber (Chinese Long) v2cpecuB225
Cp4.1LG14g07150Bottle gourd (USVL1VR-Ls)cpelsiB163
Cp4.1LG14g07150Watermelon (Charleston Gray)cpewcgB199
Cp4.1LG14g07150Watermelon (97103) v1cpewmB229
Cp4.1LG14g07150Melon (DHL92) v3.5.1cpemeB179
Cp4.1LG14g07150Cucumber (Gy14) v2cgybcpeB617
Cp4.1LG14g07150Melon (DHL92) v3.6.1cpemedB215
Cp4.1LG14g07150Silver-seed gourdcarcpeB0714
Cp4.1LG14g07150Silver-seed gourdcarcpeB0761
Cp4.1LG14g07150Cucumber (Chinese Long) v3cpecucB0275