CmoCh16G000420 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G000420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionThylakoid lumenal 17.4 kDa protein
LocationCmo_Chr16 : 183786 .. 185910 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGGAGAGAATTCATTTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTACAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGGTTACCATTTCTTCTATCTGCTTCGAGTTTTTTCTGTCTCAACTTTTACGTACTTTGTCTTTGAACACTTGTTTAATGCGTTTGTTTACTCGAATAATTGCTACACTGAGTACCCTTTTGTGGGTAAATTGCGTCAGAGTCTGGGGAGAACTGTTTTCTTCTTCTCGGATCTTATGTTGTTAGGCTTAGAACTGTTTTCTCCTGAAATGTGCTTAGCTGCATGCTATTTGAAATCTTCACCACGTAGAGGGAAAGGAAAGGAATATCATGTGAACTGGACTTTAACTGAATGTGTATCCAAGCATTATGAGTTATATTTTAATGGAGCCTTTTCTGGCATACCATTTTATTAACTGATGAAAAAAAGCGTTCCTGTGCTGCAATTACAGCTAATAGGGATGGGGCTGTACCAAGAGAGAGCTTGTCACCCTGCAACCATATCGGATCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGGTTAATAGCTTTTGGGTTTAGTACTGATTTAACCATTGACATGACTTCTTAGATATTCAAACTTACCATGATGTTTGGGTACATAAGCCAAAAACTTATCATGAAGTTAAATTTAGGCTTAAGATGTCAAACCTAGTTACTCTCCAGGGGATTGAATGTGTAATTTGGATTGGAAGCCCTGCTTTCTACTTCACCAATCTTTCTATTGACATGCAGTTCATCGTCCTTCGGATACTCTTTATTTTTTTTGTGTTCTTCCTTTTCTAGTCATGATTGATAAGCATCGTCCACTTTCTGTGGCAAACATCAAACAACTTATAATATTTGAGTTTGAAGAAGAAAGCTGTTGAACTCATAATATCCGGGACTTGCAGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCGAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTAAACCTCTCTCTATCTCACCCCCACTCGAATAGGGAGGTGGGTTGGTAACAAATCTTCATGTTCTAGCACGAATATGGCTTTAAGAATGACTTAGTTTCCAAAGAAGCGCATCTAGTGCTTCCAATACTTGATATCCAAGGAAGCGCATCTAGTGCTTCCAATACTTGATATCCAAGGAAGCGCATCTAGTGCTTCCAATACTTGATATGGTACATAGACAAAATCCACGAGTTCAACACATGCTAGCTTACAGAATAAATCCCAGCCTCCTAATAATATGGCTTTAAGTAAATGAGTACATATTGCAGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATACAGTTTTTATAGTTTCACCATATTGTATTGTATAAACAACTTGATGAGTTTGGTAAGTAATACATCTTCAAAGAGAGAACCCCCTCTCCCATTGAAGCATTATTGCTGTTTTCTATTTTCATTTCATTTTTGCACTCTGAACCCATCCACCTTAACTTTTTGTAGGGAGAAAATCTGATGATTTTGCTTTCATTGTTATTAGAGGTTGTGATTTTACTCTGTTATAATTATATTTACAGTTCAAACTCACCAAAGAAGCGCATCTAGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGACCGG

mRNA sequence

CGGGAGAGAATTCATTTTTCCAAATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTACAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGCTAATAGGGATGGGGCTGTACCAAGAGAGAGCTTGTCACCCTGCAACCATATCGGATCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGGTTAATAGCTTTTGGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCGAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGATTTCAATACAGTTTTTATAGTTTCACCATATTGTATTGTATAAACAACTTGATGAGTTTGGTAAGTAATACATCTTCAAAGAGAGAACCCCCTCTCCCATTGAAGCATTATTGCTGTTTTCTATTTTCATTTCATTTTTGCACTCTGAACCCATCCACCTTAACTTTTTGTAGGGAGAAAATCTGATGATTTTGCTTTCATTGTTATTAGAGGTTGTGATTTTACTCTGTTATAATTATATTTACAGTTCAAACTCACCAAAGAAGCGCATCTAGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGACCGG

Coding sequence (CDS)

ATGGCGACTTTATCAATTCCATTCTCTCAGAATGGTTTCTCTCGCAGGTTCTTCTCTGCAAAACACCCACCAGTTACAGCCCCATTTTCCCATTCGCTCGCCCCTATCAGTTGCTCAGCTAATAGGGATGGGGCTGTACCAAGAGAGAGCTTGTCACCCTGCAACCATATCGGATCTGTAGCTTGTGGTCTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGCGTTTGCAGCTAATCAGGTTAATAGCTTTTGGAGGCTTCCTCCACTGTCGACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAACACAATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAGAGCCAGTTAAAAGGGAAATCTCTTGCTGCTGCGTTGATGTCAGAAGCGAAGTTTGATGGTGCAGACCTCTCTGAAGTGGTGATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCGAATGCAGTTCTAGACAGGGTAAATTTTGGAAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTACTTTCAGGGTCCACATTTGATGATGCTGAGTTACAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAGCTTTGTGTAAATCCAACTATCAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGA
BLAST of CmoCh16G000420 vs. Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL17 PE=1 SV=2)

HSP 1 Score: 296.2 bits (757), Expect = 3.3e-79
Identity = 156/247 (63.16%), Postives = 190/247 (76.92%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSA--KHPPVTAPFSHSLAPISCSA--NRD-GAVPRESLSPCN 60
           MA+L + F++N  S  FFS   +  P       SL  + CSA  NR+ G   ++SL P  
Sbjct: 1   MASLPVQFTRNQISSPFFSVNLRREP------RSLVTVHCSAGENRENGEGVKKSLFPLK 60

Query: 61  HIGSVACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYD 120
            +GS+AC  L    LT  SP  AANQ     RLPPLSTEP+RCE+AFVGNTIGQANGVYD
Sbjct: 61  ELGSIACAALCACTLTIASPVIAANQ-----RLPPLSTEPDRCEKAFVGNTIGQANGVYD 120

Query: 121 KPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNA 180
           KP+DLRFCDYTN+++ LKGK+L+AALM  AKFDGAD++EVVMSKAYAV ASFKGV+F+NA
Sbjct: 121 KPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNA 180

Query: 181 VLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEG 240
           V+DRVNFGK+NL+GA+F+NTVLSGSTF++A L+D VFEDTIIGYIDLQK+C N +I+ EG
Sbjct: 181 VIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRNESINEEG 236

Query: 241 RAELGCR 243
           R  LGCR
Sbjct: 241 RLVLGCR 236

BLAST of CmoCh16G000420 vs. Swiss-Prot
Match: TL203_ARATH (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.5e-11
Identity = 52/173 (30.06%), Postives = 81/173 (46.82%), Query Frame = 1

Query: 74  SPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLK 133
           S A AA  + S   +P ++ E NR E    G   G  +       DL    ++NE    +
Sbjct: 72  SAAMAAAVIASSSGVPAMA-ELNRFEADTRGE-FGIGSAAQYGSADLSKTVHSNEN--FR 131

Query: 134 GKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFK 193
             +  +A M E+ F G+  +   + KA A  A+F G D S+ ++DR+   +ANL  A+  
Sbjct: 132 RANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLV 191

Query: 194 NTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGC 242
            +VL+ S    A+++ A F D +I  +  Q LC      NP    + R  LGC
Sbjct: 192 RSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

BLAST of CmoCh16G000420 vs. Swiss-Prot
Match: RFR32_CYAA5 (Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-07
Identity = 35/119 (29.41%), Postives = 57/119 (47.90%), Query Frame = 1

Query: 134 GKSLAAAL-----MSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQ 193
           GKSL  A      ++++ F  ADL   V + +  +GA   G D +N +    +F  A+L 
Sbjct: 61  GKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLT 120

Query: 194 GALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGCR 243
            A+    ++  + FDDA++  A F   ++   ++ KLC     VNP      R  LGC+
Sbjct: 121 NAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLGCQ 179

BLAST of CmoCh16G000420 vs. TrEMBL
Match: A0A0A0LC74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238170 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 1.2e-112
Identity = 207/242 (85.54%), Postives = 217/242 (89.67%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSAKHPPVTAPFSHSLAPISCSANRDGAVPRESLSPCNHIGSV 60
           MA LS P S NGFSR FFS +   +  PF HSL  I+CSA RDGA PRE+LSPC HI +V
Sbjct: 1   MAALSTPLSHNGFSRSFFSTRRSKIVYPFPHSLPRITCSATRDGAEPRENLSPCKHISTV 60

Query: 61  ACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDL 120
           ACGLLAVWALTNTSP  AANQ     RLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDL
Sbjct: 61  ACGLLAVWALTNTSPVIAANQ-----RLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDL 120

Query: 121 RFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV 180
           RFCDYTNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV
Sbjct: 121 RFCDYTNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV 180

Query: 181 NFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELG 240
           NFGKANLQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGYIDLQKLCVNPTISPEGRAELG
Sbjct: 181 NFGKANLQGALFKNTVLSGSTFDDAQLEDAVFEDTIIGYIDLQKLCVNPTISPEGRAELG 237

Query: 241 CR 243
           CR
Sbjct: 241 CR 237

BLAST of CmoCh16G000420 vs. TrEMBL
Match: V4TLV7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021983mg PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-92
Identity = 178/243 (73.25%), Postives = 200/243 (82.30%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSA-KHPPVTAPFSHSLAPISCSANRDGAVPRESLSPCNHIGS 60
           MAT+S+P S N  S +  S  +H       SHS   ++CSA R+ + P+ES S    +  
Sbjct: 1   MATISVPLSHNTSSLQHLSTIRHRFHFPRSSHSPLTVACSARRNSSEPKESFSHLKELKG 60

Query: 61  VACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPID 120
           VACG LA WA+T  SP  AANQ     RLPPLSTEP+RCERAFVGNTIGQANGVYDKPID
Sbjct: 61  VACGFLAAWAVTAASPVIAANQ-----RLPPLSTEPDRCERAFVGNTIGQANGVYDKPID 120

Query: 121 LRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDR 180
           LRFCDYTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVGASFKGVDFSNAVLDR
Sbjct: 121 LRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDR 180

Query: 181 VNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAEL 240
           VNFGKA+L+GA+FKNTVLSGSTF++A+LQDAVFEDTIIGYIDLQKLC N T+SP+GRAEL
Sbjct: 181 VNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQKLCTNTTLSPDGRAEL 238

Query: 241 GCR 243
           GCR
Sbjct: 241 GCR 238

BLAST of CmoCh16G000420 vs. TrEMBL
Match: W9QE42_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020914 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.2e-91
Identity = 178/244 (72.95%), Postives = 203/244 (83.20%), Query Frame = 1

Query: 2   ATLSIPFSQNGFSRRFFSAKHPPVTAPFSHSLAPISCS-ANRDGAVPRES--LSPCNHIG 61
           AT SIP +QN F  RF  +K   +    S+S   + CS  +RDG   +E+  +SP   + 
Sbjct: 3   ATSSIPLNQNVFRLRFKPSKRHALLPVESYSSPRVFCSEVSRDGPELKENNNMSPTKQLK 62

Query: 62  SVACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPI 121
           +VACG+LAVWA+T  SP  AA+Q     RLPPLSTEPNRCERAFVGNTIGQANGVYDKP+
Sbjct: 63  NVACGVLAVWAVTTASPVVAASQ-----RLPPLSTEPNRCERAFVGNTIGQANGVYDKPL 122

Query: 122 DLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLD 181
           DLRFCDY+NEKS LKGKSLAAALMS+AKFDGAD++EVVMSKAYAVGASFKGVDFSNAV+D
Sbjct: 123 DLRFCDYSNEKSNLKGKSLAAALMSDAKFDGADMTEVVMSKAYAVGASFKGVDFSNAVID 182

