CmoCh16G000420 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGGGAGAGAATTCATTTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTACAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGGTTACCATTTCTTCTATCTGCTTCGAGTTTTTTCTGTCTCAACTTTTACGTACTTTGTCTTTGAACACTTGTTTAATGCGTTTGTTTACTCGAATAATTGCTACACTGAGTACCCTTTTGTGGGTAAATTGCGTCAGAGTCTGGGGAGAACTGTTTTCTTCTTCTCGGATCTTATGTTGTTAGGCTTAGAACTGTTTTCTCCTGAAATGTGCTTAGCTGCATGCTATTTGAAATCTTCACCACGTAGAGGGAAAGGAAAGGAATATCATGTGAACTGGACTTTAACTGAATGTGTATCCAAGCATTATGAGTTATATTTTAATGGAGCCTTTTCTGGCATACCATTTTATTAACTGATGAAAAAAAGCGTTCCTGTGCTGCAATTACAGCTAATAGGGATGGGGCTGTACCAAGAGAGAGCTTGTCACCCTGCAACCATATCGGATCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGGTTAATAGCTTTTGGGTTTAGTACTGATTTAACCATTGACATGACTTCTTAGATATTCAAACTTACCATGATGTTTGGGTACATAAGCCAAAAACTTATCATGAAGTTAAATTTAGGCTTAAGATGTCAAACCTAGTTACTCTCCAGGGGATTGAATGTGTAATTTGGATTGGAAGCCCTGCTTTCTACTTCACCAATCTTTCTATTGACATGCAGTTCATCGTCCTTCGGATACTCTTTATTTTTTTTGTGTTCTTCCTTTTCTAGTCATGATTGATAAGCATCGTCCACTTTCTGTGGCAAACATCAAACAACTTATAATATTTGAGTTTGAAGAAGAAAGCTGTTGAACTCATAATATCCGGGACTTGCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCGAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTAAACCTCTCTCTATCTCACCCCCACTCGAATAGGGAGGTGGGTTGGTAACAAATCTTCATGTTCTAGCACGAATATGGCTTTAAGAATGACTTAGTTTCCAAAGAAGCGCATCTAGTGCTTCCAATACTTGATATCCAAGGAAGCGCATCTAGTGCTTCCAATACTTGATATCCAAGGAAGCGCATCTAGTGCTTCCAATACTTGATATGGTACATAGACAAAATCCACGAGTTCAACACATGCTAGCTTACAGAATAAATCCCAGCCTCCTAATAATATGGCTTTAAGTAAATGAGTACATATTGCAGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATACAGTTTTTATAGTTTCACCATATTGTATTGTATAAACAACTTGATGAGTTTGGTAAGTAATACATCTTCAAAGAGAGAACCCCCTCTCCCATTGAAGCATTATTGCTGTTTTCTATTTTCATTTCATTTTTGCACTCTGAACCCATCCACCTTAACTTTTTGTAGGGAGAAAATCTGATGATTTTGCTTTCATTGTTATTAGAGGTTGTGATTTTACTCTGTTATAATTATATTTACAGTTCAAACTCACCAAAGAAGCGCATCTAGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGACCGG CGGGAGAGAATTCATTTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTACAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGCTAATAGGGATGGGGCTGTACCAAGAGAGAGCTTGTCACCCTGCAACCATATCGGATCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGGTTAATAGCTTTTGGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCGAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATACAGTTTTTATAGTTTCACCATATTGTATTGTATAAACAACTTGATGAGTTTGGTAAGTAATACATCTTCAAAGAGAGAACCCCCTCTCCCATTGAAGCATTATTGCTGTTTTCTATTTTCATTTCATTTTTGCACTCTGAACCCATCCACCTTAACTTTTTGTAGGGAGAAAATCTGATGATTTTGCTTTCATTGTTATTAGAGGTTGTGATTTTACTCTGTTATAATTATATTTACAGTTCAAACTCACCAAAGAAGCGCATCTAGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGACCGG ATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTACAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGCTAATAGGGATGGGGCTGTACCAAGAGAGAGCTTGTCACCCTGCAACCATATCGGATCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGGTTAATAGCTTTTGGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCGAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGA
BLAST of CmoCh16G000420 vs. Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL17 PE=1 SV=2) HSP 1 Score: 296.2 bits (757), Expect = 3.3e-79 Identity = 156/247 (63.16%), Postives = 190/247 (76.92%), Query Frame = 1
BLAST of CmoCh16G000420 vs. Swiss-Prot
Match: TL203_ARATH (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.3 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 6.5e-11 Identity = 52/173 (30.06%), Postives = 81/173 (46.82%), Query Frame = 1