Query: 182 RVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAE 241
           RVNFGKA+LQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGY+DLQKLC N TISP+GRAE
Sbjct: 183 RVNFGKADLQGALFKNTVLSGSTFDDAKLEDAVFEDTIIGYVDLQKLCTNKTISPDGRAE 241

Query: 242 LGCR 243
           LGCR
Sbjct: 243 LGCR 241

BLAST of CmoCh16G000420 vs. TrEMBL
Match: B9I1Y5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02510g PE=4 SV=2)

HSP 1 Score: 337.0 bits (863), Expect = 1.9e-89
Identity = 173/242 (71.49%), Postives = 195/242 (80.58%), Query Frame = 1

Query: 2   ATLSIPFSQNGFSRRFFSAKHPPVTAPFSHSLAPISCSANRDGAVPRESLSPCN-HIGSV 61
           AT S+P SQN F    FS+       P  HS   I CS + DG+  RESL      I  V
Sbjct: 4   ATFSLPLSQNKFPLYHFSSARRRFPIPDLHSPLKICCSGSGDGSKSRESLFQFKKEINYV 63

Query: 62  ACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDL 121
           ACG+LA WA+T  SP  AA Q     RLPPLSTEPNRCE+AFVGNTIGQANGVYDKPIDL
Sbjct: 64  ACGILAAWAVTAASPVIAAGQ-----RLPPLSTEPNRCEKAFVGNTIGQANGVYDKPIDL 123

Query: 122 RFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV 181
           RFCDYTN+KS LKGKSLAAALMS+AKFDGAD++EVVMSKAYAVGASF+GVDFSNAVLDRV
Sbjct: 124 RFCDYTNDKSNLKGKSLAAALMSDAKFDGADMTEVVMSKAYAVGASFRGVDFSNAVLDRV 183

Query: 182 NFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELG 241
           NFGKA+L+GA+FKNTVLSGSTFD+A+L+DA+FEDTIIGYIDLQK+C N +I P+GRAELG
Sbjct: 184 NFGKADLKGAVFKNTVLSGSTFDEAQLEDAIFEDTIIGYIDLQKICRNTSIGPDGRAELG 240

Query: 242 CR 243
           CR
Sbjct: 244 CR 240

BLAST of CmoCh16G000420 vs. TrEMBL
Match: A0A067JIP7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27125 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 5.0e-87
Identity = 174/250 (69.60%), Postives = 190/250 (76.00%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSAKHPPVTAPFSHSLAPISCSANRDGAVPRESLS-------- 60
           MAT S+P SQN    R  S K      P       ISCS    G+  R+ L         
Sbjct: 1   MATFSLPLSQNNLCLRSLSPKRSRFPIP------EISCSGKTPGSTRRDQLDVIAYAKSK 60

Query: 61  PCNHIGSVACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANG 120
           P   + SVA  LLA WA+T  SP  AANQ     RLPPLSTEPNRCE+AFVGNTIGQANG
Sbjct: 61  PLKELQSVALSLLAAWAVTAASPVIAANQ-----RLPPLSTEPNRCEKAFVGNTIGQANG 120

Query: 121 VYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDF 180
           VYDKPIDLRFCDYTN+KS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVGASFK VDF
Sbjct: 121 VYDKPIDLRFCDYTNDKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKDVDF 180

Query: 181 SNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTIS 240
           SNAVLDRVNFGKANL+GA+FKN+VLSGSTFD+A+L DAVFEDTIIGYIDLQKLC N TI+
Sbjct: 181 SNAVLDRVNFGKANLEGAIFKNSVLSGSTFDEAKLTDAVFEDTIIGYIDLQKLCTNTTIT 239

Query: 241 PEGRAELGCR 243
           P+GRA LGCR
Sbjct: 241 PDGRATLGCR 239

BLAST of CmoCh16G000420 vs. TAIR10
Match: AT5G53490.3 (AT5G53490.3 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 291.6 bits (745), Expect = 4.5e-79
Identity = 154/255 (60.39%), Postives = 189/255 (74.12%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSA--KHPPVTAPFSHSLAPI----------SCSANRD-GAVP 60
           MA+L + F++N  S  FFS   +  P +    H  A +          S   NR+ G   
Sbjct: 1   MASLPVQFTRNQISSPFFSVNLRREPRSLVTVHCSAKVVYVILICIMFSAGENRENGEGV 60

Query: 61  RESLSPCNHIGSVACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTI 120
           ++SL P   +GS+AC  L    LT  SP  AANQ     RLPPLSTEP+RCE+AFVGNTI
Sbjct: 61  KKSLFPLKELGSIACAALCACTLTIASPVIAANQ-----RLPPLSTEPDRCEKAFVGNTI 120

Query: 121 GQANGVYDKPIDLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASF 180
           GQANGVYDKP+DLRFCDYTN+++ LKGK+L+AALM  AKFDGAD++EVVMSKAYAV ASF
Sbjct: 121 GQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASF 180

Query: 181 KGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCV 240
           KGV+F+NAV+DRVNFGK+NL+GA+F+NTVLSGSTF++A L+D VFEDTIIGYIDLQK+C 
Sbjct: 181 KGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICR 240

Query: 241 NPTISPEGRAELGCR 243
           N +I+ EGR  LGCR
Sbjct: 241 NESINEEGRLVLGCR 250

BLAST of CmoCh16G000420 vs. TAIR10
Match: AT1G12250.1 (AT1G12250.1 Pentapeptide repeat-containing protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12
Identity = 52/173 (30.06%), Postives = 81/173 (46.82%), Query Frame = 1

Query: 74  SPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSQLK 133
           S A AA  + S   +P ++ E NR E    G   G  +       DL    ++NE    +
Sbjct: 72  SAAMAAAVIASSSGVPAMA-ELNRFEADTRGE-FGIGSAAQYGSADLSKTVHSNEN--FR 131

Query: 134 GKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFK 193
             +  +A M E+ F G+  +   + KA A  A+F G D S+ ++DR+   +ANL  A+  
Sbjct: 132 RANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLV 191

Query: 194 NTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLC-----VNPTISPEGRAELGC 242
            +VL+ S    A+++ A F D +I  +  Q LC      NP    + R  LGC
Sbjct: 192 RSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|659111944|ref|XP_008455988.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 425.6 bits (1093), Expect = 5.7e-116
Identity = 214/242 (88.43%), Postives = 221/242 (91.32%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSAKHPPVTAPFSHSLAPISCSANRDGAVPRESLSPCNHIGSV 60
           MATLSIP SQNGFSR FFS K P +  PF HSL  I+CSA RDGA PRE+LSPC HI +V
Sbjct: 1   MATLSIPPSQNGFSRSFFSTKRPQIVYPFPHSLPRITCSATRDGAKPRENLSPCKHISTV 60

Query: 61  ACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDL 120
           ACGLLAVWALTNTSP  AANQ     RLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDL
Sbjct: 61  ACGLLAVWALTNTSPVIAANQ-----RLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDL 120

Query: 121 RFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV 180
           RFCDYTNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV
Sbjct: 121 RFCDYTNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV 180

Query: 181 NFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELG 240
           NFGKANLQGALFKNTVLSGSTFDDA+LQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELG
Sbjct: 181 NFGKANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELG 237

Query: 241 CR 243
           CR
Sbjct: 241 CR 237

BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|778680423|ref|XP_011651313.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 414.1 bits (1063), Expect = 1.7e-112
Identity = 207/242 (85.54%), Postives = 217/242 (89.67%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSAKHPPVTAPFSHSLAPISCSANRDGAVPRESLSPCNHIGSV 60
           MA LS P S NGFSR FFS +   +  PF HSL  I+CSA RDGA PRE+LSPC HI +V
Sbjct: 1   MAALSTPLSHNGFSRSFFSTRRSKIVYPFPHSLPRITCSATRDGAEPRENLSPCKHISTV 60

Query: 61  ACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDL 120
           ACGLLAVWALTNTSP  AANQ     RLPPLSTEP+RCERAFVGNTIGQANGVYDKPIDL
Sbjct: 61  ACGLLAVWALTNTSPVIAANQ-----RLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDL 120

Query: 121 RFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV 180
           RFCDYTNEK+QLKGKSLAAALMS+AKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV
Sbjct: 121 RFCDYTNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRV 180

Query: 181 NFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELG 240
           NFGKANLQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGYIDLQKLCVNPTISPEGRAELG
Sbjct: 181 NFGKANLQGALFKNTVLSGSTFDDAQLEDAVFEDTIIGYIDLQKLCVNPTISPEGRAELG 237

Query: 241 CR 243
           CR
Sbjct: 241 CR 237

BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|567897328|ref|XP_006441152.1| (hypothetical protein CICLE_v10021983mg [Citrus clementina])

HSP 1 Score: 347.4 bits (890), Expect = 2.0e-92
Identity = 178/243 (73.25%), Postives = 200/243 (82.30%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSA-KHPPVTAPFSHSLAPISCSANRDGAVPRESLSPCNHIGS 60
           MAT+S+P S N  S +  S  +H       SHS   ++CSA R+ + P+ES S    +  
Sbjct: 1   MATISVPLSHNTSSLQHLSTIRHRFHFPRSSHSPLTVACSARRNSSEPKESFSHLKELKG 60

Query: 61  VACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPID 120
           VACG LA WA+T  SP  AANQ     RLPPLSTEP+RCERAFVGNTIGQANGVYDKPID
Sbjct: 61  VACGFLAAWAVTAASPVIAANQ-----RLPPLSTEPDRCERAFVGNTIGQANGVYDKPID 120

Query: 121 LRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDR 180
           LRFCDYTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVGASFKGVDFSNAVLDR
Sbjct: 121 LRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDR 180

Query: 181 VNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAEL 240
           VNFGKA+L+GA+FKNTVLSGSTF++A+LQDAVFEDTIIGYIDLQKLC N T+SP+GRAEL
Sbjct: 181 VNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYIDLQKLCTNTTLSPDGRAEL 238

Query: 241 GCR 243
           GCR
Sbjct: 241 GCR 238

BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|568877960|ref|XP_006491985.1| (PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Citrus sinensis])

HSP 1 Score: 344.7 bits (883), Expect = 1.3e-91
Identity = 177/243 (72.84%), Postives = 199/243 (81.89%), Query Frame = 1

Query: 1   MATLSIPFSQNGFSRRFFSA-KHPPVTAPFSHSLAPISCSANRDGAVPRESLSPCNHIGS 60
           MAT+S+P S N  SR+  S  +H       SHS   I+CSA R+ +  +ES S    +  
Sbjct: 1   MATISVPLSHNTSSRQHLSTIRHRFHFPRSSHSPLTIACSARRNSSESKESFSHLKELKG 60

Query: 61  VACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPID 120
           VACG LA WA+T  SP  AANQ     RLPPLSTEP+RCERAFVGNTIGQANGVYDKPID
Sbjct: 61  VACGFLAAWAVTAASPVIAANQ-----RLPPLSTEPDRCERAFVGNTIGQANGVYDKPID 120

Query: 121 LRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDR 180
           LRFCDYTNEKS LKGKSLAAALMS+AKFDGAD+SEVVMSKAYAVGASFKGVDFSNAVLDR
Sbjct: 121 LRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDR 180

Query: 181 VNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAEL 240
           VNFGKA+L+GA+FKNTVLSGSTF++A+LQDAVFEDTIIGY+DLQKLC N T+SP+GR EL
Sbjct: 181 VNFGKAHLEGAVFKNTVLSGSTFNEAQLQDAVFEDTIIGYVDLQKLCTNTTLSPDGRDEL 238

Query: 241 GCR 243
           GCR
Sbjct: 241 GCR 238

BLAST of CmoCh16G000420 vs. NCBI nr
Match: gi|703066942|ref|XP_010087838.1| (hypothetical protein L484_020914 [Morus notabilis])

HSP 1 Score: 344.4 bits (882), Expect = 1.7e-91
Identity = 178/244 (72.95%), Postives = 203/244 (83.20%), Query Frame = 1

Query: 2   ATLSIPFSQNGFSRRFFSAKHPPVTAPFSHSLAPISCS-ANRDGAVPRES--LSPCNHIG 61
           AT SIP +QN F  RF  +K   +    S+S   + CS  +RDG   +E+  +SP   + 
Sbjct: 3   ATSSIPLNQNVFRLRFKPSKRHALLPVESYSSPRVFCSEVSRDGPELKENNNMSPTKQLK 62

Query: 62  SVACGLLAVWALTNTSPAFAANQVNSFWRLPPLSTEPNRCERAFVGNTIGQANGVYDKPI 121
           +VACG+LAVWA+T  SP  AA+Q     RLPPLSTEPNRCERAFVGNTIGQANGVYDKP+
Sbjct: 63  NVACGVLAVWAVTTASPVVAASQ-----RLPPLSTEPNRCERAFVGNTIGQANGVYDKPL 122

Query: 122 DLRFCDYTNEKSQLKGKSLAAALMSEAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLD 181
           DLRFCDY+NEKS LKGKSLAAALMS+AKFDGAD++EVVMSKAYAVGASFKGVDFSNAV+D
Sbjct: 123 DLRFCDYSNEKSNLKGKSLAAALMSDAKFDGADMTEVVMSKAYAVGASFKGVDFSNAVID 182

Query: 182 RVNFGKANLQGALFKNTVLSGSTFDDAELQDAVFEDTIIGYIDLQKLCVNPTISPEGRAE 241
           RVNFGKA+LQGALFKNTVLSGSTFDDA+L+DAVFEDTIIGY+DLQKLC N TISP+GRAE
Sbjct: 183 RVNFGKADLQGALFKNTVLSGSTFDDAKLEDAVFEDTIIGYVDLQKLCTNKTISPDGRAE 241

Query: 242 LGCR 243
           LGCR
Sbjct: 243 LGCR 241

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TL17_ARATH3.3e-7963.16Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL1... [more]
TL203_ARATH6.5e-1130.06Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana GN=TL20.... [more]
RFR32_CYAA55.7e-0729.41Pentapeptide repeat protein Rfr32 OS=Cyanothece sp. (strain ATCC 51142) GN=rfr32... [more]
Match NameE-valueIdentityDescription
A0A0A0LC74_CUCSA1.2e-11285.54Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238170 PE=4 SV=1[more]
V4TLV7_9ROSI1.4e-9273.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021983mg PE=4 SV=1[more]
W9QE42_9ROSA1.2e-9172.95Uncharacterized protein OS=Morus notabilis GN=L484_020914 PE=4 SV=1[more]
B9I1Y5_POPTR1.9e-8971.49Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02510g PE=4 SV=2[more]
A0A067JIP7_JATCU5.0e-8769.60Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27125 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G53490.34.5e-7960.39 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G12250.13.6e-1230.06 Pentapeptide repeat-containing protein[more]
Match NameE-valueIdentityDescription
gi|659111944|ref|XP_008455988.1|5.7e-11688.43PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis melo][more]
gi|778680423|ref|XP_011651313.1|1.7e-11285.54PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Cucumis sativus][more]
gi|567897328|ref|XP_006441152.1|2.0e-9273.25hypothetical protein CICLE_v10021983mg [Citrus clementina][more]
gi|568877960|ref|XP_006491985.1|1.3e-9172.84PREDICTED: thylakoid lumenal 17.4 kDa protein, chloroplastic [Citrus sinensis][more]
gi|703066942|ref|XP_010087838.1|1.7e-9172.95hypothetical protein L484_020914 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000420.1CmoCh16G000420.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001646Pentapeptide repeatPFAMPF13599Pentapeptide_4coord: 165..223
score: 1.
NoneNo IPR availablePANTHERPTHR14136UNCHARACTERIZEDcoord: 1..242
score: 2.9E
NoneNo IPR availablePANTHERPTHR14136:SF11THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTICcoord: 1..242
score: 2.9E
NoneNo IPR availableunknownSSF141571Pentapeptide repeat-likecoord: 120..224
score: 6.28

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G000420CmoCh18G013480Cucurbita moschata (Rifu)cmocmoB274