BLAST of CmoCh16G000420 vs. Swiss-Prot
Match: RFR32_CYAA5 (Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.7e-07 Identity = 35/119 (29.41%), Postives = 57/119 (47.90%), Query Frame = 1
BLAST of CmoCh16G000420 vs. TrEMBL
Match: A0A0A0LC74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238170 PE=4 SV=1) HSP 1 Score: 414.1 bits (1063), Expect = 1.2e-112 Identity = 207/242 (85.54%), Postives = 217/242 (89.67%), Query Frame = 1
BLAST of CmoCh16G000420 vs. TrEMBL
Match: V4TLV7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021983mg PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.4e-92 Identity = 178/243 (73.25%), Postives = 200/243 (82.30%), Query Frame = 1
BLAST of CmoCh16G000420 vs. TrEMBL
Match: W9QE42_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020914 PE=4 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 1.2e-91 Identity = 178/244 (72.95%), Postives = 203/244 (83.20%), Query Frame = 1
BLAST of CmoCh16G000420 vs. TrEMBL
Match: B9I1Y5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02510g PE=4 SV=2) HSP 1 Score: 337.0 bits (863), Expect = 1.9e-89 Identity = 173/242 (71.49%), Postives = 195/242 (80.58%), Query Frame = 1
BLAST of CmoCh16G000420 vs. TrEMBL
Match: A0A067JIP7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27125 PE=4 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 5.0e-87 Identity = 174/250 (69.60%), Postives = 190/250 (76.00%), Query Frame = 1
BLAST of CmoCh16G000420 vs. TAIR10
Match: AT5G53490.3 (AT5G53490.3 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 291.6 bits (745), Expect = 4.5e-79 Identity = 154/255 (60.39%), Postives = 189/255 (74.12%), Query Frame = 1
BLAST of CmoCh16G000420 vs. TAIR10
Match: AT1G12250.1 (AT1G12250.1 Pentapeptide repeat-containing protein) HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12 Identity = 52/173 (30.06%), Postives = 81/173 (46.82%), Query Frame = 1
BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|659111944|ref|XP_008455988.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis melo]) HSP 1 Score: 425.6 bits (1093), Expect = 5.7e-116 Identity = 214/242 (88.43%), Postives = 221/242 (91.32%), Query Frame = 1
BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|778680423|ref|XP_011651313.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis sativus]) HSP 1 Score: 414.1 bits (1063), Expect = 1.7e-112 Identity = 207/242 (85.54%), Postives = 217/242 (89.67%), Query Frame = 1
BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|567897328|ref|XP_006441152.1| (hypothetical protein CICLE_v10021983mg [Citrus clementina]) HSP 1 Score: 347.4 bits (890), Expect = 2.0e-92 Identity = 178/243 (73.25%), Postives = 200/243 (82.30%), Query Frame = 1
BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|568877960|ref|XP_006491985.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Citrus sinensis]) HSP 1 Score: 344.7 bits (883), Expect = 1.3e-91 Identity = 177/243 (72.84%), Postives = 199/243 (81.89%), Query Frame = 1
BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|703066942|ref|XP_010087838.1| (hypothetical protein L484_020914 [Morus notabilis]) HSP 1 Score: 344.4 bits (882), Expect = 1.7e-91 Identity = 178/244 (72.95%), Postives = 203/244 (83.20%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |